IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
452	 33.61	0	481300..482022	-	240	67458844	-	RF_0452	-	MFS type sugar transporter
453	 34.44	0	482156..483328	-	390	67458845	rodA	RF_0453	-	rod shape-determining protein RodA
454	 31.94	0	483444..485522	-	692	67458846	ptrB	RF_0454	-	protease II
455	 30.07	0	485589..487121	-	510	67458847	nuoL3	RF_0455	-	putative monovalent cation/H+ antiporter subunit D
456	 29.38	0	487123..487527	-	134	67458848	vapC1	RF_0456	-	toxin of toxin-antitoxin system VapC
457	 34.62	0	487518..487829	-	103	67458849	vapB1	RF_0457	-	antitoxin of toxin-antitoxin system VapB
458	 30.46	0	487874..489337	-	487	67458850	nuoL2	RF_0458	-	putative monovalent cation/H+ antiporter subunit D
459	 36.59	+1	489437..489559	-	40	67458851	-	RF_0459	-	hypothetical protein
460	 28.75	0	489624..490910	-	428	67458852	nuoN2	RF_0460	-	putative monovalent cation/H+ antiporter subunit D
461	 31.13	0	491050..491412	-	120	67458853	mnhC	RF_0461	-	putative monovalent cation/H+ antiporter subunit C
462	 35.72	0	491473..492225	-	250	67458854	virB9_1	RF_0462	-	VirB9 protein
463	 28.47	0	492227..492925	-	232	67458855	virB8_1	RF_0463	-	VirB8 protein
464	 32.22	0	493387..493566	+	59	67458856	-	RF_0464	-	hypothetical protein
465	 31.01	0	493616..494347	+	243	67458857	virB8_2	RF_0465	-	VirB8 protein
466	 25.58	-1	494334..494810	+	158	67458858	virB9_2	RF_0466	-	VirB9 protein precursor
467	 38.66	+1	494905..496350	+	481	67458859	virB10	RF_0467	-	VirB10 protein
468	 37.61	+1	496347..497351	+	334	67458860	virB11	RF_0468	-	VirB11 protein
469	 36.09	+1	497672..499447	+	591	67458861	virD4	RF_0469	-	VirD4 protein
470	 29.72	0	499457..500869	+	470	67458862	gppA	RF_0470	-	guanosine pentaphosphate phosphohydrolase
471	 35.15	0	501268..502425	+	385	67458863	-	RF_0471	-	Phage portal protein
472	 22.22	-2	502422..502709	+	95	67458864	-	RF_0472	-	hypothetical protein
473	 33.93	0	502901..503401	+	166	67458865	-	RF_0473	-	cell surface antigen-like protein Sca7
474	 33.94	0	503398..506040	+	880	67458866	-	RF_0474	-	cell surface antigen-like protein Sca7
475	 38.44	+1	506009..507535	+	508	67458867	-	RF_0475	-	cell surface antigen-like protein Sca7
476	 36.82	+1	507532..509940	+	802	67458868	-	RF_0476	-	cell surface antigen-like protein Sca7
477	 35.27	0	510075..512240	+	721	67458869	-	RF_0477	-	cell surface antigen-like protein Sca7
478	 32.37	0	512396..512707	+	103	67458870	-	RF_0478	-	cell surface antigen-like protein Sca7
479	 33.24	0	512704..513810	-	368	67458871	-	RF_0479	-	hypothetical protein
480	 22.71	-2	513992..514876	+	294	67458872	-	RF_0480	-	hypothetical protein
481	 28.96	0	514860..515705	+	281	67458873	-	RF_0481	-	hypothetical protein
482	 34.62	0	515934..516710	+	258	67458874	cysQ	RF_0482	-	3'(2'),5'-bisphosphate nucleotidase
483	 33.71	0	516886..519546	-	886	67458875	mutS	RF_0483	-	DNA mismatch repair protein
484	 26.59	-1	519606..519857	-	83	67458876	-	RF_0484	-	hypothetical protein
485	 28.71	0	519809..520630	-	273	67458877	-	RF_0485	-	hypothetical protein
486	 31.51	0	520697..521134	-	145	67458878	lacA	RF_0486	-	ribose-5-phosphate isomerase B
487	 31.84	0	521186..521854	+	222	67458879	nlpD1	RF_0487	-	membrane proteins related to metalloendopeptidase
488	 30.58	0	521855..522544	+	229	67458880	-	RF_0488	-	metal-dependent hydrolase
489	 27.50	-1	522563..522802	+	79	67458881	-	RF_0489	-	antitoxin of toxin-antitoxin stability system
490	 25.09	-1	522808..523074	+	88	67458882	-	RF_0490	-	toxin of toxin-antitoxin system
491	 36.38	+1	523092..523976	+	294	67458883	thyX	RF_0491	-	FAD-dependent thymidylate synthase
492	 37.30	+1	524171..525505	+	444	67458884	tolB	RF_0492	-	translocation protein TolB
493	 32.65	0	525904..526785	-	293	67458885	rpoH	RF_0493	-	RNA polymerase factor sigma-32
494	 31.91	0	526871..527434	+	187	67458886	cox11	RF_0494	-	cytochrome C oxidase assembly protein
495	 31.53	0	527459..528511	-	350	67458887	-	RF_0495	-	hypothetical protein
496	 40.71	+2	528722..529819	+	365	67458888	trmU	RF_0496	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
497	 35.12	0	529988..531385	+	465	67458889	atrC1	RF_0497	-	cationic amino acid transporter-1
498	 34.78	0	531673..532920	+	415	67458890	hisS	RF_0498	-	histidyl-tRNA synthetase
499	 29.78	0	532984..533715	+	243	67458891	-	RF_0499	-	ABC transporter ATP-binding protein
500	 31.15	0	533782..534606	+	274	67458892	-	RF_0500	-	ABC transporter ATP-binding protein
501	 29.07	0	535407..536156	-	249	67458893	-	RF_0501	-	hypothetical protein
502	 28.06	-1	536300..537058	-	252	67458894	-	RF_0502	-	hypothetical protein
503	 25.41	-1	537798..538403	-	201	67458895	-	RF_0503	-	hypothetical protein
504	 36.21	+1	538786..539514	+	242	67458896	tolQ	RF_0504	-	TolQ protein
505	 36.11	+1	539514..539945	+	143	67458897	tolR	RF_0505	-	TolR protein
506	 34.55	0	539935..540918	+	327	67458898	-	RF_0506	-	periplasmic protein TonB
507	 28.40	0	541448..542299	-	283	67458899	-	RF_0507	-	hypothetical protein
508	 27.64	-1	542439..543158	+	239	67458900	spoT2	RF_0508	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
509	 30.75	0	543109..544425	-	438	67458901	proP2	RF_0509	-	proline/betaine transporter
510	 33.46	0	544565..546100	-	511	67458902	aprE	RF_0510	-	alkaline protease secretion protein AprE
511	 35.78	0	546302..548056	-	584	67458903	aprD	RF_0511	-	alkaline protease secretion ATP-binding protein AprD
512	 33.04	0	548067..549083	-	338	67458904	asd	RF_0512	-	aspartate-semialdehyde dehydrogenase
513	 28.89	0	549080..549439	-	119	67458905	pkcI	RF_0513	-	protein kinase C inhibitor 1
514	 28.25	0	549574..549927	-	117	67458906	-	RF_0514	-	hypothetical protein
515	 35.15	0	550319..550867	+	182	67458907	hslV	RF_0515	-	ATP-dependent protease peptidase subunit
516	 35.03	0	550864..552216	+	450	67458908	hslU	RF_0516	-	ATP-dependent protease ATP-binding subunit
517	 33.33	0	552379..552519	+	46	67458909	-	RF_0517	-	hypothetical protein
518	 35.73	0	552665..553915	+	416	67458910	-	RF_0518	-	Mg chelatase-related protein
519	 32.14	0	554105..555277	+	390	67458911	lpxB	RF_0519	-	lipid-A-disaccharide synthase
520	 25.67	-1	555246..555545	-	99	67458912	-	RF_0520	-	hypothetical protein
521	 30.69	0	555904..556923	+	339	67458913	-	RF_0521	-	hypothetical protein
522	 29.41	0	557063..557368	+	101	67458914	cyaY	RF_0522	-	frataxin-like protein
523	 30.13	0	557365..558114	+	249	67458915	-	RF_0523	-	hypothetical protein
524	 31.25	0	558373..559140	+	255	67458916	-	RF_0524	-	hypothetical protein
525	 30.01	0	559127..560029	+	300	67458917	-	RF_0525	-	hypothetical protein
526	 30.94	0	560157..560741	+	194	67458918	bioY1	RF_0526	-	BioY family protein
527	 35.27	0	560751..561680	+	309	67458919	bioB	RF_0527	-	biotin synthase
528	 37.88	+1	561893..562288	+	131	67458920	-	RF_0528	-	hypothetical protein
529	 33.71	0	562734..564077	-	447	67458921	gltX	RF_0529	-	glutamyl-tRNA synthetase
530	 35.05	0	564265..566595	-	776	67458922	topA	RF_0530	-	DNA topoisomerase I
531	 33.42	0	566795..567943	-	382	67458923	dprA	RF_0531	-	putative DNA processing protein DprA
532	 35.47	0	568114..568722	-	202	67458924	tdpX1	RF_0532	-	thioredoxin peroxidase 1
533	 36.32	+1	568798..569733	-	311	67458925	hflC1	RF_0533	-	membrane protease subunit stomatin/prohibitin-like protein
534	 28.81	0	570104..571672	-	522	67458926	-	RF_0534	-	hypothetical protein
535	 31.83	0	571708..572172	+	154	67458927	-	RF_0535	-	Holliday junction resolvase-like protein
536	 33.33	0	572451..572612	+	53	67458928	-	RF_0536	-	plasmid maintenance system antidote protein
537	 21.67	-2	572700..572939	+	79	67458929	-	RF_0537	-	AbrB family transcriptional regulator
538	 35.08	0	573036..573893	+	285	67458930	-	RF_0538	-	dTDP-4-dehydrorhamnose reductase
539	 35.38	0	574092..575117	+	341	67458931	capD	RF_0539	-	CapD protein
540	 36.24	+1	575110..576243	+	377	67458932	rffE	RF_0540	-	UDP-N-acetylglucosamine 2-epimerase
541	 27.76	-1	576203..576955	+	250	67458933	-	RF_0541	-	hypothetical protein
542	 27.35	-1	577562..578230	+	222	67458934	-	RF_0542	-	hypothetical protein
543	 27.69	-1	578677..580485	+	602	67458935	-	RF_0543	-	glycosyltransferase
544	 32.43	0	580490..581485	-	331	67458936	-	RF_0544	-	RND family efflux transporter MFP subunit
545	 28.39	0	581921..582688	-	255	67458937	-	RF_0545	-	hypothetical protein
546	 28.59	0	582698..583456	-	252	67458938	-	RF_0546	-	hydrolase or acyltransferase
547	 32.74	0	583489..584661	+	390	67458939	-	RF_0547	-	glycosyltransferase
548	 27.38	-1	584707..585495	-	262	67458940	-	RF_0548	-	ABC transporter, ATP-binding protein
549	 34.79	0	586704..587321	-	205	162022123	rpsD	RF_0549	-	30S ribosomal protein S4
550	 33.01	0	587439..588356	+	305	67458942	cyoB	RF_0550	-	protoheme IX farnesyltransferase
551	 31.74	0	588483..589358	-	291	67458943	-	RF_0551	-	putative lyase
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.