version 1.0
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome - 1..4755700 4413 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1345 47.13 0 1450348..1450782 + 144 62179923 infC SC1353 - translation initiation factor IF-3 1346 48.99 0 1450878..1451075 + 65 162139592 rpmI SC1354 - 50S ribosomal protein L35 1347 49.86 0 1451126..1451482 + 118 62179925 rplT SC1355 - 50S ribosomal protein L20 1348 53.66 0 1451784..1452767 + 327 62179926 pheS SC1356 - phenylalanyl-tRNA synthetase subunit alpha 1349 53.43 0 1452783..1455170 + 795 62179927 pheT SC1357 - phenylalanyl-tRNA synthetase subunit beta 1350 48.33 0 1455175..1455474 + 99 62179928 ihfA SC1358 - integration host factor subunit alpha 1351 59.12 +1 1455677..1456657 + 326 62179929 btuC SC1359 - vtamin B12-transporter permease 1352 49.64 0 1456749..1457300 + 183 62179930 btuE SC1360 - putative glutathione peroxidase 1353 56.40 0 1457300..1458049 + 249 62179931 btuD SC1361 - vitamin B12-transporter ATPase 1354 48.60 0 1458126..1458590 + 154 62179932 nlpC SC1362 - lipoprotein 1355 46.22 -1 1458904..1459617 + 237 62179933 ydiV SC1363 - diguanylate cyclase/phosphodiesterase domain-containing protein 1356 54.40 0 1459679..1461121 + 480 62179934 ydiU SC1364 - hypothetical protein 1357 50.52 0 1461157..1461348 - 63 62179935 ydiE SC1365 - hypothetical protein 1358 53.01 0 1461505..1462551 - 348 62179936 aroH SC1366 - phospho-2-dehydro-3-deoxyheptonate aldolase 1359 51.92 0 1462707..1463540 - 277 62179937 ydiA SC1367 - hypothetical protein 1360 55.65 0 1463877..1466255 + 792 62179938 pps SC1368 - phosphoenolpyruvate synthase 1361 52.79 0 1466297..1467982 - 561 62179939 ydiD SC1369 - short chain acyl-CoA synthetase 1362 47.96 0 1468027..1468320 - 97 62179940 ydiT SC1370 - putative ferredoxin 1363 55.32 0 1468317..1469603 - 428 62179941 ydiS SC1371 - hypothetical protein 1364 53.85 0 1469660..1470595 - 311 62179942 ydiR SC1372 - electron transfer flavoprotein subunit YdiR 1365 54.12 0 1470617..1471381 - 254 62179943 ydiQ SC1373 - putative electron transfer flavoprotein YdiQ 1366 42.54 -1 1471844..1472734 + 296 62179944 ydiP SC1374 - AraC family transcriptional regulator 1367 49.74 0 1472810..1473961 - 383 62179945 ydiO SC1375 - putative acyl-CoA dehydrogenase 1368 49.12 0 1473975..1475570 - 531 62179946 ydiF SC1376 - putative acetyl-CoA:acetoacetyl-CoA transferase beta subunit 1369 51.38 0 1475725..1476483 - 252 62179947 aroD SC1377 - 3-dehydroquinate dehydratase 1370 48.33 0 1476528..1477394 - 288 62179948 aroE SC1378 - quinate/shikimate dehydrogenase 1371 46.28 -1 1477461..1478696 - 411 62179949 ydiN SC1379 - MFS family transporter 1372 47.28 0 1479060..1480271 - 403 62179950 ydiM SC1380 - MFS family transporter 1373 42.22 -1 1480412..1480771 - 119 62179951 ydiL SC1381 - putative cytoplasmic protein 1374 50.15 0 1480941..1481624 - 227 62179952 yis2 SC1382 - putative integrase protein 1375 50.50 0 1481795..1482196 - 133 62179953 - SC1383 - putative cytoplasmic protein 1376 55.94 0 1482543..1483661 - 372 62179954 ydiK SC1384 - putative inner membrane protein 1377 54.43 0 1483926..1486982 + 1018 62179955 ydiJ SC1385 - paral putative oxidase 1378 56.93 0 1486979..1487389 + 136 62179956 ydiI SC1386 - hypothetical protein 1379 46.05 -1 1487449..1487676 + 75 62179957 ydiH SC1387 - hypothetical protein 1380 47.81 0 1487964..1489310 - 448 62179958 ydjN SC1388 - putative Na+-dicarboxylate symporter 1381 52.03 0 1489737..1490105 + 122 62179959 sufA SC1389 - iron-sulfur cluster assembly scaffold protein 1382 52.42 0 1490114..1491601 + 495 62179960 sufB SC1390 - cysteine desulfurase activator complex subunit SufB 1383 52.88 0 1491618..1492364 + 248 62179961 sufC SC1391 - cysteine desulfurase ATPase component 1384 53.69 0 1492339..1493610 + 423 62179962 sufD SC1392 - cysteine desulfurase activator complex subunit SufD 1385 56.59 0 1493607..1494827 + 406 62179963 sufS SC1393 - selenocysteine lyase 1386 50.60 0 1494840..1495256 + 138 62179964 ynhA SC1394 - cysteine desufuration protein SufE 1387 57.19 0 1495411..1496412 + 333 62179965 ynhG SC1395 - LysM domain-containing protein 1388 47.50 0 1496478..1496717 - 79 62179966 lppB SC1396 - putative methyl-accepting chemotaxis protein 1389 48.97 0 1496798..1497040 - 80 162139591 lppB SC1397 - putative methyl-accepting chemotaxis protein 1390 51.48 0 1497123..1497359 - 78 62179968 lpp SC1398 - murein lipoprotein, links outer and inner membranes 1391 52.30 0 1497670..1499082 - 470 62179969 pykF SC1399 - pyruvate kinase 1392 50.82 0 1499484..1500827 - 447 62179970 ycjj SC1400 - putative amino acid permease 1393 51.01 0 1500849..1501742 - 297 62179971 pip SC1401 - putative hydrolase or acyltransferase 1394 42.68 -1 1501801..1502538 - 245 62179972 - SC1402 - putative cytoplasmic protein 1395 46.21 -1 1502550..1503776 - 408 62179973 rbsk SC1403 - DeoR family transcriptional regulator 1396 57.59 0 1504099..1507161 - 1020 62179974 ttrA SC1404 - tetrathionate reductase complex, subunit A 1397 55.03 0 1507154..1508176 - 340 62179975 ttrC SC1405 - tetrathionate reductase complex, subunit C 1398 56.60 0 1508177..1508911 - 244 62179976 ttrB SC1406 - tetrathionate reductase complex, subunit B 1399 56.83 0 1509093..1510871 + 592 62179977 ttrS SC1407 - tetrathionate reductase complex: sensory transduction histidine kinase 1400 55.23 0 1510846..1511466 + 206 62179978 ttrR SC1408 - tetrathionate reductase complex: response regulator 1401 50.38 0 1511513..1511776 + 87 62179979 - SC1409 - hypothetical protein 1402 55.42 0 1511872..1512831 - 319 62179980 - SC1410 - putative inner membrane protein 1403 53.91 0 1513003..1513731 - 242 62179981 - SC1411 - MerR family regulatory protein 1404 39.75 -2 1513910..1514548 - 212 62179982 ssrB SC1412 - secretion system transcriptonal activator 1405 42.35 -1 1514579..1517341 - 920 62179983 ssrA SC1413 - secretion system regulator:sensor component 1406 41.54 -1 1517742..1518143 + 133 62179984 ssaB SC1414 - secretion system apparatus SsaB 1407 42.17 -1 1518145..1519638 + 497 62179985 ssaC SC1415 - secretion system apparatus SsaC 1408 43.32 -1 1519619..1520830 + 403 62179986 ssaD SC1416 - secretion system apparatus SsaD 1409 42.39 -1 1520838..1521080 + 80 62179987 ssaE SC1417 - secretion system effector SsaE 1410 41.28 -1 1521289..1521615 + 108 62179988 sseA SC1418 - secretion system effector SseA 1411 43.49 -1 1521622..1522212 + 196 62179989 sseB SC1419 - secretion system effector SseB 1412 50.00 0 1522209..1522682 + 157 62179990 - SC1420 - secretion system chaparone SscA 1413 45.91 -1 1522685..1524139 + 484 62179991 sseC SC1421 - secretion system effector SseC 1414 48.81 0 1524155..1524742 + 195 62179992 sseD SC1422 - secretion system effector SseD 1415 45.32 -1 1524745..1525161 + 138 62179993 sseE SC1423 - secretion system effector SseE 1416 47.59 0 1525213..1525647 + 144 62179994 - SC1424 - secretion system chaparone SscB 1417 49.04 0 1525663..1526445 + 260 62179995 sseF SC1425 - secretion system effector SseF 1418 47.83 0 1526442..1527131 + 229 62179996 sseG SC1426 - secretion system effector SseG 1419 37.08 -2 1527174..1527440 + 88 62179997 ssaG SC1427 - secretion system apparatus SsaG 1420 43.64 -1 1527418..1527708 + 96 62179998 ssaH SC1428 - secretion system apparatus SsaH 1421 42.17 -1 1527720..1527968 + 82 62179999 ssaI SC1429 - secretion system apparatus SsaI 1422 41.87 -1 1527965..1528714 + 249 62180000 ssaJ SC1430 - secretion system apparatus SsaJ 1423 46.81 0 1528732..1529280 + 182 62180001 - SC1431 - putative cytoplasmic protein 1424 42.67 -1 1529277..1529951 + 224 62180002 ssaK SC1432 - secretion system apparatus SsaK 1425 45.62 -1 1529917..1530933 + 338 62180003 ssaL SC1433 - secretion system apparatus SsaL 1426 42.01 -1 1530991..1531359 + 122 62180004 ssaM SC1434 - secretion system apparatus SsaM 1427 46.63 0 1531344..1533389 + 681 62180005 ssaV SC1435 - secretion system apparatus protein SsaV 1428 51.08 0 1533379..1534680 + 433 62180006 ssaN SC1436 - type III secretion system ATPase 1429 43.52 -1 1534629..1535060 + 143 62180007 ssaO SC1437 - secretion system apparatus SsaO 1430 44.53 -1 1535041..1535415 + 124 62180008 ssaP SC1438 - secretion system apparatus SsaP 1431 45.72 -1 1535396..1536364 + 322 62180009 ssaQ SC1439 - type III secretion system protein 1432 43.06 -1 1536432..1537079 + 215 62180010 ssaR SC1440 - type III secretion system protein 1433 42.70 -1 1537076..1537342 + 88 62180011 ssaS SC1441 - secretion system apparatus SsaS 1434 38.97 -2 1537343..1538122 + 259 62180012 ssaT SC1442 - secretion system apparatus SsaT 1435 39.66 -2 1538119..1539177 + 352 62180013 ssaU SC1443 - secretion system apparatus protein SsaU 1436 53.57 0 1539650..1541023 - 457 62180014 ydhE SC1444 - multidrug efflux protein 1437 51.09 0 1541240..1541881 + 213 62180015 ribE SC1445 - riboflavin synthase subunit alpha 1438 48.56 0 1541923..1543071 - 382 62180016 cfa SC1446 - cyclopropane fatty acyl phospholipid synthase 1439 55.06 0 1543361..1544566 - 401 62180017 ydhC SC1447 - inner membrane transport protein YdhC 1440 56.91 0 1544679..1545611 + 310 62180018 ydhB SC1448 - putative DNA-binding transcriptional regulator 1441 54.58 0 1545608..1546633 - 341 62180019 purR SC1449 - DNA-binding transcriptional repressor PurR 1442 51.37 0 1547101..1547682 - 193 62180020 sodB SC1450 - superoxide dismutase 1443 51.23 0 1547809..1548663 - 284 62180021 ydhO SC1451 - putative cell wall-associated hydrolase 1444 50.86 0 1548966..1549313 + 115 62180022 ydhD SC1452 - hypothetical protein 52.01 MEAN 5.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0