IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
725	 35.67	0	785179..788298	+	1039	67459117	sca4	RF_0725	-	cell surface antigen
726	 31.30	0	788512..788904	-	130	67459118	hipB	RF_0726	-	transcriptional regulator
727	 27.05	-1	789429..790256	+	275	67459119	rbn	RF_0727	-	ribonuclease BN, putative
728	 28.54	0	790420..791253	-	277	67459120	glnA	RF_0728	-	glutamine synthetase
729	 27.52	-1	791252..791974	+	240	67459121	-	RF_0729	-	hypothetical protein
730	 32.79	0	792146..792697	+	183	67459122	def2	RF_0730	-	polypeptide deformylase
731	 31.37	0	792922..793176	+	84	67459123	-	RF_0731	-	antitoxin of toxin-antitoxin system Phd
732	 37.78	+1	793180..793584	+	134	67459124	-	RF_0732	-	toxin of toxin-antitoxin system
733	 36.00	+1	793585..793884	-	99	67459125	addA	RF_0733	-	erythrocyte adducin alpha subunit
734	 31.07	0	794435..796114	-	559	67459126	-	RF_0734	-	hypothetical protein
735	 34.66	0	796314..798950	-	878	67459127	ppdK	RF_0735	-	pyruvate phosphate dikinase
736	 29.60	0	800080..800748	+	222	67459128	-	RF_0736	-	glutathione S-transferase
737	 27.24	-1	800855..801166	-	103	67459129	-	RF_0737	-	biotin-protein ligase
738	 28.86	0	801338..801538	-	66	67459130	-	RF_0738	-	biotin-protein ligase
739	 33.51	0	801614..802186	+	190	67459131	bioY2	RF_0739	-	BioY family protein
740	 35.28	0	802409..803692	+	427	67459132	folC	RF_0740	-	folylpolyglutamate synthase
741	 33.78	0	803783..804451	+	222	67459133	sodB	RF_0741	-	superoxide dismutase
742	 35.50	0	804456..804824	+	122	67459134	-	RF_0742	-	alpha-beta hydrolase family esterase
743	 31.45	0	804933..806045	+	370	67459135	-	RF_0743	-	alpha-beta hydrolase family esterase
744	 33.71	0	806133..806936	+	267	67459136	birA	RF_0744	-	biotin--protein ligase
745	 28.30	0	807019..807594	+	191	67459137	-	RF_0745	-	hypothetical protein
746	 29.04	0	807815..808210	+	131	67459138	-	RF_0746	-	hypothetical protein
747	 28.63	0	808331..809074	+	247	67459139	-	RF_0747	-	hypothetical protein
748	 27.75	-1	809053..809661	+	202	67459140	-	RF_0748	-	hypothetical protein
749	 34.41	0	809940..811049	+	369	67459141	-	RF_0749	-	HK97 family phage prohead protease/phage major capsid protein
750	 35.52	0	811007..811417	+	136	67459142	-	RF_0750	-	HK97 family phage prohead protease/phage major capsid protein
751	 30.85	0	811541..811741	+	66	67459143	-	RF_0751	-	hypothetical protein
752	 23.63	-2	811870..812271	+	133	67459144	-	RF_0752	-	hypothetical protein
753	 32.32	0	812273..812665	+	130	67459145	-	RF_0753	-	nucleotidyltransferase substrate binding protein
754	 25.61	-1	812652..812936	+	94	67459146	-	RF_0754	-	hypothetical protein
755	 33.17	0	812952..813551	+	199	67459147	-	RF_0755	-	hypothetical protein
756	 28.86	0	813567..813968	+	133	67459148	-	RF_0756	-	hypothetical protein
757	 27.84	-1	814191..814481	+	96	67459149	-	RF_0757	-	hypothetical protein
758	 20.69	-2	814485..814658	+	57	67459150	-	RF_0758	-	hypothetical protein
759	 27.03	-1	814645..814977	+	110	67459151	-	RF_0759	-	hypothetical protein
760	 35.36	0	815155..815598	+	147	67459152	infC	RF_0760	-	translation initiation factor IF-3
761	 35.67	0	815786..817024	+	412	67459153	pdhC	RF_0761	-	branched-chain alpha-keto acid dehydrogenase subunit E2
762	 38.01	+1	817195..818262	+	355	67459154	prfA	RF_0762	-	peptide chain release factor 1
763	 33.62	0	818476..820239	+	587	67459155	recJ	RF_0763	-	single-stranded-DNA-specific exonuclease RecJ
764	 30.14	0	820495..821811	+	438	67459156	-	RF_0764	-	putative methyltransferase
765	 35.80	0	822398..823774	+	458	67459157	rho	RF_0765	-	transcription termination factor Rho
766	 33.66	0	823905..824819	+	304	67459158	sppA2	RF_0766	-	Signal peptide peptidase SppA
767	 27.57	-1	824822..825064	+	80	67459159	himD	RF_0767	-	integration host factor beta-subunit
768	 26.16	-1	825072..825629	+	185	67459160	-	RF_0768	-	hypothetical protein
769	 29.99	0	825901..826647	+	248	67459161	-	RF_0769	-	hypothetical protein
770	 33.18	0	826879..827538	+	219	67459162	cmk	RF_0770	-	cytidylate kinase
771	 33.33	0	827750..829456	+	568	67459163	rpsA	RF_0771	-	30S ribosomal protein S1
772	 35.15	0	829699..830304	+	201	67459164	clpP	RF_0772	-	ATP-dependent Clp protease proteolytic subunit
773	 30.71	0	830960..831454	+	164	67459165	-	RF_0773	-	transcription activator
774	 32.23	0	831458..832276	-	272	67459166	-	RF_0774	-	streptomycin 6-kinase
775	 31.12	0	832291..832833	+	180	67459167	-	RF_0775	-	acetyltransferase
776	 32.51	0	832830..833315	+	161	67459168	-	RF_0776	-	acetyltransferase
777	 31.50	0	833495..834202	+	235	67459169	-	RF_0777	-	metal-dependent hydrolase
778	 30.86	0	834199..834966	+	255	67459170	-	RF_0778	-	hypothetical protein
779	 30.56	0	835156..835407	+	83	67459171	-	RF_0779	-	antitoxin of toxin-antitoxin system Phd
780	 30.98	0	835833..836513	+	226	67459172	-	RF_0780	-	hypothetical protein
781	 35.80	0	836853..837095	+	80	67459173	-	RF_0781	-	hypothetical protein
782	 29.12	0	837539..838084	-	181	67459174	-	RF_0782	-	ankyrin repeat-containing protein
783	 29.32	0	838093..838740	-	215	67459175	-	RF_0783	-	ankyrin repeat-containing protein
784	 31.62	0	838757..839515	-	252	67459176	-	RF_0784	-	acetyltransferase
785	 40.75	+2	839828..840865	+	345	67459177	fni	RF_0785	-	isopentenyl pyrophosphate isomerase
786	 29.08	0	840939..841760	-	273	67459178	traC	RF_0786	-	DNA primase
787	 34.39	0	842150..842434	-	94	67459179	-	RF_0787	-	toxin of toxin-antitoxin system ParE
788	 30.27	0	842427..842687	-	86	67459180	-	RF_0788	-	antitoxin of toxin-antitoxin system Phd
789	 33.33	0	842763..842942	-	59	67459181	-	RF_0789	-	hypothetical protein
790	 32.20	0	842952..843392	-	146	67459182	-	RF_0790	-	hypothetical protein
791	 29.45	0	843842..844510	+	222	67459183	-	RF_0791	-	hypothetical protein
792	 29.50	0	844805..845065	-	86	67459184	-	RF_0792	-	toxin of toxin-antitoxin system
793	 31.62	0	845046..845687	-	213	67459185	-	RF_0793	-	phage-associated protein
794	 27.33	-1	845852..846883	-	343	67459186	-	RF_0794	-	hypothetical protein
795	 35.46	0	847412..847552	-	46	67459187	-	RF_0795	-	rRNA methylase
796	 34.58	0	847560..847961	-	133	67459188	-	RF_0796	-	rRNA methylase
797	 40.00	+2	848043..848192	-	49	67459189	-	RF_0797	-	hypothetical protein
798	 29.99	0	848444..849190	-	248	67459190	glmU	RF_0798	-	UDP-N-acetylglucosamine pyrophosphorylase
799	 34.65	0	849187..849945	-	252	67459191	-	RF_0799	-	hypothetical protein
800	 23.02	-2	850084..850209	-	41	67459192	rpmJ	RF_0800	-	50S ribosomal protein L36
801	 31.18	0	850744..851394	+	216	67459193	-	RF_0801	-	hypothetical protein
802	 28.10	-1	851719..852024	+	101	67459194	-	RF_0802	-	hypothetical protein
803	 34.52	0	852133..852972	+	279	67459195	mltE2	RF_0803	-	putative soluble lytic murein transglycosylase
804	 26.27	-1	852978..853586	+	202	67459196	-	RF_0804	-	hypothetical protein
805	 32.44	0	853769..854104	+	111	67459197	-	RF_0805	-	hypothetical protein
806	 31.53	0	854175..855005	+	276	67459198	bioC	RF_0806	-	biotin synthesis protein BioC
807	 38.99	+1	855267..856646	+	459	67459199	lpdA2	RF_0807	-	dihydrolipoamide dehydrogenase
808	 31.26	0	856871..857305	+	144	67459200	-	RF_0808	-	5-formyltetrahydrofolate cyclo-ligase
809	 27.42	-1	857758..858603	-	281	67459201	rnd	RF_0809	-	ribonuclease D
810	 31.85	0	858613..859491	-	292	67459202	-	RF_0810	-	hypothetical protein
811	 31.92	0	859517..860365	+	282	67459203	gcvT	RF_0811	-	glycine cleavage T-protein
812	 32.55	0	860494..860874	+	126	67459204	-	RF_0812	-	hypothetical protein
813	 30.28	0	860774..862213	+	479	67459205	-	RF_0813	-	hypothetical protein
814	 30.03	0	862557..864281	+	574	67459206	-	RF_0814	-	Na+/proline symporter and signal transduction histidine kinase
815	 31.49	0	864322..865296	+	324	67459207	-	RF_0815	-	Na+/proline symporter and signal transduction histidine kinase
816	 32.23	0	865433..866338	+	301	67459208	mccF2	RF_0816	-	microcin C7 resistance protein
817	 35.76	0	866335..867240	+	301	67459209	hemC	RF_0817	-	porphobilinogen deaminase
818	 31.16	0	867305..867580	+	91	67459210	-	RF_0818	-	hypothetical protein
819	 30.57	0	867690..868484	+	264	67459211	-	RF_0819	-	hypothetical protein
820	 29.35	0	868646..869272	-	208	67459212	-	RF_0820	-	hydrolase or acyltransferase
821	 30.74	0	869232..869501	-	89	67459213	-	RF_0821	-	hypothetical protein
822	 30.83	0	870001..870639	+	212	67459214	-	RF_0822	-	hypothetical protein
823	 31.46	0	870736..871056	+	106	67459215	-	RF_0823	-	hypothetical protein
824	 32.83	0	871343..872335	-	330	67459216	trpS	RF_0824	-	tryptophanyl-tRNA synthetase
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.