IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
422	 28.33	0	446652..447890	-	412	67458814	-	RF_0422	-	hypothetical protein
423	 37.93	+1	447974..451258	-	1094	67458815	ileS	RF_0423	-	isoleucyl-tRNA synthetase
424	 26.01	-1	451474..451746	+	90	67458816	-	RF_0424	-	excinuclease ABC subunit C
425	 31.11	0	452057..452686	-	209	67458817	-	RF_0425	-	hypothetical protein
426	 35.82	0	452748..452948	+	66	67458818	rpsU	RF_0426	-	30S ribosomal protein S21
427	 31.33	0	453241..455040	+	599	67458819	ntrY	RF_0427	-	nitrogen regulation protein NtrY
428	 31.96	0	455163..456038	+	291	67458820	-	RF_0428	-	acetyltransferase
429	 32.37	0	458171..458587	+	138	67458821	-	RF_0429	-	putative lipoprotein
430	 27.48	-1	458899..459291	+	130	67458822	-	RF_0430	-	hypothetical protein
431	 29.50	0	459340..459939	+	199	67458823	-	RF_0431	-	hypothetical protein
432	 24.67	-1	460218..460367	+	49	67458824	-	RF_0432	-	hypothetical protein
433	 26.98	-1	460940..461899	+	319	67458825	corA	RF_0433	-	magnesium/cobalt transporter CorA
434	 28.49	0	462082..462639	+	185	67458826	-	RF_0434	-	hypothetical protein
435	 35.95	+1	462691..463302	+	203	67458827	-	RF_0435	-	transposase
436	 36.71	+1	463277..463720	+	147	67458828	-	RF_0436	-	transposase
437	 36.83	+1	463717..464517	+	266	67458829	-	RF_0437	-	transposase/IS protein
438	 33.74	0	465405..466136	+	243	67458830	spoT7	RF_0438	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
439	 31.27	0	466054..467361	-	435	67458831	-	RF_0439	-	MFS type sugar transporter
440	 28.31	0	467626..468342	+	238	67458832	spoT8	RF_0440	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
441	 30.89	0	468284..469591	-	435	67458833	-	RF_0441	-	MFS type sugar transporter
442	 32.30	0	470276..470950	-	224	67458834	-	RF_0442	-	hypothetical protein
443	 36.83	+1	471342..472313	-	323	67458835	-	RF_0443	-	hypothetical protein
444	 26.86	-1	472670..473719	-	349	67458836	-	RF_0444	-	TPR repeat-containing protein
445	 36.98	+1	474106..474516	+	136	67458837	-	RF_0445	-	hypothetical protein
446	 31.68	0	474604..475086	+	160	67458838	-	RF_0446	-	hypothetical protein
447	 29.90	0	475188..477050	+	620	67458839	-	RF_0447	-	NACHT domain-containing protein
448	 30.87	0	477280..478701	+	473	67458840	-	RF_0448	-	hypothetical protein
449	 27.33	-1	478898..479896	+	332	67458841	-	RF_0449	-	hypothetical protein
450	 31.34	0	480073..480774	+	233	67458842	spoT1	RF_0450	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
451	 27.08	-1	480716..481147	-	143	67458843	-	RF_0451	-	MFS type sugar transporter
452	 33.61	0	481300..482022	-	240	67458844	-	RF_0452	-	MFS type sugar transporter
453	 34.44	0	482156..483328	-	390	67458845	rodA	RF_0453	-	rod shape-determining protein RodA
454	 31.94	0	483444..485522	-	692	67458846	ptrB	RF_0454	-	protease II
455	 30.07	0	485589..487121	-	510	67458847	nuoL3	RF_0455	-	putative monovalent cation/H+ antiporter subunit D
456	 29.38	0	487123..487527	-	134	67458848	vapC1	RF_0456	-	toxin of toxin-antitoxin system VapC
457	 34.62	0	487518..487829	-	103	67458849	vapB1	RF_0457	-	antitoxin of toxin-antitoxin system VapB
458	 30.46	0	487874..489337	-	487	67458850	nuoL2	RF_0458	-	putative monovalent cation/H+ antiporter subunit D
459	 36.59	+1	489437..489559	-	40	67458851	-	RF_0459	-	hypothetical protein
460	 28.75	0	489624..490910	-	428	67458852	nuoN2	RF_0460	-	putative monovalent cation/H+ antiporter subunit D
461	 31.13	0	491050..491412	-	120	67458853	mnhC	RF_0461	-	putative monovalent cation/H+ antiporter subunit C
462	 35.72	0	491473..492225	-	250	67458854	virB9_1	RF_0462	-	VirB9 protein
463	 28.47	0	492227..492925	-	232	67458855	virB8_1	RF_0463	-	VirB8 protein
464	 32.22	0	493387..493566	+	59	67458856	-	RF_0464	-	hypothetical protein
465	 31.01	0	493616..494347	+	243	67458857	virB8_2	RF_0465	-	VirB8 protein
466	 25.58	-1	494334..494810	+	158	67458858	virB9_2	RF_0466	-	VirB9 protein precursor
467	 38.66	+1	494905..496350	+	481	67458859	virB10	RF_0467	-	VirB10 protein
468	 37.61	+1	496347..497351	+	334	67458860	virB11	RF_0468	-	VirB11 protein
469	 36.09	+1	497672..499447	+	591	67458861	virD4	RF_0469	-	VirD4 protein
470	 29.72	0	499457..500869	+	470	67458862	gppA	RF_0470	-	guanosine pentaphosphate phosphohydrolase
471	 35.15	0	501268..502425	+	385	67458863	-	RF_0471	-	Phage portal protein
472	 22.22	-2	502422..502709	+	95	67458864	-	RF_0472	-	hypothetical protein
473	 33.93	0	502901..503401	+	166	67458865	-	RF_0473	-	cell surface antigen-like protein Sca7
474	 33.94	0	503398..506040	+	880	67458866	-	RF_0474	-	cell surface antigen-like protein Sca7
475	 38.44	+1	506009..507535	+	508	67458867	-	RF_0475	-	cell surface antigen-like protein Sca7
476	 36.82	+1	507532..509940	+	802	67458868	-	RF_0476	-	cell surface antigen-like protein Sca7
477	 35.27	0	510075..512240	+	721	67458869	-	RF_0477	-	cell surface antigen-like protein Sca7
478	 32.37	0	512396..512707	+	103	67458870	-	RF_0478	-	cell surface antigen-like protein Sca7
479	 33.24	0	512704..513810	-	368	67458871	-	RF_0479	-	hypothetical protein
480	 22.71	-2	513992..514876	+	294	67458872	-	RF_0480	-	hypothetical protein
481	 28.96	0	514860..515705	+	281	67458873	-	RF_0481	-	hypothetical protein
482	 34.62	0	515934..516710	+	258	67458874	cysQ	RF_0482	-	3'(2'),5'-bisphosphate nucleotidase
483	 33.71	0	516886..519546	-	886	67458875	mutS	RF_0483	-	DNA mismatch repair protein
484	 26.59	-1	519606..519857	-	83	67458876	-	RF_0484	-	hypothetical protein
485	 28.71	0	519809..520630	-	273	67458877	-	RF_0485	-	hypothetical protein
486	 31.51	0	520697..521134	-	145	67458878	lacA	RF_0486	-	ribose-5-phosphate isomerase B
487	 31.84	0	521186..521854	+	222	67458879	nlpD1	RF_0487	-	membrane proteins related to metalloendopeptidase
488	 30.58	0	521855..522544	+	229	67458880	-	RF_0488	-	metal-dependent hydrolase
489	 27.50	-1	522563..522802	+	79	67458881	-	RF_0489	-	antitoxin of toxin-antitoxin stability system
490	 25.09	-1	522808..523074	+	88	67458882	-	RF_0490	-	toxin of toxin-antitoxin system
491	 36.38	+1	523092..523976	+	294	67458883	thyX	RF_0491	-	FAD-dependent thymidylate synthase
492	 37.30	+1	524171..525505	+	444	67458884	tolB	RF_0492	-	translocation protein TolB
493	 32.65	0	525904..526785	-	293	67458885	rpoH	RF_0493	-	RNA polymerase factor sigma-32
494	 31.91	0	526871..527434	+	187	67458886	cox11	RF_0494	-	cytochrome C oxidase assembly protein
495	 31.53	0	527459..528511	-	350	67458887	-	RF_0495	-	hypothetical protein
496	 40.71	+2	528722..529819	+	365	67458888	trmU	RF_0496	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
497	 35.12	0	529988..531385	+	465	67458889	atrC1	RF_0497	-	cationic amino acid transporter-1
498	 34.78	0	531673..532920	+	415	67458890	hisS	RF_0498	-	histidyl-tRNA synthetase
499	 29.78	0	532984..533715	+	243	67458891	-	RF_0499	-	ABC transporter ATP-binding protein
500	 31.15	0	533782..534606	+	274	67458892	-	RF_0500	-	ABC transporter ATP-binding protein
501	 29.07	0	535407..536156	-	249	67458893	-	RF_0501	-	hypothetical protein
502	 28.06	-1	536300..537058	-	252	67458894	-	RF_0502	-	hypothetical protein
503	 25.41	-1	537798..538403	-	201	67458895	-	RF_0503	-	hypothetical protein
504	 36.21	+1	538786..539514	+	242	67458896	tolQ	RF_0504	-	TolQ protein
505	 36.11	+1	539514..539945	+	143	67458897	tolR	RF_0505	-	TolR protein
506	 34.55	0	539935..540918	+	327	67458898	-	RF_0506	-	periplasmic protein TonB
507	 28.40	0	541448..542299	-	283	67458899	-	RF_0507	-	hypothetical protein
508	 27.64	-1	542439..543158	+	239	67458900	spoT2	RF_0508	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
509	 30.75	0	543109..544425	-	438	67458901	proP2	RF_0509	-	proline/betaine transporter
510	 33.46	0	544565..546100	-	511	67458902	aprE	RF_0510	-	alkaline protease secretion protein AprE
511	 35.78	0	546302..548056	-	584	67458903	aprD	RF_0511	-	alkaline protease secretion ATP-binding protein AprD
512	 33.04	0	548067..549083	-	338	67458904	asd	RF_0512	-	aspartate-semialdehyde dehydrogenase
513	 28.89	0	549080..549439	-	119	67458905	pkcI	RF_0513	-	protein kinase C inhibitor 1
514	 28.25	0	549574..549927	-	117	67458906	-	RF_0514	-	hypothetical protein
515	 35.15	0	550319..550867	+	182	67458907	hslV	RF_0515	-	ATP-dependent protease peptidase subunit
516	 35.03	0	550864..552216	+	450	67458908	hslU	RF_0516	-	ATP-dependent protease ATP-binding subunit
517	 33.33	0	552379..552519	+	46	67458909	-	RF_0517	-	hypothetical protein
518	 35.73	0	552665..553915	+	416	67458910	-	RF_0518	-	Mg chelatase-related protein
519	 32.14	0	554105..555277	+	390	67458911	lpxB	RF_0519	-	lipid-A-disaccharide synthase
520	 25.67	-1	555246..555545	-	99	67458912	-	RF_0520	-	hypothetical protein
521	 30.69	0	555904..556923	+	339	67458913	-	RF_0521	-	hypothetical protein
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.