IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
218	 29.71	0	241029..241580	+	183	67458610	rimJ	RF_0218	-	ribosomal-protein-alanine acetyltransferase
219	 35.45	0	241731..243008	+	425	67458611	clpX	RF_0219	-	ATP-dependent protease ATP-binding subunit
220	 32.90	0	243353..243817	-	154	67458612	-	RF_0220	-	hypothetical protein
221	 29.78	0	243817..245112	-	431	67458613	-	RF_0221	-	putative oxidoreductase protein
222	 29.39	0	245558..247486	+	642	67458614	-	RF_0222	-	hypothetical protein
223	 30.41	0	247570..248766	+	398	67458615	-	RF_0223	-	hypothetical protein
224	 30.05	0	248777..249691	+	304	67458616	-	RF_0224	-	hypothetical protein
225	 34.27	0	249707..250993	-	428	67458617	-	RF_0225	-	hypothetical protein
226	 31.01	0	251243..252448	+	401	67458618	-	RF_0226	-	ATPase
227	 29.78	0	252508..253239	-	243	67458619	-	RF_0227	-	hypothetical protein
228	 31.37	0	253385..254149	-	254	67458620	-	RF_0228	-	hypothetical protein
229	 35.93	+1	254106..256685	-	859	67458621	valS	RF_0229	-	valyl-tRNA synthetase
230	 30.15	0	256803..257744	-	313	67458622	-	RF_0230	-	transposase
231	 32.38	0	257835..258677	+	280	67458623	ubiA	RF_0231	-	prenyltransferase
232	 29.87	0	258743..259204	+	153	67458624	-	RF_0232	-	hypothetical protein
233	 36.06	+1	259201..260595	-	464	67458625	proP4	RF_0233	-	proline/betaine transporter
234	 35.27	0	260929..261549	+	206	67458626	tdk	RF_0234	-	thymidylate kinase
235	 36.45	+1	261691..263229	+	512	67458627	metG	RF_0235	-	methionyl-tRNA synthetase
236	 34.94	0	263371..264243	+	290	67458628	tatD	RF_0236	-	putative deoxyribonuclease, hydrolase
237	 29.46	0	264478..265485	+	335	67458629	-	RF_0237	-	hypothetical protein
238	 33.57	0	265649..266926	+	425	67458630	-	RF_0238	-	Poly-beta-hydroxyalkanoate depolymerase
239	 26.05	-1	267222..267482	-	86	67458631	-	RF_0239	-	hypothetical protein
240	 26.04	-1	267971..268354	-	127	67458632	-	RF_0240	-	hypothetical protein
241	 30.15	0	268356..269393	-	345	67458633	manC	RF_0241	-	mannose-1-phosphate guanylyltransferase
242	 30.57	0	269457..270287	-	276	67458634	mutM	RF_0242	-	formamidopyrimidine-DNA glycosidase
243	 31.19	0	270316..271062	+	248	67458635	ubiE	RF_0243	-	ubiquinone/menaquinone biosynthesis methyltransferase
244	 36.53	+1	271059..272495	+	478	67458636	ubiB	RF_0244	-	2-polyprenylphenol 6-hydroxylase
245	 36.24	+1	272876..273322	+	148	67458637	-	RF_0245	-	hypothetical protein
246	 30.92	0	273434..275215	+	593	67458638	-	RF_0246	-	hypothetical protein
247	 32.98	0	275336..276478	+	380	67458639	-	RF_0247	-	ATPase
248	 33.85	0	276622..277965	-	447	67458640	engA	RF_0248	-	GTP-binding protein EngA
249	 35.75	0	277968..278381	-	137	67458641	-	RF_0249	-	hypothetical protein
250	 29.50	0	278385..279167	-	260	67458642	xth2	RF_0250	-	exodeoxyribonuclease III
251	 28.72	0	279164..280246	-	360	67458643	-	RF_0251	-	hypothetical protein
252	 31.26	0	280301..280735	-	144	67458644	-	RF_0252	-	hypothetical protein
253	 31.82	0	280857..282245	-	462	67458645	xseA	RF_0253	-	exodeoxyribonuclease VII large subunit
254	 31.37	0	282464..284605	+	713	67458646	ostA	RF_0254	-	organic solvent tolerance protein
255	 29.74	0	284807..285697	+	296	67458647	-	RF_0255	-	hypothetical protein
256	 33.74	0	285842..286573	+	243	67458648	ksgA	RF_0256	-	dimethyladenosine transferase
257	 24.28	-2	286922..287164	-	80	67458649	-	RF_0257	-	hypothetical protein
258	 24.67	-1	287526..288056	-	176	67458650	-	RF_0258	-	hypothetical protein
259	 34.65	0	288352..289113	+	253	67458651	-	RF_0259	-	protein phosphatase
260	 25.23	-1	289490..290131	-	213	67458652	-	RF_0260	-	TPR repeat-containing protein
261	 27.13	-1	291012..291140	-	42	67458653	-	RF_0261	-	hypothetical protein
262	 34.74	0	291256..291468	+	70	67458654	cspA	RF_0262	-	cold shock-like protein
263	 33.76	0	292119..292355	+	78	67458655	-	RF_0263	-	ATP-dependent RNA helicase RhlE
264	 33.62	0	292303..293364	+	353	67458656	-	RF_0264	-	ATP-dependent RNA helicase RhlE
265	 30.42	0	293766..294725	+	319	67458657	ampG2	RF_0265	-	AmpG protein
266	 28.75	0	294891..296111	-	406	67458658	-	RF_0266	-	ankyrin repeat-containing protein
267	 35.95	+1	296481..297053	+	190	67458659	-	RF_0267	-	NifU-like domain-containing protein
268	 32.11	0	297194..297682	-	162	67458660	ecoT	RF_0268	-	ecotin precursor
269	 24.67	-1	297700..298611	-	303	67458661	-	RF_0269	-	hypothetical protein
270	 37.75	+1	298620..299978	-	452	67458662	ftsZ	RF_0270	-	cell division protein FtsZ
271	 29.11	0	300217..300642	-	141	67458663	-	RF_0271	-	toxin of toxin-antitoxin system
272	 32.13	0	300639..300887	-	82	67458664	-	RF_0272	-	antitoxin of toxin-antitoxin system Phd
273	 35.64	0	300991..302376	-	461	67458665	fumC	RF_0273	-	fumarate hydratase
274	 23.84	-2	302373..302825	-	150	67458666	-	RF_0274	-	hypothetical protein
275	 29.60	0	302936..303658	-	240	67458667	-	RF_0275	-	tRNA/rRNA methyltransferase
276	 38.82	+1	304264..305448	+	394	67458668	tuf	RF_0276	-	elongation factor Tu
277	 32.08	0	305544..305861	+	105	67458669	rpsJ	RF_0277	-	30S ribosomal protein S10
278	 32.41	0	305862..306509	+	215	67458670	rplC	RF_0278	-	50S ribosomal protein L3
279	 32.69	0	306782..307405	+	207	67458671	rplD	RF_0279	-	50S ribosomal protein L4
280	 25.25	-1	307402..307698	+	98	67458672	rplW	RF_0280	-	50S ribosomal protein L23
281	 34.67	0	307699..308520	+	273	67458673	rplB	RF_0281	-	50S ribosomal protein L2
282	 32.26	0	308545..308823	+	92	67458674	rpsS	RF_0282	-	30S ribosomal protein S19
283	 29.17	0	308832..309191	+	119	67458675	rplV	RF_0283	-	50S ribosomal protein L22
284	 30.58	0	309193..309846	+	217	67458676	rpsC	RF_0284	-	30S ribosomal protein S3
285	 38.69	+1	309861..310271	+	136	67458677	rplP	RF_0285	-	50S ribosomal protein L16
286	 23.61	-2	310264..310479	+	71	67458678	rpmC	RF_0286	-	50S ribosomal protein L29
287	 31.33	0	310466..310714	+	82	67458679	rpsQ	RF_0287	-	30S ribosomal protein S17
288	 37.67	+1	310789..311157	+	122	67458680	rplN	RF_0288	-	50S ribosomal protein L14
289	 30.91	0	311158..311487	+	109	67458681	rplX	RF_0289	-	50S ribosomal protein L24
290	 29.63	0	311487..312026	+	179	67458682	rplE	RF_0290	-	50S ribosomal protein L5
291	 31.37	0	312044..312349	+	101	67458683	rpsN	RF_0291	-	30S ribosomal protein S14
292	 27.32	-1	312369..312767	+	132	67458684	rpsH	RF_0292	-	30S ribosomal protein S8
293	 31.27	0	312777..313310	+	177	67458685	rplF	RF_0293	-	50S ribosomal protein L6
294	 28.29	0	313326..313682	+	118	67458686	rplR	RF_0294	-	50S ribosomal protein L18
295	 35.59	0	313700..314230	+	176	67458687	rpsE	RF_0295	-	30S ribosomal protein S5
296	 25.78	-1	314223..314447	+	74	67458688	rpmD	RF_0296	-	50S ribosomal protein L30
297	 29.65	0	314461..314922	+	153	67458689	rplO	RF_0297	-	50S ribosomal protein L15
298	 31.41	0	314926..316227	+	433	67458690	secY	RF_0298	-	preprotein translocase subunit SecY
299	 25.20	-1	316243..316881	+	212	67458691	adk	RF_0299	-	adenylate kinase
300	 34.39	0	316940..317317	+	125	67458692	rpsM	RF_0300	-	30S ribosomal protein S13
301	 36.72	+1	317342..317725	+	127	67458693	rpsK	RF_0301	-	30S ribosomal protein S11
302	 31.87	0	317744..318766	+	340	67458694	rpoA	RF_0302	-	DNA-directed RNA polymerase subunit alpha
303	 30.71	0	318779..319159	+	126	67458695	rplQ	RF_0303	-	50S ribosomal protein L17
304	 28.21	0	319208..319480	+	90	67458696	rpsT	RF_0304	-	30S ribosomal protein S20
305	 34.52	0	320871..321293	+	140	67458697	spoT5	RF_0305	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
306	 36.83	+1	321311..322111	-	266	67458698	-	RF_0306	-	transposase/IS protein
307	 36.71	+1	322108..322551	-	147	67458699	-	RF_0307	-	transposase
308	 35.78	0	322526..323137	-	203	67458700	-	RF_0308	-	transposase
309	 28.33	0	323763..325040	+	425	67458701	-	RF_0309	-	MFS type sugar transporter
310	 28.34	0	325405..327525	-	706	67458702	-	RF_0310	-	TPR repeat-containing protein
311	 32.95	0	327859..328122	+	87	67458703	-	RF_0311	-	hypothetical protein
312	 28.42	0	328129..328413	+	94	67458704	-	RF_0312	-	hypothetical protein
313	 35.48	0	328455..328733	-	92	67458705	-	RF_0313	-	hypothetical protein
314	 26.17	-1	329513..330196	-	227	67458706	-	RF_0314	-	ankyrin repeat-containing protein
315	 32.55	0	330585..330965	+	126	67458707	-	RF_0315	-	hypothetical protein
316	 28.68	0	331551..331808	+	85	67458708	-	RF_0316	-	hypothetical protein
317	 37.63	+1	333059..333709	+	216	67458709	-	RF_0317	-	hypothetical protein
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.