IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
529	 33.71	0	562734..564077	-	447	67458921	gltX	RF_0529	-	glutamyl-tRNA synthetase
530	 35.05	0	564265..566595	-	776	67458922	topA	RF_0530	-	DNA topoisomerase I
531	 33.42	0	566795..567943	-	382	67458923	dprA	RF_0531	-	putative DNA processing protein DprA
532	 35.47	0	568114..568722	-	202	67458924	tdpX1	RF_0532	-	thioredoxin peroxidase 1
533	 36.32	+1	568798..569733	-	311	67458925	hflC1	RF_0533	-	membrane protease subunit stomatin/prohibitin-like protein
534	 28.81	0	570104..571672	-	522	67458926	-	RF_0534	-	hypothetical protein
535	 31.83	0	571708..572172	+	154	67458927	-	RF_0535	-	Holliday junction resolvase-like protein
536	 33.33	0	572451..572612	+	53	67458928	-	RF_0536	-	plasmid maintenance system antidote protein
537	 21.67	-2	572700..572939	+	79	67458929	-	RF_0537	-	AbrB family transcriptional regulator
538	 35.08	0	573036..573893	+	285	67458930	-	RF_0538	-	dTDP-4-dehydrorhamnose reductase
539	 35.38	0	574092..575117	+	341	67458931	capD	RF_0539	-	CapD protein
540	 36.24	+1	575110..576243	+	377	67458932	rffE	RF_0540	-	UDP-N-acetylglucosamine 2-epimerase
541	 27.76	-1	576203..576955	+	250	67458933	-	RF_0541	-	hypothetical protein
542	 27.35	-1	577562..578230	+	222	67458934	-	RF_0542	-	hypothetical protein
543	 27.69	-1	578677..580485	+	602	67458935	-	RF_0543	-	glycosyltransferase
544	 32.43	0	580490..581485	-	331	67458936	-	RF_0544	-	RND family efflux transporter MFP subunit
545	 28.39	0	581921..582688	-	255	67458937	-	RF_0545	-	hypothetical protein
546	 28.59	0	582698..583456	-	252	67458938	-	RF_0546	-	hydrolase or acyltransferase
547	 32.74	0	583489..584661	+	390	67458939	-	RF_0547	-	glycosyltransferase
548	 27.38	-1	584707..585495	-	262	67458940	-	RF_0548	-	ABC transporter, ATP-binding protein
549	 34.79	0	586704..587321	-	205	162022123	rpsD	RF_0549	-	30S ribosomal protein S4
550	 33.01	0	587439..588356	+	305	67458942	cyoB	RF_0550	-	protoheme IX farnesyltransferase
551	 31.74	0	588483..589358	-	291	67458943	-	RF_0551	-	putative lyase
552	 27.71	-1	589474..589953	+	159	67458944	-	RF_0552	-	hypothetical protein
553	 29.85	0	590865..593390	-	841	67458945	asmA	RF_0553	-	Outer membrane assembly protein
554	 29.84	0	593667..594611	+	314	67458946	-	RF_0554	-	transposase
555	 26.71	-1	594617..595114	-	165	67458947	rimM	RF_0555	-	16S rRNA-processing protein
556	 26.27	-1	595177..597810	+	877	67458948	-	RF_0556	-	hypothetical protein
557	 32.51	0	597824..598066	+	80	67458949	xseB	RF_0557	-	exodeoxyribonuclease VII small subunit
558	 33.05	0	598139..598486	+	115	67458950	-	RF_0558	-	hypothetical protein
559	 31.95	0	598513..598947	+	144	67458951	-	RF_0559	-	hypothetical protein
560	 35.39	0	599076..599609	-	177	67458952	mpg	RF_0560	-	3-methyladenine DNA glycosylase
561	 23.43	-2	599602..599904	-	100	67458953	-	RF_0561	-	hypothetical protein
562	 31.73	0	599908..600156	-	82	67458954	-	RF_0562	-	hypothetical protein
563	 34.13	0	600265..600768	-	167	67458955	nuoE	RF_0563	-	NADH dehydrogenase subunit E
564	 38.69	+1	600944..602119	-	391	67458956	nuoD	RF_0564	-	NADH dehydrogenase subunit D
565	 34.29	0	602257..602880	-	207	67458957	nuoC	RF_0565	-	NADH dehydrogenase subunit C
566	 41.90	+2	602858..603382	-	174	67458958	nuoB	RF_0566	-	NADH dehydrogenase subunit B
567	 32.26	0	603387..603758	-	123	67458959	nuoA	RF_0567	-	NADH dehydrogenase subunit A
568	 32.03	0	603910..605133	-	407	67458960	-	RF_0568	-	hypothetical protein
569	 28.90	0	605134..605607	-	157	67458961	-	RF_0569	-	hypothetical protein
570	 33.73	0	605932..607191	+	419	67458962	-	RF_0570	-	Phage uncharacterized protein
571	 32.68	0	607594..608514	+	306	67458963	xerD	RF_0571	-	site-specific tyrosine recombinase XerD
572	 26.61	-1	608597..609667	+	356	67458964	-	RF_0572	-	hypothetical protein
573	 27.88	-1	609779..609943	+	54	67458965	-	RF_0573	-	hypothetical protein
574	 25.67	-1	610000..610821	+	273	67458966	-	RF_0574	-	hypothetical protein
575	 34.99	0	611288..612070	-	260	67458967	fabI	RF_0575	-	enoyl-(acyl carrier protein) reductase
576	 30.11	0	612146..613636	+	496	67458968	lnt	RF_0576	-	apolipoprotein N-acyltransferase
577	 27.44	-1	613769..614260	+	163	67458969	-	RF_0577	-	hypothetical protein
578	 33.21	0	615504..616301	+	265	67458970	-	RF_0578	-	hypothetical protein
579	 35.13	0	616306..617139	+	277	67458971	-	RF_0579	-	ABC transporter permease protein
580	 28.76	0	617306..618223	-	305	67458972	-	RF_0580	-	ankyrin repeat-containing protein
581	 33.33	0	618383..618925	-	180	67458973	dsbB	RF_0581	-	disulfide bond formation protein DsbB
582	 37.58	+1	619107..620684	+	525	67458974	lysK	RF_0582	-	lysyl-tRNA synthetase
583	 31.62	0	620962..621894	+	310	67458975	-	RF_0583	-	permease
584	 35.94	+1	622072..624375	+	767	67458976	tme	RF_0584	-	malic enzyme
585	 30.26	0	624596..626545	+	649	67458977	-	RF_0585	-	hypothetical protein
586	 30.55	0	626797..628017	+	406	67458978	proP3	RF_0586	-	proline/betaine transporter
587	 30.45	0	628286..628528	-	80	67458979	-	RF_0587	-	transposase
588	 33.33	0	628603..629556	-	317	67458980	-	RF_0588	-	transposase
589	 29.79	0	629738..632983	-	1081	67458981	-	RF_0589	-	hypothetical protein
590	 36.30	+1	633116..634060	-	314	67458982	mdh	RF_0590	-	malate dehydrogenase
591	 30.58	0	634352..635077	+	241	67458983	-	RF_0591	-	ankyrin repeat-containing protein
592	 31.89	0	635368..636891	-	507	67458984	tlc2	RF_0592	-	ADP,ATP carrier protein
593	 32.40	0	637330..638943	-	537	67458985	pyrG	RF_0593	-	CTP synthetase
594	 35.09	0	638950..639690	-	246	67458986	kdsB	RF_0594	-	3-deoxy-manno-octulosonate cytidylyltransferase
595	 32.86	0	640135..640560	-	141	67458987	mutT	RF_0595	-	ADP-ribose pyrophosphatase MutT
596	 25.67	-1	640761..641504	+	247	67458988	-	RF_0596	-	hypothetical protein
597	 30.16	0	641501..642067	+	188	67458989	-	RF_0597	-	alkylated DNA repair protein
598	 36.62	+1	642132..643712	+	526	67458990	-	RF_0598	-	hypothetical protein
599	 35.08	0	643705..644277	+	190	67458991	folE	RF_0599	-	GTP cyclohydrolase I
600	 35.12	0	644449..645732	+	427	67458992	proS	RF_0600	-	prolyl-tRNA synthetase
601	 32.46	0	645796..646023	+	75	67458993	-	RF_0601	-	antitoxin of toxin-antitoxin system StbD
602	 23.26	-2	646166..646294	+	42	67458994	-	RF_0602	-	cytotoxic translational repressor of toxin-antitoxin system RelE
603	 28.75	0	646319..646558	+	79	67458995	-	RF_0603	-	hypothetical protein
604	 34.15	0	646715..647326	+	203	67458996	ruvA	RF_0604	-	Holliday junction DNA helicase motor protein
605	 28.52	0	647425..648297	+	290	67458997	-	RF_0605	-	hypothetical protein
606	 37.71	+1	648360..649388	+	342	67458998	ruvB	RF_0606	-	Holliday junction DNA helicase B
607	 33.39	0	649381..651144	+	587	67458999	msbA1	RF_0607	-	multidrug resistance protein
608	 33.33	0	651320..652564	+	414	67459000	ampG4	RF_0608	-	AmpG protein
609	 34.96	0	652755..653675	+	306	67459001	dacF	RF_0609	-	penicillin-binding protein DacF precursor
610	 33.33	0	653865..653990	-	41	67459002	-	RF_0610	-	hypothetical protein
611	 27.99	-1	654029..654721	-	230	67459003	rlpA	RF_0611	-	rare lipoprotein A precursor
612	 29.27	0	654699..655313	-	204	67459004	-	RF_0612	-	hypothetical protein
613	 28.18	0	655632..656174	-	180	67459005	ispZ	RF_0613	-	intracellular septation protein A
614	 30.86	0	656204..657052	-	282	67459006	-	RF_0614	-	FTR1 family protein
615	 25.72	-1	657062..657442	-	126	67459007	-	RF_0615	-	hypothetical protein
616	 29.72	0	657653..658648	-	331	67459008	-	RF_0616	-	hypothetical protein
617	 30.30	0	658847..659473	+	208	67459009	-	RF_0617	-	protocatechuate-3,4-dioxygenase, beta subunit
618	 28.86	0	659679..660326	+	215	67459010	tlpA	RF_0618	-	Thiol:disulfide interchange protein TlpA
619	 33.11	0	660474..661388	+	304	67459011	sppA1	RF_0619	-	Signal peptide peptidase SppA
620	 40.04	+2	661390..661836	+	148	67459012	dut	RF_0620	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
621	 32.13	0	661993..664068	+	691	67459013	mltE1	RF_0621	-	soluble lytic murein transglycosylase precursor
622	 31.27	0	664144..664869	+	241	67459014	-	RF_0622	-	hypothetical protein
623	 31.97	0	665371..666324	+	317	67459015	mccF	RF_0623	-	microcin C7 self-immunity protein
624	 28.86	0	666446..669016	-	856	67459016	-	RF_0624	-	hypothetical protein
625	 28.09	-1	669168..669434	+	88	67459017	-	RF_0625	-	hypothetical protein
626	 36.06	+1	669573..670451	-	292	67459018	-	RF_0626	-	glutamine amidotransferase
627	 41.21	+2	670636..672234	-	532	67459019	coxA	RF_0627	-	cytochrome c oxidase polypeptide I
628	 22.50	-2	672484..673203	-	239	67459020	-	RF_0628	-	hypothetical protein
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.