IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
296	 25.78	-1	314223..314447	+	74	67458688	rpmD	RF_0296	-	50S ribosomal protein L30
297	 29.65	0	314461..314922	+	153	67458689	rplO	RF_0297	-	50S ribosomal protein L15
298	 31.41	0	314926..316227	+	433	67458690	secY	RF_0298	-	preprotein translocase subunit SecY
299	 25.20	-1	316243..316881	+	212	67458691	adk	RF_0299	-	adenylate kinase
300	 34.39	0	316940..317317	+	125	67458692	rpsM	RF_0300	-	30S ribosomal protein S13
301	 36.72	+1	317342..317725	+	127	67458693	rpsK	RF_0301	-	30S ribosomal protein S11
302	 31.87	0	317744..318766	+	340	67458694	rpoA	RF_0302	-	DNA-directed RNA polymerase subunit alpha
303	 30.71	0	318779..319159	+	126	67458695	rplQ	RF_0303	-	50S ribosomal protein L17
304	 28.21	0	319208..319480	+	90	67458696	rpsT	RF_0304	-	30S ribosomal protein S20
305	 34.52	0	320871..321293	+	140	67458697	spoT5	RF_0305	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
306	 36.83	+1	321311..322111	-	266	67458698	-	RF_0306	-	transposase/IS protein
307	 36.71	+1	322108..322551	-	147	67458699	-	RF_0307	-	transposase
308	 35.78	0	322526..323137	-	203	67458700	-	RF_0308	-	transposase
309	 28.33	0	323763..325040	+	425	67458701	-	RF_0309	-	MFS type sugar transporter
310	 28.34	0	325405..327525	-	706	67458702	-	RF_0310	-	TPR repeat-containing protein
311	 32.95	0	327859..328122	+	87	67458703	-	RF_0311	-	hypothetical protein
312	 28.42	0	328129..328413	+	94	67458704	-	RF_0312	-	hypothetical protein
313	 35.48	0	328455..328733	-	92	67458705	-	RF_0313	-	hypothetical protein
314	 26.17	-1	329513..330196	-	227	67458706	-	RF_0314	-	ankyrin repeat-containing protein
315	 32.55	0	330585..330965	+	126	67458707	-	RF_0315	-	hypothetical protein
316	 28.68	0	331551..331808	+	85	67458708	-	RF_0316	-	hypothetical protein
317	 37.63	+1	333059..333709	+	216	67458709	-	RF_0317	-	hypothetical protein
318	 32.96	0	333654..334712	+	352	67458710	-	RF_0318	-	hypothetical protein
319	 31.14	0	335000..336001	+	333	67458711	sca11	RF_0319	-	cell surface antigen-like protein Sca11
320	 33.54	0	336125..337078	+	317	67458712	-	RF_0320	-	transposase
321	 30.45	0	337153..337395	+	80	67458713	-	RF_0321	-	transposase
322	 28.89	0	337867..339015	+	382	67458714	-	RF_0322	-	transporter
323	 26.88	-1	339315..339500	+	61	67458715	-	RF_0323	-	hypothetical protein
324	 36.36	+1	339942..340469	+	175	67458716	def	RF_0324	-	peptide deformylase
325	 33.88	0	340466..341377	+	303	67458717	fmt	RF_0325	-	methionyl-tRNA formyltransferase
326	 34.51	0	346352..346606	+	84	67458718	-	RF_0326	-	hypothetical protein
327	 34.67	0	346617..346991	+	124	67458719	-	RF_0327	-	hypothetical protein
328	 27.92	-1	347355..348407	-	350	67458720	n2B	RF_0328	-	putative ATPase n2B
329	 28.23	0	348404..349108	-	234	67458721	-	RF_0329	-	nucleotidyltransferase domain-containing protein
330	 35.33	0	349105..350208	-	367	67458722	queA	RF_0330	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
331	 32.20	0	350581..352350	-	589	67458723	abcT3	RF_0331	-	multidrug ABC transporter ATP-binding protein
332	 28.94	0	352534..352806	+	90	67458724	-	RF_0332	-	hypothetical protein
333	 34.35	0	353016..354386	+	456	67458725	cydA	RF_0333	-	cytochrome d ubiquinol oxidase subunit I
334	 27.41	-1	354395..354664	-	89	67458726	-	RF_0334	-	hypothetical protein
335	 34.87	0	354668..354928	-	86	67458727	relB1	RF_0335	-	DNA-damage-inducible protein J
336	 36.37	+1	355088..356107	+	339	67458728	cydB	RF_0336	-	cytochrome d ubiquinol oxidase subunit II
337	 33.57	0	356452..357303	+	283	67458729	lgtF	RF_0337	-	Beta 1,4 glucosyltransferase
338	 33.82	0	357382..358620	+	412	67458730	mpp	RF_0338	-	Zn-dependent peptidase
339	 32.35	0	358801..359511	+	236	67458731	purC	RF_0339	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
340	 26.78	-1	359753..361354	+	533	67458732	-	RF_0340	-	hypothetical protein
341	 27.16	-1	361731..362054	-	107	67458733	-	RF_0341	-	integrase-like protein
342	 35.78	0	362753..363364	+	203	67458734	-	RF_0342	-	transposase
343	 36.71	+1	363339..363782	+	147	67458735	-	RF_0343	-	transposase
344	 36.83	+1	363779..364579	+	266	67458736	-	RF_0344	-	transposase/IS protein
345	 26.31	-1	364624..365790	+	388	67458737	-	RF_0345	-	hypothetical protein
346	 29.97	0	365976..367403	+	475	67458738	-	RF_0346	-	hypothetical protein
347	 25.77	-1	367899..368255	-	118	67458739	rnpA	RF_0347	-	ribonuclease P
348	 34.81	0	368275..368409	-	44	67458740	rpmH	RF_0348	-	50S ribosomal protein L34
349	 35.88	+1	368562..368915	-	117	67458741	rplT	RF_0349	-	50S ribosomal protein L20
350	 33.82	0	368936..369142	-	68	67458742	rpmI	RF_0350	-	50S ribosomal protein L35
351	 33.33	0	369344..370021	+	225	67458743	nrdG	RF_0351	-	organic radical activating protein
352	 36.27	+1	370434..371045	+	203	67458744	rplY	RF_0352	-	50S ribosomal protein L25/general stress protein Ctc
353	 30.82	0	371329..371886	+	185	67458745	pth	RF_0353	-	peptidyl-tRNA hydrolase
354	 30.77	0	372019..372447	+	142	67458746	-	RF_0354	-	acetyltransferase
355	 36.70	+1	372444..373541	+	365	67458747	ychF	RF_0355	-	translation-associated GTPase
356	 30.98	0	373713..373967	+	84	67458748	-	RF_0356	-	hypothetical protein
357	 29.53	0	374148..374489	+	113	67458749	-	RF_0357	-	hypothetical protein
358	 33.33	0	374871..376088	+	405	67458750	bcr1	RF_0358	-	bicyclomycin resistance protein
359	 28.60	0	376272..377855	+	527	67458751	-	RF_0359	-	site-specific recombinase
360	 34.55	0	377964..379613	-	549	67458752	pat1	RF_0360	-	patatin-like phospholipase
361	 28.97	0	379803..380123	+	106	67458753	-	RF_0361	-	hypothetical protein
362	 26.12	-1	380508..381962	+	484	67458754	-	RF_0362	-	hypothetical protein
363	 31.17	0	381949..382596	-	215	67458755	-	RF_0363	-	hypothetical protein
364	 33.84	0	382683..384074	-	463	67458756	dnaA	RF_0364	-	chromosomal replication initiation protein
365	 28.49	0	384075..384446	-	123	67458757	pspE	RF_0365	-	rhodanese-related sulfurtransferase
366	 27.27	-1	384688..384951	+	87	67458758	-	RF_0366	-	hypothetical protein
367	 32.49	0	384963..388391	+	1142	67458759	mfd	RF_0367	-	transcription-repair coupling factor
368	 33.40	0	388467..390059	+	530	67458760	murE	RF_0368	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
369	 31.11	0	390179..391528	+	449	67458761	murF	RF_0369	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
370	 33.98	0	391722..392807	+	361	67458762	mraY	RF_0370	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
371	 31.38	0	393024..394613	+	529	67458763	rickA	RF_0371	-	Actin polymerization protein RickA
372	 38.41	+1	394865..395455	-	196	67458764	-	RF_0372	-	tryptophan repressor binding protein
373	 36.48	+1	395612..396247	-	211	67458765	scoB	RF_0373	-	succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
374	 35.62	0	396251..396949	-	232	67458766	scoA	RF_0374	-	succinyl-CoA:3-ketoacid-coenzyme A transferase
375	 28.00	-1	397107..397949	+	280	67458767	-	RF_0375	-	hypothetical protein
376	 38.10	+1	398123..398311	+	62	67458768	-	RF_0376	-	hypothetical protein
377	 29.89	0	398471..399109	-	212	67458769	-	RF_0377	-	hypothetical protein
378	 37.38	+1	399211..401334	+	707	67458770	recG	RF_0378	-	ATP-dependent DNA helicase RecG
379	 35.46	0	402914..403759	+	281	67458771	-	RF_0379	-	transposase
380	 29.17	0	403887..404390	+	167	67458772	spoT6	RF_0380	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
381	 29.86	0	404476..408015	+	1179	67458773	spoT13	RF_0381	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
382	 28.96	0	408615..408980	+	121	67458774	-	RF_0382	-	transposase
383	 30.34	0	409021..409488	+	155	67458775	-	RF_0383	-	transposase
384	 28.53	0	409542..410249	+	235	67458776	spoT15	RF_0384	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
385	 28.44	0	410278..410706	-	142	67458777	-	RF_0385	-	hypothetical protein
386	 30.00	0	410918..411367	-	149	67458778	-	RF_0386	-	hypothetical protein
387	 32.07	0	412009..412245	-	78	67458779	-	RF_0387	-	transposase
388	 36.83	+1	412324..413124	-	266	67458780	-	RF_0388	-	transposase/IS protein
389	 36.71	+1	413121..413564	-	147	67458781	-	RF_0389	-	transposase
390	 35.78	0	413539..414150	-	203	67458782	-	RF_0390	-	transposase
391	 29.15	0	414568..415761	-	397	67458783	proP	RF_0391	-	major facilitator superfamily permease
392	 33.65	0	415778..416731	+	317	67458784	-	RF_0392	-	transposase
393	 30.45	0	416806..417048	+	80	67458785	-	RF_0393	-	transposase
394	 31.88	0	417071..417208	-	45	67458786	-	RF_0394	-	major facilitator transporter
395	 28.36	0	417504..418850	-	448	67458787	-	RF_0395	-	hypothetical protein
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.