IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
91	 35.45	0	99973..102906	+	977	67458483	virB6_3	RF_0091	-	TrbL/VirB6 plasmid conjugative transfer protein
92	 32.96	0	103135..105807	+	890	67458484	virB6_4	RF_0092	-	TrbL/VirB6 plasmid conjugative transfer protein
93	 33.85	0	105951..109418	+	1155	67458485	virB6_5	RF_0093	-	TrbL/VirB6 plasmid conjugative transfer protein
94	 31.65	0	109503..109739	+	78	67458486	vapB2	RF_0094	-	antitoxin of toxin-antitoxin system VapB
95	 25.68	-1	109736..110140	+	134	67458487	vapC2	RF_0095	-	toxin of toxin-antitoxin system
96	 39.71	+2	110265..111314	+	349	67458488	pta	RF_0096	-	phosphate acetyltransferase
97	 32.52	0	111250..112473	+	407	67458489	ackA	RF_0097	-	acetate kinase
98	 34.04	0	112672..112956	+	94	67458490	-	RF_0098	-	hypothetical protein
99	 38.01	+1	113044..113748	+	234	67458491	trmD	RF_0099	-	tRNA (guanine-N(1)-)-methyltransferase
100	 34.29	0	113767..114183	+	138	67458492	rplS	RF_0100	-	50S ribosomal protein L19
101	 34.13	0	114492..115244	+	250	67458493	-	RF_0101	-	transposase
102	 29.01	0	115319..115480	+	53	67458494	-	RF_0102	-	transposase
103	 33.92	0	115583..116431	-	282	67458495	-	RF_0103	-	transposase
104	 30.03	0	116930..117232	-	100	67458496	secG	RF_0104	-	preprotein translocase subunit SecG
105	 31.28	0	117487..117729	-	80	67458497	-	RF_0105	-	transposase
106	 33.33	0	117804..118757	-	317	67458498	-	RF_0106	-	transposase
107	 36.63	+1	118779..120992	-	737	67458499	parC	RF_0107	-	DNA topoisomerase IV subunit A
108	 29.93	0	121332..122006	-	224	67458500	-	RF_0108	-	hypothetical protein
109	 34.08	0	122140..123870	-	576	67458501	argS	RF_0109	-	arginyl-tRNA synthetase
110	 33.33	0	123876..125027	-	383	67458502	dgt	RF_0110	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
111	 35.32	0	125133..125585	+	150	67458503	iscA1	RF_0111	-	Iron-sulfur cluster assembly accessory protein
112	 29.75	0	125851..129921	-	1356	67458504	-	RF_0112	-	hypothetical protein
113	 34.91	0	130596..131420	-	274	67458505	kdsA	RF_0113	-	2-dehydro-3-deoxyphosphooctonate aldolase
114	 20.75	-2	131456..131773	-	105	67458506	-	RF_0114	-	hypothetical protein
115	 30.22	0	131776..133443	-	555	67458507	abcT1	RF_0115	-	putative ABC transporter ATP-binding protein
116	 27.76	-1	133635..134495	-	286	67458508	-	RF_0116	-	ParB-like partition proteins
117	 27.99	-1	134482..135249	-	255	67458509	soj	RF_0117	-	ATPase involved in chromosome partitioning
118	 24.35	-1	135246..135824	-	192	67458510	gidB	RF_0118	-	glucose-inhibited division protein B
119	 32.80	0	135805..137673	-	622	67458511	gidA	RF_0119	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
120	 32.39	0	137677..138099	-	140	67458512	ndk	RF_0120	-	nucleoside diphosphate kinase
121	 34.96	0	138129..139418	-	429	67458513	uhpC	RF_0121	-	sugar phosphate permease
122	 31.80	0	139486..140982	-	498	67458514	tlc1	RF_0122	-	ADP,ATP carrier protein
123	 32.11	0	141399..142298	+	299	67458515	dam	RF_0123	-	site-specific DNA adenine methylase
124	 30.52	0	142802..143476	+	224	67458516	def3	RF_0124	-	polypeptide deformylase
125	 34.46	0	143745..143921	-	58	67458517	-	RF_0125	-	hypothetical protein
126	 30.52	0	143902..144648	-	248	67458518	-	RF_0126	-	hypothetical protein
127	 29.54	0	144931..145563	-	210	67458519	-	RF_0127	-	tellurite resistance protein-related protein
128	 32.16	0	145799..146224	+	141	67458520	-	RF_0128	-	hypothetical protein
129	 33.16	0	146328..146906	-	192	67458521	-	RF_0129	-	hypothetical protein
130	 29.49	0	146922..147467	-	181	67458522	pgsA	RF_0130	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
131	 30.66	0	147471..149153	-	560	67458523	yidC	RF_0131	-	putative inner membrane protein translocase component YidC
132	 27.25	-1	149311..150477	-	388	67458524	-	RF_0132	-	hypothetical protein
133	 30.38	0	150719..151498	+	259	67458525	lgt	RF_0133	-	prolipoprotein diacylglyceryl transferase
134	 33.74	0	151477..152700	+	407	67458526	-	RF_0134	-	hypothetical protein
135	 31.89	0	152697..153113	-	138	67458527	-	RF_0135	-	hypothetical protein
136	 38.68	+1	153147..153932	-	261	67458528	sdhB	RF_0136	-	succinate dehydrogenase iron-sulfur subunit
137	 31.78	0	154251..154766	-	171	67458529	-	RF_0137	-	site-specific DNA methylase
138	 32.70	0	154861..155178	-	105	67458530	-	RF_0138	-	site-specific DNA methylase
139	 38.05	+1	155204..157111	-	635	67458531	ftsH	RF_0139	-	ATP-dependent metalloprotease FtsH
140	 29.08	0	157333..158625	-	430	67458532	tilS	RF_0140	-	tRNA(Ile)-lysidine synthetase TilS
141	 30.81	0	158904..159419	-	171	67458533	rplI	RF_0141	-	50S ribosomal protein L9
142	 32.64	0	159431..159718	-	95	67458534	rpsR	RF_0142	-	30S ribosomal protein S18
143	 26.78	-1	159743..160108	-	121	162022125	rpsF	RF_0143	-	30S ribosomal protein S6
144	 24.66	-1	160292..160660	+	122	67458536	-	RF_0144	-	hypothetical protein
145	 30.82	0	161139..162332	+	397	67458537	aco1	RF_0145	-	Acyl-CoA desaturase 1
146	 36.24	+1	162528..163697	+	389	67458538	gcp	RF_0146	-	O-sialoglycoprotein endopeptidase
147	 25.81	-1	163787..164278	+	163	67458539	-	RF_0147	-	hypothetical protein
148	 29.97	0	164347..165120	-	257	67458540	-	RF_0148	-	hypothetical protein
149	 31.65	0	165277..165633	-	118	67458541	-	RF_0149	-	ClpB protein
150	 38.27	+1	165727..167853	-	708	67458542	-	RF_0150	-	ClpB protein
151	 33.25	0	167966..169132	+	388	67458543	-	RF_0151	-	hypothetical protein
152	 31.55	0	169613..169948	+	111	67458544	-	RF_0152	-	hypothetical protein
153	 37.33	+1	169948..170673	+	241	67458545	phbB	RF_0153	-	acetoacetyl-CoA reductase
154	 30.40	0	170700..172304	+	534	67458546	-	RF_0154	-	hypothetical protein
155	 28.42	0	172226..172612	+	128	67458547	-	RF_0155	-	hypothetical protein
156	 34.39	0	172626..173948	+	440	67458548	-	RF_0156	-	hypothetical protein
157	 28.12	-1	174157..174444	+	95	67458549	-	RF_0157	-	hypothetical protein
158	 33.54	0	174533..175486	+	317	67458550	-	RF_0158	-	transposase
159	 31.28	0	175561..175803	+	80	67458551	-	RF_0159	-	transposase
160	 30.58	0	176012..176338	+	108	67458552	-	RF_0160	-	hypothetical protein
161	 32.93	0	176566..178065	-	499	67458553	tlc5	RF_0161	-	ADP,ATP carrier protein
162	 28.95	0	178289..179338	+	349	67458554	phbC	RF_0162	-	Poly-beta-hydroxybutyrate polymerase
163	 41.22	+2	179335..180513	+	392	67458555	paaJ	RF_0163	-	acetyl-CoA acetyltransferase
164	 29.56	0	180581..181243	-	220	67458556	-	RF_0164	-	hypothetical protein
165	 30.22	0	181625..184711	+	1028	67458557	-	RF_0165	-	superfamily I DNA/RNA helicase
166	 30.12	0	184769..185701	-	310	67458558	-	RF_0166	-	sugar kinase
167	 26.92	-1	186920..187402	+	160	67458559	-	RF_0167	-	hypothetical protein
168	 29.47	0	187685..187969	+	94	67458560	-	RF_0168	-	hypothetical protein
169	 31.56	0	187908..188189	+	93	67458561	-	RF_0169	-	hypothetical protein
170	 26.59	-1	188363..189682	-	439	67458562	-	RF_0170	-	hypothetical protein
171	 35.14	0	189855..190796	-	313	67458563	fabD	RF_0171	-	acyl-carrier-protein S-malonyltransferase
172	 23.58	-2	191256..191573	+	105	67458564	-	RF_0172	-	hypothetical protein
173	 23.29	-2	191748..192215	+	155	67458565	-	RF_0173	-	hypothetical protein
174	 31.25	0	193206..195653	-	815	67458566	-	RF_0174	-	ATP-dependent helicase
175	 32.31	0	195793..196473	-	226	67458567	surf1	RF_0175	-	Surfeit locus protein 1
176	 34.20	0	196606..197295	-	229	67458568	dnaQ	RF_0176	-	DNA polymerase III subunit epsilon
177	 29.69	0	197541..198116	-	191	67458569	coaE	RF_0177	-	dephospho-CoA kinase
178	 29.89	0	198110..198922	-	270	67458570	-	RF_0178	-	hypothetical protein
179	 27.93	-1	199563..200099	+	178	67458571	-	RF_0179	-	hypothetical protein
180	 33.77	0	200109..200567	+	152	67458572	rnhA	RF_0180	-	ribonuclease H
181	 31.33	0	200555..200854	+	99	67458573	-	RF_0181	-	hypothetical protein
182	 30.89	0	200880..201329	+	149	67458574	-	RF_0182	-	ABC transporter substrate binding protein
183	 35.44	0	201491..201775	+	94	67458575	-	RF_0183	-	hypothetical protein
184	 26.71	-1	201784..202236	+	150	67458576	-	RF_0184	-	hypothetical protein
185	 25.24	-1	202588..203118	-	176	67458577	-	RF_0185	-	hypothetical protein
186	 31.43	0	203457..204767	+	436	67458578	proP10	RF_0186	-	proline/betaine transporter
187	 30.25	0	204700..205218	-	172	67458579	-	RF_0187	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein SpoT4
188	 30.99	0	205261..205431	-	56	67458580	-	RF_0188	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein SpoT4
189	 25.83	-1	205556..205795	-	79	67458581	-	RF_0189	-	hypothetical protein
190	 28.11	-1	206476..206877	+	133	67458582	-	RF_0190	-	hypothetical protein
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.