IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
887	 32.28	0	944569..950247	+	1892	67459279	-	RF_0887	-	large extracellular alpha-helical protein
888	 28.75	0	950940..951179	-	79	67459280	-	RF_0888	-	hypothetical protein
889	 29.84	0	951182..951439	-	85	67459281	-	RF_0889	-	hypothetical protein
890	 32.32	0	951544..953706	-	720	67459282	fadB	RF_0890	-	3-hydroxyacyl-CoA dehydrogenase FadB
891	 31.65	0	954211..954567	-	118	67459283	comF	RF_0891	-	competence protein F
892	 39.37	+1	954918..955232	-	104	67459284	-	RF_0892	-	hypothetical protein
893	 30.72	0	955546..956691	-	381	67459285	ubiH	RF_0893	-	2-octaprenyl-6-methoxyphenyl hydroxylase
894	 23.10	-2	956663..956965	-	100	67459286	-	RF_0894	-	putative monovalent cation/H+ antiporter subunit F
895	 31.51	0	957436..958863	+	475	67459287	ntrX	RF_0895	-	nitrogen assimilation regulatory protein NtrX
896	 24.35	-1	958832..960601	+	589	67459288	-	RF_0896	-	hypothetical protein
897	 31.81	0	960768..961817	-	349	67459289	-	RF_0897	-	hypothetical protein
898	 29.32	0	962129..962377	-	82	67459290	-	RF_0898	-	cytotoxic translational repressor of toxin-antitoxin system RelE
899	 31.52	0	962370..962645	-	91	67459291	-	RF_0899	-	antitoxin of toxin-antitoxin system
900	 35.01	0	962736..964520	-	594	67459292	pbpA1	RF_0900	-	penicillin-binding protein
901	 22.03	-2	964510..965031	-	173	67459293	-	RF_0901	-	hypothetical protein
902	 34.52	0	965706..967391	-	561	67459294	pbpA2	RF_0902	-	penicillin-binding protein
903	 31.72	0	967521..968078	-	185	67459295	ftsL	RF_0903	-	cell division protein FtsL
904	 36.59	+1	968137..969057	-	306	67459296	mraW	RF_0904	-	S-adenosyl-methyltransferase MraW
905	 39.78	+2	969057..969506	-	149	67459297	mraZ	RF_0905	-	cell division protein MraZ
906	 33.19	0	970343..971779	+	478	67459298	panF	RF_0906	-	Sodium/pantothenate symporter
907	 26.90	-1	971860..972294	-	144	67459299	-	RF_0907	-	hypothetical protein
908	 34.38	0	972420..972803	-	127	67459300	-	RF_0908	-	hypothetical protein
909	 28.07	-1	972781..972951	-	56	67459301	-	RF_0909	-	hypothetical protein
910	 34.14	0	973108..973356	+	82	67459302	-	RF_0910	-	antitoxin of toxin-antitoxin system StbD
911	 24.24	-2	973347..973610	+	87	67459303	-	RF_0911	-	toxin of toxin-antitoxin system
912	 35.56	0	973615..975543	-	642	67459304	uvrC	RF_0912	-	excinuclease ABC subunit C
913	 32.02	0	975672..976202	-	176	67459305	-	RF_0913	-	hypothetical protein
914	 27.13	-1	976393..976650	-	85	67459306	-	RF_0914	-	hypothetical protein
915	 34.94	0	977066..978121	-	351	67459307	-	RF_0915	-	methylated-DNA--protein-cysteine methyltransferase
916	 33.93	0	978211..978717	-	168	67459308	dat	RF_0916	-	methylated-DNA--protein-cysteine methyltransferase
917	 30.36	0	978925..979260	+	111	67459309	-	RF_0917	-	hypothetical protein
918	 26.90	-1	979318..980748	-	476	67459310	-	RF_0918	-	Type I site-specific restriction-modification system, R (restriction) subunit
919	 31.83	0	980943..981809	-	288	67459311	-	RF_0919	-	Type I site-specific restriction-modification system, R (restriction) subunit
920	 33.33	0	981720..982673	+	317	67459312	-	RF_0920	-	transposase
921	 30.45	0	982748..982990	+	80	67459313	-	RF_0921	-	transposase
922	 35.00	0	983033..983572	+	179	67459314	-	RF_0922	-	ankyrin repeat-containing protein
923	 28.74	0	983717..984652	-	311	67459315	-	RF_0923	-	ankyrin repeat-containing protein
924	 40.58	+2	984883..985089	-	68	67459316	-	RF_0924	-	lysozyme
925	 34.47	0	985836..986273	+	145	67459317	-	RF_0925	-	hypothetical protein
926	 30.04	0	986311..986553	-	80	67459318	-	RF_0926	-	transposase
927	 33.54	0	986628..987581	-	317	67459319	-	RF_0927	-	transposase
928	 29.40	0	988224..988757	+	177	67459320	-	RF_0928	-	hypothetical protein
929	 33.62	0	989155..989499	+	114	67459321	-	RF_0929	-	hypothetical protein
930	 33.33	0	990157..991110	+	317	67459322	-	RF_0930	-	transposase
931	 30.45	0	991185..991427	+	80	67459323	-	RF_0931	-	transposase
932	 31.32	0	991464..992207	-	247	67459324	-	RF_0932	-	hypothetical protein
933	 41.29	+2	992495..992695	-	66	67459325	-	RF_0933	-	Phage-related lysozyme
934	 28.09	-1	992745..993011	-	88	67459326	-	RF_0934	-	hypothetical protein
935	 32.65	0	993596..993889	-	97	67459327	-	RF_0935	-	hypothetical protein
936	 37.79	+1	994106..994576	-	156	67459328	-	RF_0936	-	hypothetical protein
937	 28.13	-1	994740..995258	-	172	67459329	-	RF_0937	-	hypothetical protein
938	 39.81	+2	995862..996077	-	71	67459330	-	RF_0938	-	hypothetical protein
939	 33.77	0	996184..996864	-	226	67459331	-	RF_0939	-	ankyrin repeat-containing protein
940	 31.72	0	997104..997973	-	289	67459332	-	RF_0940	-	nucleotidyltransferase/HEPN domain-containing protein
941	 36.02	+1	998319..1001039	-	906	67459333	secA	RF_0941	-	preprotein translocase subunit SecA
942	 30.39	0	1001273..1002121	+	282	67459334	prsA	RF_0942	-	protein export protein PrsA precursor
943	 32.32	0	1002284..1002679	-	131	67459335	acpS	RF_0943	-	4'-phosphopantetheinyl transferase
944	 31.76	0	1002680..1003060	-	126	67459336	rpoZ	RF_0944	-	DNA-directed RNA polymerase subunit omega
945	 36.75	+1	1003234..1004493	-	419	67459337	murA	RF_0945	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
946	 28.35	0	1004592..1004852	-	86	67459338	-	RF_0946	-	excinuclease ABC subunit C
947	 37.29	+1	1004956..1007382	-	808	67459339	gyrB	RF_0947	-	DNA gyrase subunit B
948	 31.13	0	1007625..1008485	+	286	67459340	-	RF_0948	-	HAD family hydrolase
949	 37.04	+1	1008785..1009189	-	134	67459341	-	RF_0949	-	glutamine amidotransferase
950	 33.16	0	1009261..1010448	-	395	67459342	-	RF_0950	-	ankyrin repeat-containing protein
951	 32.90	0	1010680..1012050	+	456	67459343	mgtE	RF_0951	-	magnesium transporter
952	 28.96	0	1012054..1012350	-	98	67459344	-	RF_0952	-	hypothetical protein
953	 30.58	0	1012478..1013167	+	229	67459345	spoT3	RF_0953	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
954	 31.55	0	1013130..1013972	-	280	67459346	-	RF_0954	-	proline/betaine transporter
955	 37.63	+1	1013976..1014440	-	154	67459347	-	RF_0955	-	proline/betaine transporter
956	 28.94	0	1015113..1015385	-	90	67459348	-	RF_0956	-	cytotoxic translational repressor of toxin-antitoxin system RelE
957	 26.84	-1	1015369..1015599	-	76	67459349	-	RF_0957	-	antitoxin of toxin-antitoxin system
958	 32.74	0	1015814..1016317	+	167	67459350	yajC	RF_0958	-	preprotein translocase subunit YajC
959	 35.39	0	1016301..1017857	+	518	67459351	secD	RF_0959	-	preprotein translocase subunit SecD
960	 30.58	0	1018003..1018620	+	205	67459352	-	RF_0960	-	Sco2 protein precursor
961	 32.30	0	1018715..1019101	+	128	67459353	ccmE	RF_0961	-	cytochrome c-type biogenesis protein CcmE
962	 36.59	+1	1019229..1019750	+	173	162022121	ppa	RF_0962	-	inorganic pyrophosphatase
963	 32.26	0	1019942..1021612	+	556	67459355	mviN	RF_0963	-	integral membrane protein MviN
964	 26.61	-1	1021593..1022336	+	247	67459356	traX	RF_0964	-	F pilin acetylation protein TraX
965	 30.02	0	1022421..1023023	+	200	67459357	-	RF_0965	-	hypothetical protein
966	 35.46	0	1023380..1024225	-	281	67459358	-	RF_0966	-	transposase
967	 33.80	0	1024520..1024735	-	71	67459359	-	RF_0967	-	transposase
968	 29.43	0	1024855..1025469	-	204	67459360	spoT10	RF_0968	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
969	 26.24	-1	1025565..1026269	+	234	67459361	-	RF_0969	-	acetyltransferase
970	 26.53	-1	1026387..1029341	+	984	67459362	-	RF_0970	-	Na+/proline symporter, signal transduction histidine kinase
971	 35.46	0	1029461..1030306	+	281	67459363	-	RF_0971	-	transposase
972	 29.15	0	1030734..1032047	+	437	67459364	-	RF_0972	-	hypothetical protein
973	 29.23	0	1032882..1033661	+	259	67459365	-	RF_0973	-	hypothetical protein
974	 31.25	0	1033658..1033945	+	95	67459366	-	RF_0974	-	hypothetical protein
975	 35.78	0	1034014..1034625	+	203	67459367	-	RF_0975	-	transposase
976	 36.71	+1	1034600..1035043	+	147	67459368	-	RF_0976	-	transposase
977	 36.83	+1	1035040..1035840	+	266	67459369	-	RF_0977	-	transposase/IS protein
978	 31.75	0	1035905..1036156	-	83	67459370	-	RF_0978	-	hypothetical protein
979	 39.62	+1	1036470..1038377	+	635	67459371	thrS	RF_0979	-	threonyl-tRNA synthetase
980	 26.19	-1	1038698..1039117	-	139	67459372	-	RF_0980	-	acetyltransferase
981	 34.18	0	1039209..1041092	+	627	67459373	mdlB	RF_0981	-	ABC-type multidrug transport system, ATPase and permease components
982	 28.61	0	1041511..1042314	-	267	67459374	-	RF_0982	-	hypothetical protein
983	 30.68	0	1042443..1042856	-	137	67459375	-	RF_0983	-	hypothetical protein
984	 28.72	0	1042856..1044046	-	396	67459376	-	RF_0984	-	hypothetical protein
985	 36.48	+1	1044264..1045628	+	454	67459377	tolC	RF_0985	-	TolC family type I secretion outer membrane protein
986	 29.32	0	1045630..1046028	+	132	67459378	-	RF_0986	-	hypothetical protein
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.