IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
561	 23.43	-2	599602..599904	-	100	67458953	-	RF_0561	-	hypothetical protein
562	 31.73	0	599908..600156	-	82	67458954	-	RF_0562	-	hypothetical protein
563	 34.13	0	600265..600768	-	167	67458955	nuoE	RF_0563	-	NADH dehydrogenase subunit E
564	 38.69	+1	600944..602119	-	391	67458956	nuoD	RF_0564	-	NADH dehydrogenase subunit D
565	 34.29	0	602257..602880	-	207	67458957	nuoC	RF_0565	-	NADH dehydrogenase subunit C
566	 41.90	+2	602858..603382	-	174	67458958	nuoB	RF_0566	-	NADH dehydrogenase subunit B
567	 32.26	0	603387..603758	-	123	67458959	nuoA	RF_0567	-	NADH dehydrogenase subunit A
568	 32.03	0	603910..605133	-	407	67458960	-	RF_0568	-	hypothetical protein
569	 28.90	0	605134..605607	-	157	67458961	-	RF_0569	-	hypothetical protein
570	 33.73	0	605932..607191	+	419	67458962	-	RF_0570	-	Phage uncharacterized protein
571	 32.68	0	607594..608514	+	306	67458963	xerD	RF_0571	-	site-specific tyrosine recombinase XerD
572	 26.61	-1	608597..609667	+	356	67458964	-	RF_0572	-	hypothetical protein
573	 27.88	-1	609779..609943	+	54	67458965	-	RF_0573	-	hypothetical protein
574	 25.67	-1	610000..610821	+	273	67458966	-	RF_0574	-	hypothetical protein
575	 34.99	0	611288..612070	-	260	67458967	fabI	RF_0575	-	enoyl-(acyl carrier protein) reductase
576	 30.11	0	612146..613636	+	496	67458968	lnt	RF_0576	-	apolipoprotein N-acyltransferase
577	 27.44	-1	613769..614260	+	163	67458969	-	RF_0577	-	hypothetical protein
578	 33.21	0	615504..616301	+	265	67458970	-	RF_0578	-	hypothetical protein
579	 35.13	0	616306..617139	+	277	67458971	-	RF_0579	-	ABC transporter permease protein
580	 28.76	0	617306..618223	-	305	67458972	-	RF_0580	-	ankyrin repeat-containing protein
581	 33.33	0	618383..618925	-	180	67458973	dsbB	RF_0581	-	disulfide bond formation protein DsbB
582	 37.58	+1	619107..620684	+	525	67458974	lysK	RF_0582	-	lysyl-tRNA synthetase
583	 31.62	0	620962..621894	+	310	67458975	-	RF_0583	-	permease
584	 35.94	+1	622072..624375	+	767	67458976	tme	RF_0584	-	malic enzyme
585	 30.26	0	624596..626545	+	649	67458977	-	RF_0585	-	hypothetical protein
586	 30.55	0	626797..628017	+	406	67458978	proP3	RF_0586	-	proline/betaine transporter
587	 30.45	0	628286..628528	-	80	67458979	-	RF_0587	-	transposase
588	 33.33	0	628603..629556	-	317	67458980	-	RF_0588	-	transposase
589	 29.79	0	629738..632983	-	1081	67458981	-	RF_0589	-	hypothetical protein
590	 36.30	+1	633116..634060	-	314	67458982	mdh	RF_0590	-	malate dehydrogenase
591	 30.58	0	634352..635077	+	241	67458983	-	RF_0591	-	ankyrin repeat-containing protein
592	 31.89	0	635368..636891	-	507	67458984	tlc2	RF_0592	-	ADP,ATP carrier protein
593	 32.40	0	637330..638943	-	537	67458985	pyrG	RF_0593	-	CTP synthetase
594	 35.09	0	638950..639690	-	246	67458986	kdsB	RF_0594	-	3-deoxy-manno-octulosonate cytidylyltransferase
595	 32.86	0	640135..640560	-	141	67458987	mutT	RF_0595	-	ADP-ribose pyrophosphatase MutT
596	 25.67	-1	640761..641504	+	247	67458988	-	RF_0596	-	hypothetical protein
597	 30.16	0	641501..642067	+	188	67458989	-	RF_0597	-	alkylated DNA repair protein
598	 36.62	+1	642132..643712	+	526	67458990	-	RF_0598	-	hypothetical protein
599	 35.08	0	643705..644277	+	190	67458991	folE	RF_0599	-	GTP cyclohydrolase I
600	 35.12	0	644449..645732	+	427	67458992	proS	RF_0600	-	prolyl-tRNA synthetase
601	 32.46	0	645796..646023	+	75	67458993	-	RF_0601	-	antitoxin of toxin-antitoxin system StbD
602	 23.26	-2	646166..646294	+	42	67458994	-	RF_0602	-	cytotoxic translational repressor of toxin-antitoxin system RelE
603	 28.75	0	646319..646558	+	79	67458995	-	RF_0603	-	hypothetical protein
604	 34.15	0	646715..647326	+	203	67458996	ruvA	RF_0604	-	Holliday junction DNA helicase motor protein
605	 28.52	0	647425..648297	+	290	67458997	-	RF_0605	-	hypothetical protein
606	 37.71	+1	648360..649388	+	342	67458998	ruvB	RF_0606	-	Holliday junction DNA helicase B
607	 33.39	0	649381..651144	+	587	67458999	msbA1	RF_0607	-	multidrug resistance protein
608	 33.33	0	651320..652564	+	414	67459000	ampG4	RF_0608	-	AmpG protein
609	 34.96	0	652755..653675	+	306	67459001	dacF	RF_0609	-	penicillin-binding protein DacF precursor
610	 33.33	0	653865..653990	-	41	67459002	-	RF_0610	-	hypothetical protein
611	 27.99	-1	654029..654721	-	230	67459003	rlpA	RF_0611	-	rare lipoprotein A precursor
612	 29.27	0	654699..655313	-	204	67459004	-	RF_0612	-	hypothetical protein
613	 28.18	0	655632..656174	-	180	67459005	ispZ	RF_0613	-	intracellular septation protein A
614	 30.86	0	656204..657052	-	282	67459006	-	RF_0614	-	FTR1 family protein
615	 25.72	-1	657062..657442	-	126	67459007	-	RF_0615	-	hypothetical protein
616	 29.72	0	657653..658648	-	331	67459008	-	RF_0616	-	hypothetical protein
617	 30.30	0	658847..659473	+	208	67459009	-	RF_0617	-	protocatechuate-3,4-dioxygenase, beta subunit
618	 28.86	0	659679..660326	+	215	67459010	tlpA	RF_0618	-	Thiol:disulfide interchange protein TlpA
619	 33.11	0	660474..661388	+	304	67459011	sppA1	RF_0619	-	Signal peptide peptidase SppA
620	 40.04	+2	661390..661836	+	148	67459012	dut	RF_0620	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
621	 32.13	0	661993..664068	+	691	67459013	mltE1	RF_0621	-	soluble lytic murein transglycosylase precursor
622	 31.27	0	664144..664869	+	241	67459014	-	RF_0622	-	hypothetical protein
623	 31.97	0	665371..666324	+	317	67459015	mccF	RF_0623	-	microcin C7 self-immunity protein
624	 28.86	0	666446..669016	-	856	67459016	-	RF_0624	-	hypothetical protein
625	 28.09	-1	669168..669434	+	88	67459017	-	RF_0625	-	hypothetical protein
626	 36.06	+1	669573..670451	-	292	67459018	-	RF_0626	-	glutamine amidotransferase
627	 41.21	+2	670636..672234	-	532	67459019	coxA	RF_0627	-	cytochrome c oxidase polypeptide I
628	 22.50	-2	672484..673203	-	239	67459020	-	RF_0628	-	hypothetical protein
629	 36.39	+1	673654..674601	-	315	67459021	coxB	RF_0629	-	cytochrome c oxidase polypeptide II
630	 27.39	-1	674685..675239	-	184	67459022	tagD	RF_0630	-	glycerol-3-phosphate cytidyltransferase TagD
631	 31.65	0	675424..676788	+	454	67459023	nlpD2	RF_0631	-	membrane proteins related to metalloendopeptidase
632	 32.08	0	676817..677533	+	238	67459024	lspA	RF_0632	-	lipoprotein signal peptidase
633	 33.73	0	677676..677924	+	82	67459025	-	RF_0633	-	hypothetical protein
634	 31.63	0	678060..679409	+	449	67459026	murD	RF_0634	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
635	 34.63	0	679469..680623	+	384	67459027	ftsW	RF_0635	-	cell division protein FtsW
636	 30.93	0	680620..681702	+	360	67459028	murG	RF_0636	-	N-acetylglucosaminyl transferase
637	 31.35	0	681951..682607	+	218	67459029	-	RF_0637	-	hypothetical protein
638	 32.69	0	683055..683519	+	154	67459030	-	RF_0638	-	hypothetical protein
639	 38.60	+1	683658..685118	-	486	67459031	-	RF_0639	-	RND family efflux transporter
640	 37.19	+1	685088..685813	-	241	67459032	-	RF_0640	-	RND family efflux transporter
641	 39.46	+1	685831..686826	-	331	67459033	-	RF_0641	-	RND family efflux transporter
642	 35.48	0	686973..688232	-	419	67459034	mfp	RF_0642	-	RND family transporter membrane-fusion protein
643	 35.70	0	688389..689780	-	463	67459035	-	RF_0643	-	RND efflux system, outer membrane protein
644	 29.30	0	689991..691007	-	338	67459036	-	RF_0644	-	glycosyltransferase
645	 34.32	0	691091..691903	+	270	67459037	dapF	RF_0645	-	diaminopimelate epimerase
646	 37.05	+1	691878..693143	+	421	67459038	-	RF_0646	-	MiaB-like tRNA modifying enzyme
647	 32.95	0	693373..694422	+	349	162022122	pheS	RF_0647	-	phenylalanyl-tRNA synthetase subunit alpha
648	 34.11	0	694419..696875	+	818	67459040	pheT	RF_0648	-	phenylalanyl-tRNA synthetase subunit beta
649	 32.02	0	696880..698019	+	379	67459041	dnaN	RF_0649	-	DNA polymerase III subunit beta
650	 33.93	0	698212..698718	+	168	67459042	-	RF_0650	-	hypothetical protein
651	 36.32	+1	698909..701416	+	835	67459043	leuS	RF_0651	-	leucyl-tRNA synthetase
652	 34.49	0	701601..702119	-	172	67459044	-	RF_0652	-	hypothetical protein
653	 31.05	0	702277..702888	-	203	67459045	rnd2	RF_0653	-	ribonuclease D
654	 29.32	0	703095..703418	-	107	67459046	-	RF_0654	-	hypothetical protein
655	 28.36	0	703527..704210	-	227	67459047	cdsA	RF_0655	-	phosphatidate cytidylyltransferase
656	 30.37	0	704170..704877	-	235	67459048	uppS	RF_0656	-	undecaprenyl pyrophosphate synthetase
657	 26.56	-1	704991..706304	-	437	67459049	envZ	RF_0657	-	osmolarity sensor protein EnvZ
658	 30.40	0	706279..706959	-	226	67459050	ompR	RF_0658	-	PetR protein
659	 33.91	0	707170..708042	+	290	67459051	ilvE	RF_0659	-	branched-chain amino acid aminotransferase
660	 33.90	0	708190..709074	+	294	67459052	dapA	RF_0660	-	dihydrodipicolinate synthase
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.