IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
751	 30.85	0	811541..811741	+	66	67459143	-	RF_0751	-	hypothetical protein
752	 23.63	-2	811870..812271	+	133	67459144	-	RF_0752	-	hypothetical protein
753	 32.32	0	812273..812665	+	130	67459145	-	RF_0753	-	nucleotidyltransferase substrate binding protein
754	 25.61	-1	812652..812936	+	94	67459146	-	RF_0754	-	hypothetical protein
755	 33.17	0	812952..813551	+	199	67459147	-	RF_0755	-	hypothetical protein
756	 28.86	0	813567..813968	+	133	67459148	-	RF_0756	-	hypothetical protein
757	 27.84	-1	814191..814481	+	96	67459149	-	RF_0757	-	hypothetical protein
758	 20.69	-2	814485..814658	+	57	67459150	-	RF_0758	-	hypothetical protein
759	 27.03	-1	814645..814977	+	110	67459151	-	RF_0759	-	hypothetical protein
760	 35.36	0	815155..815598	+	147	67459152	infC	RF_0760	-	translation initiation factor IF-3
761	 35.67	0	815786..817024	+	412	67459153	pdhC	RF_0761	-	branched-chain alpha-keto acid dehydrogenase subunit E2
762	 38.01	+1	817195..818262	+	355	67459154	prfA	RF_0762	-	peptide chain release factor 1
763	 33.62	0	818476..820239	+	587	67459155	recJ	RF_0763	-	single-stranded-DNA-specific exonuclease RecJ
764	 30.14	0	820495..821811	+	438	67459156	-	RF_0764	-	putative methyltransferase
765	 35.80	0	822398..823774	+	458	67459157	rho	RF_0765	-	transcription termination factor Rho
766	 33.66	0	823905..824819	+	304	67459158	sppA2	RF_0766	-	Signal peptide peptidase SppA
767	 27.57	-1	824822..825064	+	80	67459159	himD	RF_0767	-	integration host factor beta-subunit
768	 26.16	-1	825072..825629	+	185	67459160	-	RF_0768	-	hypothetical protein
769	 29.99	0	825901..826647	+	248	67459161	-	RF_0769	-	hypothetical protein
770	 33.18	0	826879..827538	+	219	67459162	cmk	RF_0770	-	cytidylate kinase
771	 33.33	0	827750..829456	+	568	67459163	rpsA	RF_0771	-	30S ribosomal protein S1
772	 35.15	0	829699..830304	+	201	67459164	clpP	RF_0772	-	ATP-dependent Clp protease proteolytic subunit
773	 30.71	0	830960..831454	+	164	67459165	-	RF_0773	-	transcription activator
774	 32.23	0	831458..832276	-	272	67459166	-	RF_0774	-	streptomycin 6-kinase
775	 31.12	0	832291..832833	+	180	67459167	-	RF_0775	-	acetyltransferase
776	 32.51	0	832830..833315	+	161	67459168	-	RF_0776	-	acetyltransferase
777	 31.50	0	833495..834202	+	235	67459169	-	RF_0777	-	metal-dependent hydrolase
778	 30.86	0	834199..834966	+	255	67459170	-	RF_0778	-	hypothetical protein
779	 30.56	0	835156..835407	+	83	67459171	-	RF_0779	-	antitoxin of toxin-antitoxin system Phd
780	 30.98	0	835833..836513	+	226	67459172	-	RF_0780	-	hypothetical protein
781	 35.80	0	836853..837095	+	80	67459173	-	RF_0781	-	hypothetical protein
782	 29.12	0	837539..838084	-	181	67459174	-	RF_0782	-	ankyrin repeat-containing protein
783	 29.32	0	838093..838740	-	215	67459175	-	RF_0783	-	ankyrin repeat-containing protein
784	 31.62	0	838757..839515	-	252	67459176	-	RF_0784	-	acetyltransferase
785	 40.75	+2	839828..840865	+	345	67459177	fni	RF_0785	-	isopentenyl pyrophosphate isomerase
786	 29.08	0	840939..841760	-	273	67459178	traC	RF_0786	-	DNA primase
787	 34.39	0	842150..842434	-	94	67459179	-	RF_0787	-	toxin of toxin-antitoxin system ParE
788	 30.27	0	842427..842687	-	86	67459180	-	RF_0788	-	antitoxin of toxin-antitoxin system Phd
789	 33.33	0	842763..842942	-	59	67459181	-	RF_0789	-	hypothetical protein
790	 32.20	0	842952..843392	-	146	67459182	-	RF_0790	-	hypothetical protein
791	 29.45	0	843842..844510	+	222	67459183	-	RF_0791	-	hypothetical protein
792	 29.50	0	844805..845065	-	86	67459184	-	RF_0792	-	toxin of toxin-antitoxin system
793	 31.62	0	845046..845687	-	213	67459185	-	RF_0793	-	phage-associated protein
794	 27.33	-1	845852..846883	-	343	67459186	-	RF_0794	-	hypothetical protein
795	 35.46	0	847412..847552	-	46	67459187	-	RF_0795	-	rRNA methylase
796	 34.58	0	847560..847961	-	133	67459188	-	RF_0796	-	rRNA methylase
797	 40.00	+2	848043..848192	-	49	67459189	-	RF_0797	-	hypothetical protein
798	 29.99	0	848444..849190	-	248	67459190	glmU	RF_0798	-	UDP-N-acetylglucosamine pyrophosphorylase
799	 34.65	0	849187..849945	-	252	67459191	-	RF_0799	-	hypothetical protein
800	 23.02	-2	850084..850209	-	41	67459192	rpmJ	RF_0800	-	50S ribosomal protein L36
801	 31.18	0	850744..851394	+	216	67459193	-	RF_0801	-	hypothetical protein
802	 28.10	-1	851719..852024	+	101	67459194	-	RF_0802	-	hypothetical protein
803	 34.52	0	852133..852972	+	279	67459195	mltE2	RF_0803	-	putative soluble lytic murein transglycosylase
804	 26.27	-1	852978..853586	+	202	67459196	-	RF_0804	-	hypothetical protein
805	 32.44	0	853769..854104	+	111	67459197	-	RF_0805	-	hypothetical protein
806	 31.53	0	854175..855005	+	276	67459198	bioC	RF_0806	-	biotin synthesis protein BioC
807	 38.99	+1	855267..856646	+	459	67459199	lpdA2	RF_0807	-	dihydrolipoamide dehydrogenase
808	 31.26	0	856871..857305	+	144	67459200	-	RF_0808	-	5-formyltetrahydrofolate cyclo-ligase
809	 27.42	-1	857758..858603	-	281	67459201	rnd	RF_0809	-	ribonuclease D
810	 31.85	0	858613..859491	-	292	67459202	-	RF_0810	-	hypothetical protein
811	 31.92	0	859517..860365	+	282	67459203	gcvT	RF_0811	-	glycine cleavage T-protein
812	 32.55	0	860494..860874	+	126	67459204	-	RF_0812	-	hypothetical protein
813	 30.28	0	860774..862213	+	479	67459205	-	RF_0813	-	hypothetical protein
814	 30.03	0	862557..864281	+	574	67459206	-	RF_0814	-	Na+/proline symporter and signal transduction histidine kinase
815	 31.49	0	864322..865296	+	324	67459207	-	RF_0815	-	Na+/proline symporter and signal transduction histidine kinase
816	 32.23	0	865433..866338	+	301	67459208	mccF2	RF_0816	-	microcin C7 resistance protein
817	 35.76	0	866335..867240	+	301	67459209	hemC	RF_0817	-	porphobilinogen deaminase
818	 31.16	0	867305..867580	+	91	67459210	-	RF_0818	-	hypothetical protein
819	 30.57	0	867690..868484	+	264	67459211	-	RF_0819	-	hypothetical protein
820	 29.35	0	868646..869272	-	208	67459212	-	RF_0820	-	hydrolase or acyltransferase
821	 30.74	0	869232..869501	-	89	67459213	-	RF_0821	-	hypothetical protein
822	 30.83	0	870001..870639	+	212	67459214	-	RF_0822	-	hypothetical protein
823	 31.46	0	870736..871056	+	106	67459215	-	RF_0823	-	hypothetical protein
824	 32.83	0	871343..872335	-	330	67459216	trpS	RF_0824	-	tryptophanyl-tRNA synthetase
825	 33.47	0	872531..873256	+	241	67459217	plsC	RF_0825	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
826	 35.10	0	873309..873761	+	150	67459218	-	RF_0826	-	hypothetical protein
827	 31.87	0	874049..874321	-	90	67459219	relB2	RF_0827	-	DNA-damage-inducible protein J
828	 34.72	0	874464..875183	+	239	67459220	-	RF_0828	-	hypothetical protein
829	 24.78	-1	875504..876508	-	334	67459221	-	RF_0829	-	hypothetical protein
830	 27.67	-1	876501..877241	-	246	67459222	-	RF_0830	-	hypothetical protein
831	 27.49	-1	877225..878079	-	284	67459223	-	RF_0831	-	hypothetical protein
832	 28.35	0	878027..878668	-	213	67459224	lysE	RF_0832	-	lysine efflux permease
833	 23.28	-2	878669..879076	-	135	67459225	-	RF_0833	-	hypothetical protein
834	 30.17	0	879252..880577	-	441	67459226	ampG1	RF_0834	-	AmpG-related permease
835	 31.63	0	880583..881110	-	175	67459227	-	RF_0835	-	hypothetical protein
836	 28.19	0	881280..882833	+	517	67459228	rfaJ	RF_0836	-	lipopolysaccharide 1,2-glucosyltransferase RfaJ
837	 29.68	0	882902..884407	+	501	67459229	tlc3	RF_0837	-	ADP,ATP carrier protein
838	 24.66	-1	884506..886188	+	560	67459230	-	RF_0838	-	hypothetical protein
839	 32.11	0	886310..887293	+	327	67459231	ispB	RF_0839	-	octaprenyl-diphosphate synthase
840	 34.44	0	887689..889494	-	601	67459232	pepP	RF_0840	-	aminopeptidase P
841	 36.45	+1	889670..890953	-	427	67459233	potE	RF_0841	-	putrescine-ornithine antiporter
842	 31.13	0	891434..891751	-	105	67459234	-	RF_0842	-	hypothetical protein
843	 37.84	+1	891824..892156	-	110	67459235	iscA2	RF_0843	-	Iron-sulfur cluster assembly accessory protein
844	 37.37	+1	892160..892555	-	131	67459236	iscU	RF_0844	-	scaffold protein
845	 37.19	+1	892692..893960	-	422	67459237	iscS	RF_0845	-	cysteine desulfurase
846	 32.43	0	894104..895213	-	369	67459238	spl1	RF_0846	-	NifS protein
847	 31.43	0	895210..895629	-	139	67459239	iscR	RF_0847	-	Iron-sulfur cluster assembly transcription factor IscR
848	 30.63	0	896020..897390	-	456	67459240	-	RF_0848	-	hypothetical protein
849	 24.51	-1	897415..898287	-	290	67459241	-	RF_0849	-	hypothetical protein
850	 28.87	0	899124..901049	-	641	67459242	-	RF_0850	-	hypothetical protein
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.