IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
817	 35.76	0	866335..867240	+	301	67459209	hemC	RF_0817	-	porphobilinogen deaminase
818	 31.16	0	867305..867580	+	91	67459210	-	RF_0818	-	hypothetical protein
819	 30.57	0	867690..868484	+	264	67459211	-	RF_0819	-	hypothetical protein
820	 29.35	0	868646..869272	-	208	67459212	-	RF_0820	-	hydrolase or acyltransferase
821	 30.74	0	869232..869501	-	89	67459213	-	RF_0821	-	hypothetical protein
822	 30.83	0	870001..870639	+	212	67459214	-	RF_0822	-	hypothetical protein
823	 31.46	0	870736..871056	+	106	67459215	-	RF_0823	-	hypothetical protein
824	 32.83	0	871343..872335	-	330	67459216	trpS	RF_0824	-	tryptophanyl-tRNA synthetase
825	 33.47	0	872531..873256	+	241	67459217	plsC	RF_0825	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
826	 35.10	0	873309..873761	+	150	67459218	-	RF_0826	-	hypothetical protein
827	 31.87	0	874049..874321	-	90	67459219	relB2	RF_0827	-	DNA-damage-inducible protein J
828	 34.72	0	874464..875183	+	239	67459220	-	RF_0828	-	hypothetical protein
829	 24.78	-1	875504..876508	-	334	67459221	-	RF_0829	-	hypothetical protein
830	 27.67	-1	876501..877241	-	246	67459222	-	RF_0830	-	hypothetical protein
831	 27.49	-1	877225..878079	-	284	67459223	-	RF_0831	-	hypothetical protein
832	 28.35	0	878027..878668	-	213	67459224	lysE	RF_0832	-	lysine efflux permease
833	 23.28	-2	878669..879076	-	135	67459225	-	RF_0833	-	hypothetical protein
834	 30.17	0	879252..880577	-	441	67459226	ampG1	RF_0834	-	AmpG-related permease
835	 31.63	0	880583..881110	-	175	67459227	-	RF_0835	-	hypothetical protein
836	 28.19	0	881280..882833	+	517	67459228	rfaJ	RF_0836	-	lipopolysaccharide 1,2-glucosyltransferase RfaJ
837	 29.68	0	882902..884407	+	501	67459229	tlc3	RF_0837	-	ADP,ATP carrier protein
838	 24.66	-1	884506..886188	+	560	67459230	-	RF_0838	-	hypothetical protein
839	 32.11	0	886310..887293	+	327	67459231	ispB	RF_0839	-	octaprenyl-diphosphate synthase
840	 34.44	0	887689..889494	-	601	67459232	pepP	RF_0840	-	aminopeptidase P
841	 36.45	+1	889670..890953	-	427	67459233	potE	RF_0841	-	putrescine-ornithine antiporter
842	 31.13	0	891434..891751	-	105	67459234	-	RF_0842	-	hypothetical protein
843	 37.84	+1	891824..892156	-	110	67459235	iscA2	RF_0843	-	Iron-sulfur cluster assembly accessory protein
844	 37.37	+1	892160..892555	-	131	67459236	iscU	RF_0844	-	scaffold protein
845	 37.19	+1	892692..893960	-	422	67459237	iscS	RF_0845	-	cysteine desulfurase
846	 32.43	0	894104..895213	-	369	67459238	spl1	RF_0846	-	NifS protein
847	 31.43	0	895210..895629	-	139	67459239	iscR	RF_0847	-	Iron-sulfur cluster assembly transcription factor IscR
848	 30.63	0	896020..897390	-	456	67459240	-	RF_0848	-	hypothetical protein
849	 24.51	-1	897415..898287	-	290	67459241	-	RF_0849	-	hypothetical protein
850	 28.87	0	899124..901049	-	641	67459242	-	RF_0850	-	hypothetical protein
851	 31.18	0	901319..901735	-	138	67459243	-	RF_0851	-	hypothetical protein
852	 25.53	-1	901771..902244	+	157	67459244	-	RF_0852	-	hypothetical protein
853	 29.24	0	902241..904217	-	658	67459245	-	RF_0853	-	NTPase
854	 29.99	0	904536..905912	+	458	67459246	nuoN1	RF_0854	-	NADH dehydrogenase subunit N
855	 29.67	0	905899..907647	-	582	67459247	-	RF_0855	-	hypothetical protein
856	 35.24	0	907835..908830	-	331	67459248	hemB	RF_0856	-	delta-aminolevulinic acid dehydratase
857	 29.84	0	909006..910037	+	343	67459249	-	RF_0857	-	hypothetical protein
858	 33.38	0	910034..911980	-	648	67459250	priA	RF_0858	-	primosome assembly protein PriA
859	 32.64	0	912044..912619	+	191	67459251	ubiX	RF_0859	-	aromatic acid decarboxylase
860	 33.47	0	912865..914349	+	494	67459252	dnaB	RF_0860	-	replicative DNA helicase
861	 38.46	+1	914393..914665	-	90	67459253	-	RF_0861	-	hypothetical protein
862	 30.33	0	914694..915893	-	399	67459254	-	RF_0862	-	putative to amino acid permeases
863	 31.88	0	916186..916875	+	229	67459255	rluA2	RF_0863	-	ribosomal large subunit pseudouridine synthase
864	 30.69	0	916926..919805	+	959	67459256	-	RF_0864	-	hypothetical protein
865	 31.64	0	919810..920400	+	196	67459257	-	RF_0865	-	N6-adenine-specific methylase
866	 38.18	+1	920527..921867	+	446	67459258	radA	RF_0866	-	DNA repair protein RadA
867	 31.85	0	921864..922199	+	111	67459259	-	RF_0867	-	hypothetical protein
868	 27.73	-1	922291..923004	+	237	67459260	recO	RF_0868	-	DNA repair protein RecO
869	 34.49	0	923532..924224	+	230	67459261	-	RF_0869	-	putative glycoprotein endopeptidase
870	 27.12	-1	924378..925697	-	439	67459262	-	RF_0870	-	hypothetical protein
871	 36.22	+1	926218..928707	-	829	67459263	infB	RF_0871	-	translation initiation factor IF-2
872	 33.20	0	928995..930506	-	503	67459264	nusA	RF_0872	-	transcription elongation factor NusA
873	 27.98	-1	930517..931002	-	161	67459265	-	RF_0873	-	hypothetical protein
874	 28.43	0	931129..932514	-	461	67459266	-	RF_0874	-	hypothetical protein
875	 27.97	-1	932581..933009	+	142	67459267	-	RF_0875	-	putative transcriptional regulator
876	 32.94	0	932988..933752	-	254	67459268	tlyA	RF_0876	-	hemolysin A
877	 37.86	+1	933911..935146	-	411	67459269	tyrS	RF_0877	-	tyrosyl-tRNA synthetase
878	 35.33	0	935411..935860	+	149	67459270	-	RF_0878	-	hypothetical protein
879	 43.57	+2	936672..937013	+	113	67459271	-	RF_0879	-	hypothetical protein
880	 31.28	0	937381..937623	-	80	67459272	-	RF_0880	-	transposase
881	 33.54	0	937698..938651	-	317	67459273	-	RF_0881	-	transposase
882	 29.56	0	938859..939362	-	167	67459274	-	RF_0882	-	hypothetical protein
883	 27.66	-1	939415..940578	-	387	67459275	-	RF_0883	-	hypothetical protein
884	 31.99	0	941605..942276	+	223	67459276	spoT9	RF_0884	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
885	 31.12	0	942233..943588	-	451	67459277	proP8	RF_0885	-	proline/betaine transporter
886	 29.78	0	943794..944468	-	224	67459278	-	RF_0886	-	hypothetical protein
887	 32.28	0	944569..950247	+	1892	67459279	-	RF_0887	-	large extracellular alpha-helical protein
888	 28.75	0	950940..951179	-	79	67459280	-	RF_0888	-	hypothetical protein
889	 29.84	0	951182..951439	-	85	67459281	-	RF_0889	-	hypothetical protein
890	 32.32	0	951544..953706	-	720	67459282	fadB	RF_0890	-	3-hydroxyacyl-CoA dehydrogenase FadB
891	 31.65	0	954211..954567	-	118	67459283	comF	RF_0891	-	competence protein F
892	 39.37	+1	954918..955232	-	104	67459284	-	RF_0892	-	hypothetical protein
893	 30.72	0	955546..956691	-	381	67459285	ubiH	RF_0893	-	2-octaprenyl-6-methoxyphenyl hydroxylase
894	 23.10	-2	956663..956965	-	100	67459286	-	RF_0894	-	putative monovalent cation/H+ antiporter subunit F
895	 31.51	0	957436..958863	+	475	67459287	ntrX	RF_0895	-	nitrogen assimilation regulatory protein NtrX
896	 24.35	-1	958832..960601	+	589	67459288	-	RF_0896	-	hypothetical protein
897	 31.81	0	960768..961817	-	349	67459289	-	RF_0897	-	hypothetical protein
898	 29.32	0	962129..962377	-	82	67459290	-	RF_0898	-	cytotoxic translational repressor of toxin-antitoxin system RelE
899	 31.52	0	962370..962645	-	91	67459291	-	RF_0899	-	antitoxin of toxin-antitoxin system
900	 35.01	0	962736..964520	-	594	67459292	pbpA1	RF_0900	-	penicillin-binding protein
901	 22.03	-2	964510..965031	-	173	67459293	-	RF_0901	-	hypothetical protein
902	 34.52	0	965706..967391	-	561	67459294	pbpA2	RF_0902	-	penicillin-binding protein
903	 31.72	0	967521..968078	-	185	67459295	ftsL	RF_0903	-	cell division protein FtsL
904	 36.59	+1	968137..969057	-	306	67459296	mraW	RF_0904	-	S-adenosyl-methyltransferase MraW
905	 39.78	+2	969057..969506	-	149	67459297	mraZ	RF_0905	-	cell division protein MraZ
906	 33.19	0	970343..971779	+	478	67459298	panF	RF_0906	-	Sodium/pantothenate symporter
907	 26.90	-1	971860..972294	-	144	67459299	-	RF_0907	-	hypothetical protein
908	 34.38	0	972420..972803	-	127	67459300	-	RF_0908	-	hypothetical protein
909	 28.07	-1	972781..972951	-	56	67459301	-	RF_0909	-	hypothetical protein
910	 34.14	0	973108..973356	+	82	67459302	-	RF_0910	-	antitoxin of toxin-antitoxin system StbD
911	 24.24	-2	973347..973610	+	87	67459303	-	RF_0911	-	toxin of toxin-antitoxin system
912	 35.56	0	973615..975543	-	642	67459304	uvrC	RF_0912	-	excinuclease ABC subunit C
913	 32.02	0	975672..976202	-	176	67459305	-	RF_0913	-	hypothetical protein
914	 27.13	-1	976393..976650	-	85	67459306	-	RF_0914	-	hypothetical protein
915	 34.94	0	977066..978121	-	351	67459307	-	RF_0915	-	methylated-DNA--protein-cysteine methyltransferase
916	 33.93	0	978211..978717	-	168	67459308	dat	RF_0916	-	methylated-DNA--protein-cysteine methyltransferase
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.