IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
326	 34.51	0	346352..346606	+	84	67458718	-	RF_0326	-	hypothetical protein
327	 34.67	0	346617..346991	+	124	67458719	-	RF_0327	-	hypothetical protein
328	 27.92	-1	347355..348407	-	350	67458720	n2B	RF_0328	-	putative ATPase n2B
329	 28.23	0	348404..349108	-	234	67458721	-	RF_0329	-	nucleotidyltransferase domain-containing protein
330	 35.33	0	349105..350208	-	367	67458722	queA	RF_0330	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
331	 32.20	0	350581..352350	-	589	67458723	abcT3	RF_0331	-	multidrug ABC transporter ATP-binding protein
332	 28.94	0	352534..352806	+	90	67458724	-	RF_0332	-	hypothetical protein
333	 34.35	0	353016..354386	+	456	67458725	cydA	RF_0333	-	cytochrome d ubiquinol oxidase subunit I
334	 27.41	-1	354395..354664	-	89	67458726	-	RF_0334	-	hypothetical protein
335	 34.87	0	354668..354928	-	86	67458727	relB1	RF_0335	-	DNA-damage-inducible protein J
336	 36.37	+1	355088..356107	+	339	67458728	cydB	RF_0336	-	cytochrome d ubiquinol oxidase subunit II
337	 33.57	0	356452..357303	+	283	67458729	lgtF	RF_0337	-	Beta 1,4 glucosyltransferase
338	 33.82	0	357382..358620	+	412	67458730	mpp	RF_0338	-	Zn-dependent peptidase
339	 32.35	0	358801..359511	+	236	67458731	purC	RF_0339	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
340	 26.78	-1	359753..361354	+	533	67458732	-	RF_0340	-	hypothetical protein
341	 27.16	-1	361731..362054	-	107	67458733	-	RF_0341	-	integrase-like protein
342	 35.78	0	362753..363364	+	203	67458734	-	RF_0342	-	transposase
343	 36.71	+1	363339..363782	+	147	67458735	-	RF_0343	-	transposase
344	 36.83	+1	363779..364579	+	266	67458736	-	RF_0344	-	transposase/IS protein
345	 26.31	-1	364624..365790	+	388	67458737	-	RF_0345	-	hypothetical protein
346	 29.97	0	365976..367403	+	475	67458738	-	RF_0346	-	hypothetical protein
347	 25.77	-1	367899..368255	-	118	67458739	rnpA	RF_0347	-	ribonuclease P
348	 34.81	0	368275..368409	-	44	67458740	rpmH	RF_0348	-	50S ribosomal protein L34
349	 35.88	+1	368562..368915	-	117	67458741	rplT	RF_0349	-	50S ribosomal protein L20
350	 33.82	0	368936..369142	-	68	67458742	rpmI	RF_0350	-	50S ribosomal protein L35
351	 33.33	0	369344..370021	+	225	67458743	nrdG	RF_0351	-	organic radical activating protein
352	 36.27	+1	370434..371045	+	203	67458744	rplY	RF_0352	-	50S ribosomal protein L25/general stress protein Ctc
353	 30.82	0	371329..371886	+	185	67458745	pth	RF_0353	-	peptidyl-tRNA hydrolase
354	 30.77	0	372019..372447	+	142	67458746	-	RF_0354	-	acetyltransferase
355	 36.70	+1	372444..373541	+	365	67458747	ychF	RF_0355	-	translation-associated GTPase
356	 30.98	0	373713..373967	+	84	67458748	-	RF_0356	-	hypothetical protein
357	 29.53	0	374148..374489	+	113	67458749	-	RF_0357	-	hypothetical protein
358	 33.33	0	374871..376088	+	405	67458750	bcr1	RF_0358	-	bicyclomycin resistance protein
359	 28.60	0	376272..377855	+	527	67458751	-	RF_0359	-	site-specific recombinase
360	 34.55	0	377964..379613	-	549	67458752	pat1	RF_0360	-	patatin-like phospholipase
361	 28.97	0	379803..380123	+	106	67458753	-	RF_0361	-	hypothetical protein
362	 26.12	-1	380508..381962	+	484	67458754	-	RF_0362	-	hypothetical protein
363	 31.17	0	381949..382596	-	215	67458755	-	RF_0363	-	hypothetical protein
364	 33.84	0	382683..384074	-	463	67458756	dnaA	RF_0364	-	chromosomal replication initiation protein
365	 28.49	0	384075..384446	-	123	67458757	pspE	RF_0365	-	rhodanese-related sulfurtransferase
366	 27.27	-1	384688..384951	+	87	67458758	-	RF_0366	-	hypothetical protein
367	 32.49	0	384963..388391	+	1142	67458759	mfd	RF_0367	-	transcription-repair coupling factor
368	 33.40	0	388467..390059	+	530	67458760	murE	RF_0368	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
369	 31.11	0	390179..391528	+	449	67458761	murF	RF_0369	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
370	 33.98	0	391722..392807	+	361	67458762	mraY	RF_0370	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
371	 31.38	0	393024..394613	+	529	67458763	rickA	RF_0371	-	Actin polymerization protein RickA
372	 38.41	+1	394865..395455	-	196	67458764	-	RF_0372	-	tryptophan repressor binding protein
373	 36.48	+1	395612..396247	-	211	67458765	scoB	RF_0373	-	succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
374	 35.62	0	396251..396949	-	232	67458766	scoA	RF_0374	-	succinyl-CoA:3-ketoacid-coenzyme A transferase
375	 28.00	-1	397107..397949	+	280	67458767	-	RF_0375	-	hypothetical protein
376	 38.10	+1	398123..398311	+	62	67458768	-	RF_0376	-	hypothetical protein
377	 29.89	0	398471..399109	-	212	67458769	-	RF_0377	-	hypothetical protein
378	 37.38	+1	399211..401334	+	707	67458770	recG	RF_0378	-	ATP-dependent DNA helicase RecG
379	 35.46	0	402914..403759	+	281	67458771	-	RF_0379	-	transposase
380	 29.17	0	403887..404390	+	167	67458772	spoT6	RF_0380	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
381	 29.86	0	404476..408015	+	1179	67458773	spoT13	RF_0381	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
382	 28.96	0	408615..408980	+	121	67458774	-	RF_0382	-	transposase
383	 30.34	0	409021..409488	+	155	67458775	-	RF_0383	-	transposase
384	 28.53	0	409542..410249	+	235	67458776	spoT15	RF_0384	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
385	 28.44	0	410278..410706	-	142	67458777	-	RF_0385	-	hypothetical protein
386	 30.00	0	410918..411367	-	149	67458778	-	RF_0386	-	hypothetical protein
387	 32.07	0	412009..412245	-	78	67458779	-	RF_0387	-	transposase
388	 36.83	+1	412324..413124	-	266	67458780	-	RF_0388	-	transposase/IS protein
389	 36.71	+1	413121..413564	-	147	67458781	-	RF_0389	-	transposase
390	 35.78	0	413539..414150	-	203	67458782	-	RF_0390	-	transposase
391	 29.15	0	414568..415761	-	397	67458783	proP	RF_0391	-	major facilitator superfamily permease
392	 33.65	0	415778..416731	+	317	67458784	-	RF_0392	-	transposase
393	 30.45	0	416806..417048	+	80	67458785	-	RF_0393	-	transposase
394	 31.88	0	417071..417208	-	45	67458786	-	RF_0394	-	major facilitator transporter
395	 28.36	0	417504..418850	-	448	67458787	-	RF_0395	-	hypothetical protein
396	 25.64	-1	419230..419463	+	77	67458788	-	RF_0396	-	hypothetical protein
397	 30.57	0	419509..420339	-	276	67458789	-	RF_0397	-	MFS type sugar transporter
398	 44.12	+2	420329..420532	-	67	67458790	-	RF_0398	-	MFS type sugar transporter
399	 32.08	0	420584..420823	-	79	67458791	-	RF_0399	-	MFS type sugar transporter
400	 23.32	-2	420889..421557	-	222	67458792	-	RF_0400	-	hypothetical protein
401	 26.70	-1	421791..422846	-	351	67458793	perM	RF_0401	-	permease PerM-like protein
402	 32.22	0	422858..423397	-	179	67458794	grpE	RF_0402	-	GrpE protein
403	 40.56	+2	423624..424343	+	239	67458795	rph	RF_0403	-	ribonuclease PH
404	 27.17	-1	424532..424807	-	91	67458796	-	RF_0404	-	hypothetical protein
405	 32.04	0	424949..425257	+	102	67458797	-	RF_0405	-	hypothetical protein
406	 26.82	-1	425322..425858	+	178	67458798	-	RF_0406	-	hypothetical protein
407	 28.17	0	425843..427777	+	644	67458799	-	RF_0407	-	glycosyltransferase
408	 34.03	0	427906..428193	+	95	162022124	groES	RF_0408	-	co-chaperonin GroES
409	 38.75	+1	428223..429866	+	547	67458801	groEL	RF_0409	-	chaperonin GroEL
410	 27.41	-1	431261..431665	+	134	67458802	spoT12	RF_0410	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
411	 36.95	+1	431595..432923	+	442	67458803	-	RF_0411	-	chitinase
412	 32.22	0	433091..433627	-	178	67458804	-	RF_0412	-	hypothetical protein
413	 35.78	0	433624..435015	-	463	67458805	gltX	RF_0413	-	glutamyl-tRNA synthetase
414	 33.88	0	435355..436089	-	244	67458806	ubiG	RF_0414	-	3-demethylubiquinone-9 3-methyltransferase
415	 28.87	0	436227..436988	+	253	67458807	znuB	RF_0415	-	Zinc/manganese ABC transporter permease protein
416	 30.36	0	436985..437320	+	111	67458808	-	RF_0416	-	hypothetical protein
417	 31.67	0	437462..440884	-	1140	67458809	aas	RF_0417	-	acylglycerophosphoethanolamine acyltransferase
418	 39.94	+2	441542..443086	+	514	67458810	pccB	RF_0418	-	propionyl-CoA carboxylase beta chain precursor
419	 37.29	+1	443217..445214	+	665	67458811	accC	RF_0419	-	Acetyl-CoA carboxylase, biotin carboxylase
420	 34.92	0	445328..445453	-	41	67458812	-	RF_0420	-	hypothetical protein
421	 27.08	-1	445577..446104	-	175	67458813	-	RF_0421	-	hypothetical protein
422	 28.33	0	446652..447890	-	412	67458814	-	RF_0422	-	hypothetical protein
423	 37.93	+1	447974..451258	-	1094	67458815	ileS	RF_0423	-	isoleucyl-tRNA synthetase
424	 26.01	-1	451474..451746	+	90	67458816	-	RF_0424	-	excinuclease ABC subunit C
425	 31.11	0	452057..452686	-	209	67458817	-	RF_0425	-	hypothetical protein
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.