IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
359	 28.60	0	376272..377855	+	527	67458751	-	RF_0359	-	site-specific recombinase
360	 34.55	0	377964..379613	-	549	67458752	pat1	RF_0360	-	patatin-like phospholipase
361	 28.97	0	379803..380123	+	106	67458753	-	RF_0361	-	hypothetical protein
362	 26.12	-1	380508..381962	+	484	67458754	-	RF_0362	-	hypothetical protein
363	 31.17	0	381949..382596	-	215	67458755	-	RF_0363	-	hypothetical protein
364	 33.84	0	382683..384074	-	463	67458756	dnaA	RF_0364	-	chromosomal replication initiation protein
365	 28.49	0	384075..384446	-	123	67458757	pspE	RF_0365	-	rhodanese-related sulfurtransferase
366	 27.27	-1	384688..384951	+	87	67458758	-	RF_0366	-	hypothetical protein
367	 32.49	0	384963..388391	+	1142	67458759	mfd	RF_0367	-	transcription-repair coupling factor
368	 33.40	0	388467..390059	+	530	67458760	murE	RF_0368	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
369	 31.11	0	390179..391528	+	449	67458761	murF	RF_0369	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
370	 33.98	0	391722..392807	+	361	67458762	mraY	RF_0370	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
371	 31.38	0	393024..394613	+	529	67458763	rickA	RF_0371	-	Actin polymerization protein RickA
372	 38.41	+1	394865..395455	-	196	67458764	-	RF_0372	-	tryptophan repressor binding protein
373	 36.48	+1	395612..396247	-	211	67458765	scoB	RF_0373	-	succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
374	 35.62	0	396251..396949	-	232	67458766	scoA	RF_0374	-	succinyl-CoA:3-ketoacid-coenzyme A transferase
375	 28.00	-1	397107..397949	+	280	67458767	-	RF_0375	-	hypothetical protein
376	 38.10	+1	398123..398311	+	62	67458768	-	RF_0376	-	hypothetical protein
377	 29.89	0	398471..399109	-	212	67458769	-	RF_0377	-	hypothetical protein
378	 37.38	+1	399211..401334	+	707	67458770	recG	RF_0378	-	ATP-dependent DNA helicase RecG
379	 35.46	0	402914..403759	+	281	67458771	-	RF_0379	-	transposase
380	 29.17	0	403887..404390	+	167	67458772	spoT6	RF_0380	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
381	 29.86	0	404476..408015	+	1179	67458773	spoT13	RF_0381	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
382	 28.96	0	408615..408980	+	121	67458774	-	RF_0382	-	transposase
383	 30.34	0	409021..409488	+	155	67458775	-	RF_0383	-	transposase
384	 28.53	0	409542..410249	+	235	67458776	spoT15	RF_0384	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
385	 28.44	0	410278..410706	-	142	67458777	-	RF_0385	-	hypothetical protein
386	 30.00	0	410918..411367	-	149	67458778	-	RF_0386	-	hypothetical protein
387	 32.07	0	412009..412245	-	78	67458779	-	RF_0387	-	transposase
388	 36.83	+1	412324..413124	-	266	67458780	-	RF_0388	-	transposase/IS protein
389	 36.71	+1	413121..413564	-	147	67458781	-	RF_0389	-	transposase
390	 35.78	0	413539..414150	-	203	67458782	-	RF_0390	-	transposase
391	 29.15	0	414568..415761	-	397	67458783	proP	RF_0391	-	major facilitator superfamily permease
392	 33.65	0	415778..416731	+	317	67458784	-	RF_0392	-	transposase
393	 30.45	0	416806..417048	+	80	67458785	-	RF_0393	-	transposase
394	 31.88	0	417071..417208	-	45	67458786	-	RF_0394	-	major facilitator transporter
395	 28.36	0	417504..418850	-	448	67458787	-	RF_0395	-	hypothetical protein
396	 25.64	-1	419230..419463	+	77	67458788	-	RF_0396	-	hypothetical protein
397	 30.57	0	419509..420339	-	276	67458789	-	RF_0397	-	MFS type sugar transporter
398	 44.12	+2	420329..420532	-	67	67458790	-	RF_0398	-	MFS type sugar transporter
399	 32.08	0	420584..420823	-	79	67458791	-	RF_0399	-	MFS type sugar transporter
400	 23.32	-2	420889..421557	-	222	67458792	-	RF_0400	-	hypothetical protein
401	 26.70	-1	421791..422846	-	351	67458793	perM	RF_0401	-	permease PerM-like protein
402	 32.22	0	422858..423397	-	179	67458794	grpE	RF_0402	-	GrpE protein
403	 40.56	+2	423624..424343	+	239	67458795	rph	RF_0403	-	ribonuclease PH
404	 27.17	-1	424532..424807	-	91	67458796	-	RF_0404	-	hypothetical protein
405	 32.04	0	424949..425257	+	102	67458797	-	RF_0405	-	hypothetical protein
406	 26.82	-1	425322..425858	+	178	67458798	-	RF_0406	-	hypothetical protein
407	 28.17	0	425843..427777	+	644	67458799	-	RF_0407	-	glycosyltransferase
408	 34.03	0	427906..428193	+	95	162022124	groES	RF_0408	-	co-chaperonin GroES
409	 38.75	+1	428223..429866	+	547	67458801	groEL	RF_0409	-	chaperonin GroEL
410	 27.41	-1	431261..431665	+	134	67458802	spoT12	RF_0410	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
411	 36.95	+1	431595..432923	+	442	67458803	-	RF_0411	-	chitinase
412	 32.22	0	433091..433627	-	178	67458804	-	RF_0412	-	hypothetical protein
413	 35.78	0	433624..435015	-	463	67458805	gltX	RF_0413	-	glutamyl-tRNA synthetase
414	 33.88	0	435355..436089	-	244	67458806	ubiG	RF_0414	-	3-demethylubiquinone-9 3-methyltransferase
415	 28.87	0	436227..436988	+	253	67458807	znuB	RF_0415	-	Zinc/manganese ABC transporter permease protein
416	 30.36	0	436985..437320	+	111	67458808	-	RF_0416	-	hypothetical protein
417	 31.67	0	437462..440884	-	1140	67458809	aas	RF_0417	-	acylglycerophosphoethanolamine acyltransferase
418	 39.94	+2	441542..443086	+	514	67458810	pccB	RF_0418	-	propionyl-CoA carboxylase beta chain precursor
419	 37.29	+1	443217..445214	+	665	67458811	accC	RF_0419	-	Acetyl-CoA carboxylase, biotin carboxylase
420	 34.92	0	445328..445453	-	41	67458812	-	RF_0420	-	hypothetical protein
421	 27.08	-1	445577..446104	-	175	67458813	-	RF_0421	-	hypothetical protein
422	 28.33	0	446652..447890	-	412	67458814	-	RF_0422	-	hypothetical protein
423	 37.93	+1	447974..451258	-	1094	67458815	ileS	RF_0423	-	isoleucyl-tRNA synthetase
424	 26.01	-1	451474..451746	+	90	67458816	-	RF_0424	-	excinuclease ABC subunit C
425	 31.11	0	452057..452686	-	209	67458817	-	RF_0425	-	hypothetical protein
426	 35.82	0	452748..452948	+	66	67458818	rpsU	RF_0426	-	30S ribosomal protein S21
427	 31.33	0	453241..455040	+	599	67458819	ntrY	RF_0427	-	nitrogen regulation protein NtrY
428	 31.96	0	455163..456038	+	291	67458820	-	RF_0428	-	acetyltransferase
429	 32.37	0	458171..458587	+	138	67458821	-	RF_0429	-	putative lipoprotein
430	 27.48	-1	458899..459291	+	130	67458822	-	RF_0430	-	hypothetical protein
431	 29.50	0	459340..459939	+	199	67458823	-	RF_0431	-	hypothetical protein
432	 24.67	-1	460218..460367	+	49	67458824	-	RF_0432	-	hypothetical protein
433	 26.98	-1	460940..461899	+	319	67458825	corA	RF_0433	-	magnesium/cobalt transporter CorA
434	 28.49	0	462082..462639	+	185	67458826	-	RF_0434	-	hypothetical protein
435	 35.95	+1	462691..463302	+	203	67458827	-	RF_0435	-	transposase
436	 36.71	+1	463277..463720	+	147	67458828	-	RF_0436	-	transposase
437	 36.83	+1	463717..464517	+	266	67458829	-	RF_0437	-	transposase/IS protein
438	 33.74	0	465405..466136	+	243	67458830	spoT7	RF_0438	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
439	 31.27	0	466054..467361	-	435	67458831	-	RF_0439	-	MFS type sugar transporter
440	 28.31	0	467626..468342	+	238	67458832	spoT8	RF_0440	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
441	 30.89	0	468284..469591	-	435	67458833	-	RF_0441	-	MFS type sugar transporter
442	 32.30	0	470276..470950	-	224	67458834	-	RF_0442	-	hypothetical protein
443	 36.83	+1	471342..472313	-	323	67458835	-	RF_0443	-	hypothetical protein
444	 26.86	-1	472670..473719	-	349	67458836	-	RF_0444	-	TPR repeat-containing protein
445	 36.98	+1	474106..474516	+	136	67458837	-	RF_0445	-	hypothetical protein
446	 31.68	0	474604..475086	+	160	67458838	-	RF_0446	-	hypothetical protein
447	 29.90	0	475188..477050	+	620	67458839	-	RF_0447	-	NACHT domain-containing protein
448	 30.87	0	477280..478701	+	473	67458840	-	RF_0448	-	hypothetical protein
449	 27.33	-1	478898..479896	+	332	67458841	-	RF_0449	-	hypothetical protein
450	 31.34	0	480073..480774	+	233	67458842	spoT1	RF_0450	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
451	 27.08	-1	480716..481147	-	143	67458843	-	RF_0451	-	MFS type sugar transporter
452	 33.61	0	481300..482022	-	240	67458844	-	RF_0452	-	MFS type sugar transporter
453	 34.44	0	482156..483328	-	390	67458845	rodA	RF_0453	-	rod shape-determining protein RodA
454	 31.94	0	483444..485522	-	692	67458846	ptrB	RF_0454	-	protease II
455	 30.07	0	485589..487121	-	510	67458847	nuoL3	RF_0455	-	putative monovalent cation/H+ antiporter subunit D
456	 29.38	0	487123..487527	-	134	67458848	vapC1	RF_0456	-	toxin of toxin-antitoxin system VapC
457	 34.62	0	487518..487829	-	103	67458849	vapB1	RF_0457	-	antitoxin of toxin-antitoxin system VapB
458	 30.46	0	487874..489337	-	487	67458850	nuoL2	RF_0458	-	putative monovalent cation/H+ antiporter subunit D
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.