IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
662	 30.19	0	709684..710478	+	264	67459054	dsbA	RF_0662	-	Thiol:disulfide interchange protein DsbA
663	 26.67	-1	710644..711078	-	144	67459055	-	RF_0663	-	hypothetical protein
664	 40.50	+2	711766..712644	-	292	67459056	sucD	RF_0664	-	succinyl-CoA synthetase subunit alpha
665	 36.69	+1	712858..714018	-	386	67459057	sucC	RF_0665	-	succinyl-CoA synthetase subunit beta
666	 31.67	0	714256..714858	-	200	67459058	-	RF_0666	-	hypothetical protein
667	 34.07	0	714961..716997	-	678	67459059	-	RF_0667	-	acylamino-acid-releasing protein
668	 29.09	0	717128..717763	-	211	67459060	-	RF_0668	-	hypothetical protein
669	 26.72	-1	718096..718458	-	120	67459061	rbfA	RF_0669	-	ribosome-binding factor A
670	 24.65	-1	718462..718887	-	141	67459062	-	RF_0670	-	hypothetical protein
671	 26.05	-1	719069..719590	+	173	67459063	-	RF_0671	-	hypothetical protein
672	 34.62	0	719650..720273	+	207	67459064	recR	RF_0672	-	recombination protein RecR
673	 27.24	-1	720357..720635	+	92	67459065	-	RF_0673	-	hypothetical protein
674	 22.22	-2	720572..720895	-	107	67459066	-	RF_0674	-	hypothetical protein
675	 33.33	0	721217..721984	-	255	67459067	ppnK	RF_0675	-	inorganic polyphosphate/ATP-NAD kinase
676	 35.71	0	722071..723753	+	560	67459068	-	RF_0676	-	hypothetical protein
677	 32.82	0	723908..724873	+	321	67459069	gpsA	RF_0677	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
678	 24.18	-2	725021..725479	-	152	67459070	-	RF_0678	-	hypothetical protein
679	 30.54	0	725627..726556	+	309	67459071	-	RF_0679	-	permease
680	 27.38	-1	726615..727487	+	290	67459072	-	RF_0680	-	hydrolase or acyltransferase
681	 38.26	+1	727707..728639	+	310	67459073	trxB1	RF_0681	-	thioredoxin reductase
682	 28.76	0	728762..729658	+	298	67459074	-	RF_0682	-	hypothetical protein
683	 31.62	0	729716..730300	+	194	67459075	-	RF_0683	-	hypothetical protein
684	 34.59	0	730466..731737	+	423	67459076	gabD	RF_0684	-	succinate semialdehyde dehydrogenase
685	 27.27	-1	732138..732500	+	120	67459077	-	RF_0685	-	hypothetical protein
686	 31.44	0	732490..733335	+	281	67459078	lgtD	RF_0686	-	glycosyltransferase
687	 33.99	0	733515..735479	+	654	67459079	uvrD	RF_0687	-	DNA helicase II
688	 30.14	0	735570..736886	+	438	67459080	-	RF_0688	-	hypothetical protein
689	 31.33	0	736974..737522	+	182	67459081	-	RF_0689	-	hypothetical protein
690	 27.73	-1	737971..738327	+	118	67459082	-	RF_0690	-	hypothetical protein
691	 34.03	0	738493..739494	-	333	67459083	tdcB	RF_0691	-	threonine dehydratase
692	 34.66	0	739580..741916	+	778	67459084	lon	RF_0692	-	ATP-dependent protease La
693	 36.06	+1	742351..751719	+	3122	67459085	sca3	RF_0693	-	cell surface antigen Sca3
694	 25.42	-1	752069..752485	+	138	67459086	-	RF_0694	-	hypothetical protein
695	 29.23	0	752794..753402	-	202	67459087	-	RF_0695	-	hypothetical protein
696	 31.72	0	754682..754990	+	102	67459088	-	RF_0696	-	hypothetical protein
697	 27.98	-1	755109..755687	+	192	67459089	yhbH	RF_0697	-	sigma(54) modulation protein
698	 31.57	0	755687..756196	+	169	67459090	paaY	RF_0698	-	carbonic anhydrase
699	 32.44	0	756333..757226	-	297	67459091	folD	RF_0699	-	methylenetetrahydrofolate dehydrogenase
700	 35.81	0	757353..758360	-	335	67459092	trxB2	RF_0700	-	thioredoxin reductase
701	 32.16	0	758412..758837	-	141	67459093	-	RF_0701	-	toxin of toxin-antitoxin system
702	 27.27	-1	758824..759054	-	76	67459094	-	RF_0702	-	antitoxin of toxin-antitoxin system Phd
703	 36.93	+1	759261..759761	+	166	67459095	-	RF_0703	-	hypothetical protein
704	 29.22	0	759766..760203	+	145	67459096	-	RF_0704	-	hypothetical protein
705	 34.15	0	760315..761169	+	284	67459097	-	RF_0705	-	P pilus assembly protein FimD
706	 29.94	0	761214..762746	+	510	67459098	-	RF_0706	-	P pilus assembly protein FimD
707	 41.58	+2	762737..763318	+	193	67459099	-	RF_0707	-	hypothetical protein
708	 35.72	0	763715..764383	+	222	67459100	-	RF_0708	-	chitin binding domain-containing protein
709	 35.42	0	764806..766629	+	607	67459101	nrdA	RF_0709	-	ribonucleotide-diphosphate reductase subunit alpha
710	 37.09	+1	766795..767778	+	327	67459102	nrdF	RF_0710	-	ribonucleotide-diphosphate reductase subunit beta
711	 27.26	-1	767966..770815	+	949	67459103	-	RF_0711	-	hypothetical protein
712	 29.28	0	771038..772294	+	418	67459104	-	RF_0712	-	hypothetical protein
713	 27.98	-1	772373..772951	+	192	67459105	-	RF_0713	-	hypothetical protein
714	 31.08	0	773138..774067	-	309	67459106	miaA	RF_0714	-	tRNA delta(2)-isopentenylpyrophosphate transferase
715	 34.50	0	774280..774621	-	113	67459107	-	RF_0715	-	hypothetical protein
716	 34.65	0	774700..776142	-	480	67459108	exoC	RF_0716	-	phosphomannomutase
717	 33.61	0	776284..777015	-	243	67459109	abcT2	RF_0717	-	ABC transporter ATP-binding protein
718	 22.83	-2	777176..777613	-	145	67459110	-	RF_0718	-	hypothetical protein
719	 23.17	-2	777579..778178	-	199	67459111	-	RF_0719	-	hypothetical protein
720	 32.29	0	778184..779143	-	319	67459112	kpsF	RF_0720	-	KpsF protein
721	 35.16	0	779244..781487	-	747	67459113	pnp	RF_0721	-	polynucleotide phosphorylase/polyadenylase
722	 29.71	0	781629..781904	-	91	67459114	rpsO	RF_0722	-	30S ribosomal protein S15
723	 35.67	0	781926..782996	-	356	67459115	truB	RF_0723	-	tRNA pseudouridine synthase B
724	 30.01	0	783488..785023	+	511	67459116	tlc4	RF_0724	-	ADP,ATP carrier protein
725	 35.67	0	785179..788298	+	1039	67459117	sca4	RF_0725	-	cell surface antigen
726	 31.30	0	788512..788904	-	130	67459118	hipB	RF_0726	-	transcriptional regulator
727	 27.05	-1	789429..790256	+	275	67459119	rbn	RF_0727	-	ribonuclease BN, putative
728	 28.54	0	790420..791253	-	277	67459120	glnA	RF_0728	-	glutamine synthetase
729	 27.52	-1	791252..791974	+	240	67459121	-	RF_0729	-	hypothetical protein
730	 32.79	0	792146..792697	+	183	67459122	def2	RF_0730	-	polypeptide deformylase
731	 31.37	0	792922..793176	+	84	67459123	-	RF_0731	-	antitoxin of toxin-antitoxin system Phd
732	 37.78	+1	793180..793584	+	134	67459124	-	RF_0732	-	toxin of toxin-antitoxin system
733	 36.00	+1	793585..793884	-	99	67459125	addA	RF_0733	-	erythrocyte adducin alpha subunit
734	 31.07	0	794435..796114	-	559	67459126	-	RF_0734	-	hypothetical protein
735	 34.66	0	796314..798950	-	878	67459127	ppdK	RF_0735	-	pyruvate phosphate dikinase
736	 29.60	0	800080..800748	+	222	67459128	-	RF_0736	-	glutathione S-transferase
737	 27.24	-1	800855..801166	-	103	67459129	-	RF_0737	-	biotin-protein ligase
738	 28.86	0	801338..801538	-	66	67459130	-	RF_0738	-	biotin-protein ligase
739	 33.51	0	801614..802186	+	190	67459131	bioY2	RF_0739	-	BioY family protein
740	 35.28	0	802409..803692	+	427	67459132	folC	RF_0740	-	folylpolyglutamate synthase
741	 33.78	0	803783..804451	+	222	67459133	sodB	RF_0741	-	superoxide dismutase
742	 35.50	0	804456..804824	+	122	67459134	-	RF_0742	-	alpha-beta hydrolase family esterase
743	 31.45	0	804933..806045	+	370	67459135	-	RF_0743	-	alpha-beta hydrolase family esterase
744	 33.71	0	806133..806936	+	267	67459136	birA	RF_0744	-	biotin--protein ligase
745	 28.30	0	807019..807594	+	191	67459137	-	RF_0745	-	hypothetical protein
746	 29.04	0	807815..808210	+	131	67459138	-	RF_0746	-	hypothetical protein
747	 28.63	0	808331..809074	+	247	67459139	-	RF_0747	-	hypothetical protein
748	 27.75	-1	809053..809661	+	202	67459140	-	RF_0748	-	hypothetical protein
749	 34.41	0	809940..811049	+	369	67459141	-	RF_0749	-	HK97 family phage prohead protease/phage major capsid protein
750	 35.52	0	811007..811417	+	136	67459142	-	RF_0750	-	HK97 family phage prohead protease/phage major capsid protein
751	 30.85	0	811541..811741	+	66	67459143	-	RF_0751	-	hypothetical protein
752	 23.63	-2	811870..812271	+	133	67459144	-	RF_0752	-	hypothetical protein
753	 32.32	0	812273..812665	+	130	67459145	-	RF_0753	-	nucleotidyltransferase substrate binding protein
754	 25.61	-1	812652..812936	+	94	67459146	-	RF_0754	-	hypothetical protein
755	 33.17	0	812952..813551	+	199	67459147	-	RF_0755	-	hypothetical protein
756	 28.86	0	813567..813968	+	133	67459148	-	RF_0756	-	hypothetical protein
757	 27.84	-1	814191..814481	+	96	67459149	-	RF_0757	-	hypothetical protein
758	 20.69	-2	814485..814658	+	57	67459150	-	RF_0758	-	hypothetical protein
759	 27.03	-1	814645..814977	+	110	67459151	-	RF_0759	-	hypothetical protein
760	 35.36	0	815155..815598	+	147	67459152	infC	RF_0760	-	translation initiation factor IF-3
761	 35.67	0	815786..817024	+	412	67459153	pdhC	RF_0761	-	branched-chain alpha-keto acid dehydrogenase subunit E2
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.