IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
180	 33.77	0	200109..200567	+	152	67458572	rnhA	RF_0180	-	ribonuclease H
181	 31.33	0	200555..200854	+	99	67458573	-	RF_0181	-	hypothetical protein
182	 30.89	0	200880..201329	+	149	67458574	-	RF_0182	-	ABC transporter substrate binding protein
183	 35.44	0	201491..201775	+	94	67458575	-	RF_0183	-	hypothetical protein
184	 26.71	-1	201784..202236	+	150	67458576	-	RF_0184	-	hypothetical protein
185	 25.24	-1	202588..203118	-	176	67458577	-	RF_0185	-	hypothetical protein
186	 31.43	0	203457..204767	+	436	67458578	proP10	RF_0186	-	proline/betaine transporter
187	 30.25	0	204700..205218	-	172	67458579	-	RF_0187	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein SpoT4
188	 30.99	0	205261..205431	-	56	67458580	-	RF_0188	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein SpoT4
189	 25.83	-1	205556..205795	-	79	67458581	-	RF_0189	-	hypothetical protein
190	 28.11	-1	206476..206877	+	133	67458582	-	RF_0190	-	hypothetical protein
191	 41.07	+2	206923..208008	+	361	67458583	tgt	RF_0191	-	queuine tRNA-ribosyltransferase
192	 35.12	0	208171..210291	+	706	67458584	ligA	RF_0192	-	NAD-dependent DNA ligase LigA
193	 29.93	0	210363..210773	+	136	67458585	-	RF_0193	-	hypothetical protein
194	 31.00	0	211237..212007	+	256	67458586	-	RF_0194	-	hypothetical protein
195	 30.64	0	212154..213008	+	284	67458587	-	RF_0195	-	periplasmic protein
196	 29.75	0	213170..214147	+	325	67458588	lpxK	RF_0196	-	tetraacyldisaccharide 4'-kinase
197	 33.22	0	214110..214982	+	290	67458589	htrB	RF_0197	-	lipid A biosynthesis lauroyl acyltransferase
198	 30.98	0	215125..215592	-	155	67458590	bcp	RF_0198	-	bacterioferritin comigratory protein
199	 26.32	-1	215882..216166	+	94	67458591	-	RF_0199	-	hypothetical protein
200	 31.82	0	216217..216678	+	153	67458592	-	RF_0200	-	hypothetical protein
201	 26.39	-1	216818..217105	+	95	67458593	himA	RF_0201	-	integration host factor alpha-subunit
202	 30.65	0	217095..217541	+	148	67458594	-	RF_0202	-	hypothetical protein
203	 36.18	+1	217545..218528	+	327	67458595	-	RF_0203	-	Beta-glucosidase
204	 30.69	0	218905..219510	+	201	67458596	spoT11	RF_0204	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
205	 38.05	+1	219976..224940	+	1654	67458597	rompB	RF_0205	-	Outer membrane protein B
206	 28.55	0	225597..227831	+	744	67458598	-	RF_0206	-	hypothetical protein
207	 33.88	0	227828..229849	-	673	67458599	ccmF	RF_0207	-	cytochrome c-type biogenesis protein CcmF
208	 33.41	0	229842..231116	-	424	67458600	-	RF_0208	-	hemolysin-like protein
209	 30.91	0	231378..233237	-	619	67458601	-	RF_0209	-	hypothetical protein
210	 32.88	0	233302..233967	-	221	67458602	lolD	RF_0210	-	lipoprotein releasing system ATP-binding protein LolD
211	 32.05	0	233960..235207	-	415	67458603	-	RF_0211	-	lipoprotein releasing system, transmembrane protein
212	 31.72	0	235334..236509	-	391	67458604	bcr2	RF_0212	-	bicyclomycin resistance protein
213	 35.34	0	237094..237342	-	82	67458605	-	RF_0213	-	hypothetical protein
214	 30.53	0	237670..239415	-	581	67458606	msbA2	RF_0214	-	multidrug resistance protein
215	 30.49	0	239786..240031	+	81	67458607	-	RF_0215	-	hypothetical protein
216	 34.68	0	240012..240383	+	123	67458608	-	RF_0216	-	hypothetical protein
217	 36.00	+1	240358..241032	+	224	67458609	exsB	RF_0217	-	trans-regulatory protein ExsB
218	 29.71	0	241029..241580	+	183	67458610	rimJ	RF_0218	-	ribosomal-protein-alanine acetyltransferase
219	 35.45	0	241731..243008	+	425	67458611	clpX	RF_0219	-	ATP-dependent protease ATP-binding subunit
220	 32.90	0	243353..243817	-	154	67458612	-	RF_0220	-	hypothetical protein
221	 29.78	0	243817..245112	-	431	67458613	-	RF_0221	-	putative oxidoreductase protein
222	 29.39	0	245558..247486	+	642	67458614	-	RF_0222	-	hypothetical protein
223	 30.41	0	247570..248766	+	398	67458615	-	RF_0223	-	hypothetical protein
224	 30.05	0	248777..249691	+	304	67458616	-	RF_0224	-	hypothetical protein
225	 34.27	0	249707..250993	-	428	67458617	-	RF_0225	-	hypothetical protein
226	 31.01	0	251243..252448	+	401	67458618	-	RF_0226	-	ATPase
227	 29.78	0	252508..253239	-	243	67458619	-	RF_0227	-	hypothetical protein
228	 31.37	0	253385..254149	-	254	67458620	-	RF_0228	-	hypothetical protein
229	 35.93	+1	254106..256685	-	859	67458621	valS	RF_0229	-	valyl-tRNA synthetase
230	 30.15	0	256803..257744	-	313	67458622	-	RF_0230	-	transposase
231	 32.38	0	257835..258677	+	280	67458623	ubiA	RF_0231	-	prenyltransferase
232	 29.87	0	258743..259204	+	153	67458624	-	RF_0232	-	hypothetical protein
233	 36.06	+1	259201..260595	-	464	67458625	proP4	RF_0233	-	proline/betaine transporter
234	 35.27	0	260929..261549	+	206	67458626	tdk	RF_0234	-	thymidylate kinase
235	 36.45	+1	261691..263229	+	512	67458627	metG	RF_0235	-	methionyl-tRNA synthetase
236	 34.94	0	263371..264243	+	290	67458628	tatD	RF_0236	-	putative deoxyribonuclease, hydrolase
237	 29.46	0	264478..265485	+	335	67458629	-	RF_0237	-	hypothetical protein
238	 33.57	0	265649..266926	+	425	67458630	-	RF_0238	-	Poly-beta-hydroxyalkanoate depolymerase
239	 26.05	-1	267222..267482	-	86	67458631	-	RF_0239	-	hypothetical protein
240	 26.04	-1	267971..268354	-	127	67458632	-	RF_0240	-	hypothetical protein
241	 30.15	0	268356..269393	-	345	67458633	manC	RF_0241	-	mannose-1-phosphate guanylyltransferase
242	 30.57	0	269457..270287	-	276	67458634	mutM	RF_0242	-	formamidopyrimidine-DNA glycosidase
243	 31.19	0	270316..271062	+	248	67458635	ubiE	RF_0243	-	ubiquinone/menaquinone biosynthesis methyltransferase
244	 36.53	+1	271059..272495	+	478	67458636	ubiB	RF_0244	-	2-polyprenylphenol 6-hydroxylase
245	 36.24	+1	272876..273322	+	148	67458637	-	RF_0245	-	hypothetical protein
246	 30.92	0	273434..275215	+	593	67458638	-	RF_0246	-	hypothetical protein
247	 32.98	0	275336..276478	+	380	67458639	-	RF_0247	-	ATPase
248	 33.85	0	276622..277965	-	447	67458640	engA	RF_0248	-	GTP-binding protein EngA
249	 35.75	0	277968..278381	-	137	67458641	-	RF_0249	-	hypothetical protein
250	 29.50	0	278385..279167	-	260	67458642	xth2	RF_0250	-	exodeoxyribonuclease III
251	 28.72	0	279164..280246	-	360	67458643	-	RF_0251	-	hypothetical protein
252	 31.26	0	280301..280735	-	144	67458644	-	RF_0252	-	hypothetical protein
253	 31.82	0	280857..282245	-	462	67458645	xseA	RF_0253	-	exodeoxyribonuclease VII large subunit
254	 31.37	0	282464..284605	+	713	67458646	ostA	RF_0254	-	organic solvent tolerance protein
255	 29.74	0	284807..285697	+	296	67458647	-	RF_0255	-	hypothetical protein
256	 33.74	0	285842..286573	+	243	67458648	ksgA	RF_0256	-	dimethyladenosine transferase
257	 24.28	-2	286922..287164	-	80	67458649	-	RF_0257	-	hypothetical protein
258	 24.67	-1	287526..288056	-	176	67458650	-	RF_0258	-	hypothetical protein
259	 34.65	0	288352..289113	+	253	67458651	-	RF_0259	-	protein phosphatase
260	 25.23	-1	289490..290131	-	213	67458652	-	RF_0260	-	TPR repeat-containing protein
261	 27.13	-1	291012..291140	-	42	67458653	-	RF_0261	-	hypothetical protein
262	 34.74	0	291256..291468	+	70	67458654	cspA	RF_0262	-	cold shock-like protein
263	 33.76	0	292119..292355	+	78	67458655	-	RF_0263	-	ATP-dependent RNA helicase RhlE
264	 33.62	0	292303..293364	+	353	67458656	-	RF_0264	-	ATP-dependent RNA helicase RhlE
265	 30.42	0	293766..294725	+	319	67458657	ampG2	RF_0265	-	AmpG protein
266	 28.75	0	294891..296111	-	406	67458658	-	RF_0266	-	ankyrin repeat-containing protein
267	 35.95	+1	296481..297053	+	190	67458659	-	RF_0267	-	NifU-like domain-containing protein
268	 32.11	0	297194..297682	-	162	67458660	ecoT	RF_0268	-	ecotin precursor
269	 24.67	-1	297700..298611	-	303	67458661	-	RF_0269	-	hypothetical protein
270	 37.75	+1	298620..299978	-	452	67458662	ftsZ	RF_0270	-	cell division protein FtsZ
271	 29.11	0	300217..300642	-	141	67458663	-	RF_0271	-	toxin of toxin-antitoxin system
272	 32.13	0	300639..300887	-	82	67458664	-	RF_0272	-	antitoxin of toxin-antitoxin system Phd
273	 35.64	0	300991..302376	-	461	67458665	fumC	RF_0273	-	fumarate hydratase
274	 23.84	-2	302373..302825	-	150	67458666	-	RF_0274	-	hypothetical protein
275	 29.60	0	302936..303658	-	240	67458667	-	RF_0275	-	tRNA/rRNA methyltransferase
276	 38.82	+1	304264..305448	+	394	67458668	tuf	RF_0276	-	elongation factor Tu
277	 32.08	0	305544..305861	+	105	67458669	rpsJ	RF_0277	-	30S ribosomal protein S10
278	 32.41	0	305862..306509	+	215	67458670	rplC	RF_0278	-	50S ribosomal protein L3
279	 32.69	0	306782..307405	+	207	67458671	rplD	RF_0279	-	50S ribosomal protein L4
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.