IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
138	 32.70	0	154861..155178	-	105	67458530	-	RF_0138	-	site-specific DNA methylase
139	 38.05	+1	155204..157111	-	635	67458531	ftsH	RF_0139	-	ATP-dependent metalloprotease FtsH
140	 29.08	0	157333..158625	-	430	67458532	tilS	RF_0140	-	tRNA(Ile)-lysidine synthetase TilS
141	 30.81	0	158904..159419	-	171	67458533	rplI	RF_0141	-	50S ribosomal protein L9
142	 32.64	0	159431..159718	-	95	67458534	rpsR	RF_0142	-	30S ribosomal protein S18
143	 26.78	-1	159743..160108	-	121	162022125	rpsF	RF_0143	-	30S ribosomal protein S6
144	 24.66	-1	160292..160660	+	122	67458536	-	RF_0144	-	hypothetical protein
145	 30.82	0	161139..162332	+	397	67458537	aco1	RF_0145	-	Acyl-CoA desaturase 1
146	 36.24	+1	162528..163697	+	389	67458538	gcp	RF_0146	-	O-sialoglycoprotein endopeptidase
147	 25.81	-1	163787..164278	+	163	67458539	-	RF_0147	-	hypothetical protein
148	 29.97	0	164347..165120	-	257	67458540	-	RF_0148	-	hypothetical protein
149	 31.65	0	165277..165633	-	118	67458541	-	RF_0149	-	ClpB protein
150	 38.27	+1	165727..167853	-	708	67458542	-	RF_0150	-	ClpB protein
151	 33.25	0	167966..169132	+	388	67458543	-	RF_0151	-	hypothetical protein
152	 31.55	0	169613..169948	+	111	67458544	-	RF_0152	-	hypothetical protein
153	 37.33	+1	169948..170673	+	241	67458545	phbB	RF_0153	-	acetoacetyl-CoA reductase
154	 30.40	0	170700..172304	+	534	67458546	-	RF_0154	-	hypothetical protein
155	 28.42	0	172226..172612	+	128	67458547	-	RF_0155	-	hypothetical protein
156	 34.39	0	172626..173948	+	440	67458548	-	RF_0156	-	hypothetical protein
157	 28.12	-1	174157..174444	+	95	67458549	-	RF_0157	-	hypothetical protein
158	 33.54	0	174533..175486	+	317	67458550	-	RF_0158	-	transposase
159	 31.28	0	175561..175803	+	80	67458551	-	RF_0159	-	transposase
160	 30.58	0	176012..176338	+	108	67458552	-	RF_0160	-	hypothetical protein
161	 32.93	0	176566..178065	-	499	67458553	tlc5	RF_0161	-	ADP,ATP carrier protein
162	 28.95	0	178289..179338	+	349	67458554	phbC	RF_0162	-	Poly-beta-hydroxybutyrate polymerase
163	 41.22	+2	179335..180513	+	392	67458555	paaJ	RF_0163	-	acetyl-CoA acetyltransferase
164	 29.56	0	180581..181243	-	220	67458556	-	RF_0164	-	hypothetical protein
165	 30.22	0	181625..184711	+	1028	67458557	-	RF_0165	-	superfamily I DNA/RNA helicase
166	 30.12	0	184769..185701	-	310	67458558	-	RF_0166	-	sugar kinase
167	 26.92	-1	186920..187402	+	160	67458559	-	RF_0167	-	hypothetical protein
168	 29.47	0	187685..187969	+	94	67458560	-	RF_0168	-	hypothetical protein
169	 31.56	0	187908..188189	+	93	67458561	-	RF_0169	-	hypothetical protein
170	 26.59	-1	188363..189682	-	439	67458562	-	RF_0170	-	hypothetical protein
171	 35.14	0	189855..190796	-	313	67458563	fabD	RF_0171	-	acyl-carrier-protein S-malonyltransferase
172	 23.58	-2	191256..191573	+	105	67458564	-	RF_0172	-	hypothetical protein
173	 23.29	-2	191748..192215	+	155	67458565	-	RF_0173	-	hypothetical protein
174	 31.25	0	193206..195653	-	815	67458566	-	RF_0174	-	ATP-dependent helicase
175	 32.31	0	195793..196473	-	226	67458567	surf1	RF_0175	-	Surfeit locus protein 1
176	 34.20	0	196606..197295	-	229	67458568	dnaQ	RF_0176	-	DNA polymerase III subunit epsilon
177	 29.69	0	197541..198116	-	191	67458569	coaE	RF_0177	-	dephospho-CoA kinase
178	 29.89	0	198110..198922	-	270	67458570	-	RF_0178	-	hypothetical protein
179	 27.93	-1	199563..200099	+	178	67458571	-	RF_0179	-	hypothetical protein
180	 33.77	0	200109..200567	+	152	67458572	rnhA	RF_0180	-	ribonuclease H
181	 31.33	0	200555..200854	+	99	67458573	-	RF_0181	-	hypothetical protein
182	 30.89	0	200880..201329	+	149	67458574	-	RF_0182	-	ABC transporter substrate binding protein
183	 35.44	0	201491..201775	+	94	67458575	-	RF_0183	-	hypothetical protein
184	 26.71	-1	201784..202236	+	150	67458576	-	RF_0184	-	hypothetical protein
185	 25.24	-1	202588..203118	-	176	67458577	-	RF_0185	-	hypothetical protein
186	 31.43	0	203457..204767	+	436	67458578	proP10	RF_0186	-	proline/betaine transporter
187	 30.25	0	204700..205218	-	172	67458579	-	RF_0187	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein SpoT4
188	 30.99	0	205261..205431	-	56	67458580	-	RF_0188	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein SpoT4
189	 25.83	-1	205556..205795	-	79	67458581	-	RF_0189	-	hypothetical protein
190	 28.11	-1	206476..206877	+	133	67458582	-	RF_0190	-	hypothetical protein
191	 41.07	+2	206923..208008	+	361	67458583	tgt	RF_0191	-	queuine tRNA-ribosyltransferase
192	 35.12	0	208171..210291	+	706	67458584	ligA	RF_0192	-	NAD-dependent DNA ligase LigA
193	 29.93	0	210363..210773	+	136	67458585	-	RF_0193	-	hypothetical protein
194	 31.00	0	211237..212007	+	256	67458586	-	RF_0194	-	hypothetical protein
195	 30.64	0	212154..213008	+	284	67458587	-	RF_0195	-	periplasmic protein
196	 29.75	0	213170..214147	+	325	67458588	lpxK	RF_0196	-	tetraacyldisaccharide 4'-kinase
197	 33.22	0	214110..214982	+	290	67458589	htrB	RF_0197	-	lipid A biosynthesis lauroyl acyltransferase
198	 30.98	0	215125..215592	-	155	67458590	bcp	RF_0198	-	bacterioferritin comigratory protein
199	 26.32	-1	215882..216166	+	94	67458591	-	RF_0199	-	hypothetical protein
200	 31.82	0	216217..216678	+	153	67458592	-	RF_0200	-	hypothetical protein
201	 26.39	-1	216818..217105	+	95	67458593	himA	RF_0201	-	integration host factor alpha-subunit
202	 30.65	0	217095..217541	+	148	67458594	-	RF_0202	-	hypothetical protein
203	 36.18	+1	217545..218528	+	327	67458595	-	RF_0203	-	Beta-glucosidase
204	 30.69	0	218905..219510	+	201	67458596	spoT11	RF_0204	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
205	 38.05	+1	219976..224940	+	1654	67458597	rompB	RF_0205	-	Outer membrane protein B
206	 28.55	0	225597..227831	+	744	67458598	-	RF_0206	-	hypothetical protein
207	 33.88	0	227828..229849	-	673	67458599	ccmF	RF_0207	-	cytochrome c-type biogenesis protein CcmF
208	 33.41	0	229842..231116	-	424	67458600	-	RF_0208	-	hemolysin-like protein
209	 30.91	0	231378..233237	-	619	67458601	-	RF_0209	-	hypothetical protein
210	 32.88	0	233302..233967	-	221	67458602	lolD	RF_0210	-	lipoprotein releasing system ATP-binding protein LolD
211	 32.05	0	233960..235207	-	415	67458603	-	RF_0211	-	lipoprotein releasing system, transmembrane protein
212	 31.72	0	235334..236509	-	391	67458604	bcr2	RF_0212	-	bicyclomycin resistance protein
213	 35.34	0	237094..237342	-	82	67458605	-	RF_0213	-	hypothetical protein
214	 30.53	0	237670..239415	-	581	67458606	msbA2	RF_0214	-	multidrug resistance protein
215	 30.49	0	239786..240031	+	81	67458607	-	RF_0215	-	hypothetical protein
216	 34.68	0	240012..240383	+	123	67458608	-	RF_0216	-	hypothetical protein
217	 36.00	+1	240358..241032	+	224	67458609	exsB	RF_0217	-	trans-regulatory protein ExsB
218	 29.71	0	241029..241580	+	183	67458610	rimJ	RF_0218	-	ribosomal-protein-alanine acetyltransferase
219	 35.45	0	241731..243008	+	425	67458611	clpX	RF_0219	-	ATP-dependent protease ATP-binding subunit
220	 32.90	0	243353..243817	-	154	67458612	-	RF_0220	-	hypothetical protein
221	 29.78	0	243817..245112	-	431	67458613	-	RF_0221	-	putative oxidoreductase protein
222	 29.39	0	245558..247486	+	642	67458614	-	RF_0222	-	hypothetical protein
223	 30.41	0	247570..248766	+	398	67458615	-	RF_0223	-	hypothetical protein
224	 30.05	0	248777..249691	+	304	67458616	-	RF_0224	-	hypothetical protein
225	 34.27	0	249707..250993	-	428	67458617	-	RF_0225	-	hypothetical protein
226	 31.01	0	251243..252448	+	401	67458618	-	RF_0226	-	ATPase
227	 29.78	0	252508..253239	-	243	67458619	-	RF_0227	-	hypothetical protein
228	 31.37	0	253385..254149	-	254	67458620	-	RF_0228	-	hypothetical protein
229	 35.93	+1	254106..256685	-	859	67458621	valS	RF_0229	-	valyl-tRNA synthetase
230	 30.15	0	256803..257744	-	313	67458622	-	RF_0230	-	transposase
231	 32.38	0	257835..258677	+	280	67458623	ubiA	RF_0231	-	prenyltransferase
232	 29.87	0	258743..259204	+	153	67458624	-	RF_0232	-	hypothetical protein
233	 36.06	+1	259201..260595	-	464	67458625	proP4	RF_0233	-	proline/betaine transporter
234	 35.27	0	260929..261549	+	206	67458626	tdk	RF_0234	-	thymidylate kinase
235	 36.45	+1	261691..263229	+	512	67458627	metG	RF_0235	-	methionyl-tRNA synthetase
236	 34.94	0	263371..264243	+	290	67458628	tatD	RF_0236	-	putative deoxyribonuclease, hydrolase
237	 29.46	0	264478..265485	+	335	67458629	-	RF_0237	-	hypothetical protein
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.