IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1223	 32.11	0	1287813..1288058	+	81	162022118	acpP	RF_1223	-	acyl carrier protein
1224	 40.28	+2	1288094..1289374	+	426	67459616	fabF	RF_1224	-	3-oxoacyl-(acyl carrier protein) synthase II
1225	 31.22	0	1289523..1291364	+	613	67459617	uup	RF_1225	-	ABC transporter ATP-binding protein Uup
1226	 27.96	-1	1291445..1292542	+	365	67459618	-	RF_1226	-	hypothetical protein
1227	 30.35	0	1292823..1293425	-	200	67459619	-	RF_1227	-	ATPase
1228	 28.05	-1	1293674..1293976	-	100	67459620	-	RF_1228	-	ATPase
1229	 31.78	0	1294192..1294770	-	192	67459621	gmk	RF_1229	-	guanylate kinase
1230	 29.66	0	1294907..1295233	-	108	67459622	-	RF_1230	-	hypothetical protein
1231	 28.93	0	1295748..1296587	-	279	67459623	mreC	RF_1231	-	rod shape-determining protein MreC
1232	 39.96	+2	1296590..1297630	-	346	67459624	mreB	RF_1232	-	rod shape-determining protein MreB
1233	 22.77	-2	1297841..1298929	-	362	67459625	-	RF_1233	-	permease
1234	 36.31	+1	1299521..1299991	-	156	67459626	pal	RF_1234	-	peptidoglycan-associated lipoprotein precursor
1235	 37.63	+1	1300334..1301287	-	317	67459627	fabH	RF_1235	-	3-oxoacyl-(acyl carrier protein) synthase III
1236	 36.32	+1	1301301..1301501	-	66	67459628	rpmF	RF_1236	-	50S ribosomal protein L32
1237	 31.22	0	1301597..1302070	+	157	67459629	-	RF_1237	-	hypothetical protein
1238	 35.53	0	1302255..1303166	+	303	67459630	ftsY	RF_1238	-	Signal recognition particle-docking protein FtsY
1239	 34.45	0	1303312..1306080	+	922	67459631	polA	RF_1239	-	DNA polymerase I
1240	 27.49	-1	1306384..1306725	+	113	67459632	-	RF_1240	-	HicB family protein
1241	 38.77	+1	1306766..1307317	+	183	67459633	-	RF_1241	-	S-adenosylmethionine synthetase MetK
1242	 41.07	+2	1307508..1307882	+	124	67459634	-	RF_1242	-	S-adenosylmethionine synthetase MetK
1243	 29.00	0	1308002..1310332	+	776	67459635	-	RF_1243	-	hypothetical protein
1244	 35.57	0	1310602..1314225	-	1207	67459636	dnaE	RF_1244	-	DNA polymerase III subunit alpha
1245	 31.33	0	1314369..1315715	-	448	67459637	udg	RF_1245	-	UDP-glucose 6-dehydrogenase
1246	 26.97	-1	1315965..1318478	+	837	67459638	-	RF_1246	-	hypothetical protein
1247	 31.83	0	1318488..1319753	+	421	67459639	ampG3	RF_1247	-	AmpG protein
1248	 28.44	0	1319820..1320575	+	251	67459640	tatC	RF_1248	-	Sec-independent protein translocase protein TatC
1249	 33.80	0	1320553..1321830	+	425	67459641	serS	RF_1249	-	seryl-tRNA synthetase
1250	 27.50	-1	1322075..1324507	+	810	67459642	virB4_2	RF_1250	-	type IV secretion/conjugal transfer ATPase
1251	 35.70	0	1324896..1328396	+	1166	67459643	-	RF_1251	-	hypothetical protein
1252	 26.49	-1	1328532..1329305	+	257	67459644	terC	RF_1252	-	tellurium resistance protein TerC
1253	 31.65	0	1329349..1330062	+	237	67459645	-	RF_1253	-	hypothetical protein
1254	 33.20	0	1330230..1331759	+	509	67459646	-	RF_1254	-	hypothetical protein
1255	 29.45	0	1332023..1332640	+	205	67459647	nuoJ	RF_1255	-	NADH dehydrogenase subunit J
1256	 29.52	0	1332633..1332947	+	104	162022117	nuoK	RF_1256	-	NADH dehydrogenase subunit K
1257	 35.19	0	1332949..1334886	+	645	67459649	nuoL1	RF_1257	-	NADH dehydrogenase subunit L
1258	 33.06	0	1335037..1336518	+	493	67459650	nuoM	RF_1258	-	NADH dehydrogenase subunit M
1259	 33.88	0	1336540..1337265	+	241	67459651	ccmA	RF_1259	-	cytochrome c biogenesis protein CcmA
1260	 39.17	+1	1337687..1338166	-	159	67459652	nuoI	RF_1260	-	NADH dehydrogenase subunit I
1261	 36.67	+1	1338352..1339371	-	339	67459653	nuoH	RF_1261	-	NADH dehydrogenase subunit H
1262	 37.50	+1	1339540..1341555	-	671	67459654	nuoG	RF_1262	-	NADH dehydrogenase subunit G
1263	 33.85	0	1341558..1341947	-	129	67459655	-	RF_1263	-	hypothetical protein
1264	 36.41	+1	1342062..1344698	-	878	67459656	acnA	RF_1264	-	aconitate hydratase
1265	 35.10	0	1344920..1345258	-	112	67459657	atpC	RF_1265	-	F0F1 ATP synthase subunit epsilon
1266	 41.00	+2	1345390..1346916	-	508	67459658	atpD	RF_1266	-	F0F1 ATP synthase subunit beta
1267	 28.37	0	1346945..1347811	-	288	67459659	atpG	RF_1267	-	F0F1 ATP synthase subunit gamma
1268	 38.42	+1	1347991..1349523	-	510	67459660	atpA	RF_1268	-	F0F1 ATP synthase subunit alpha
1269	 24.86	-1	1349711..1350265	-	184	67459661	atpH	RF_1269	-	F0F1 ATP synthase subunit delta
1270	 36.45	+1	1350262..1351641	-	459	67459662	lpdA1	RF_1270	-	dihydrolipoamide dehydrogenase
1271	 33.33	0	1351783..1352211	-	142	67459663	-	RF_1271	-	Strees induced DNA-binding protein
1272	 30.11	0	1352283..1352561	-	92	67459664	-	RF_1272	-	cytotoxic translational repressor of toxin-antitoxin system RelE
1273	 32.88	0	1352552..1352770	-	72	67459665	-	RF_1273	-	hypothetical protein
1274	 32.97	0	1352962..1354068	+	368	67459666	-	RF_1274	-	hypothetical protein
1275	 31.09	0	1354149..1354949	-	266	67459667	blaD	RF_1275	-	Beta-lactamase class D
1276	 36.37	+1	1355126..1357498	-	790	67459668	mrcA	RF_1276	-	1A family penicillin-binding protein
1277	 31.27	0	1357514..1358773	-	419	67459669	-	RF_1277	-	ATPase
1278	 37.00	+1	1358842..1360179	-	445	67459670	miaB	RF_1278	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1279	 30.39	0	1360783..1360986	-	67	67459671	-	RF_1279	-	nucleotidyltransferase/HEPN domain-containing protein
1280	 32.20	0	1360955..1361659	-	234	67459672	-	RF_1280	-	nucleotidyltransferase/HEPN domain-containing protein
1281	 29.51	0	1361673..1362509	-	278	67459673	-	RF_1281	-	hypothetical protein
1282	 35.12	0	1362741..1363244	-	167	67459674	-	RF_1282	-	hypothetical protein
1283	 35.65	0	1363213..1364940	-	575	67459675	kefB	RF_1283	-	glutathione-regulated potassium-efflux system protein KefB
1284	 29.66	0	1364937..1365263	-	108	67459676	-	RF_1284	-	Iojap-related protein
1285	 26.67	-1	1365429..1365668	+	79	67459677	bolA2	RF_1285	-	morphology/transcriptional regulatory  protein BolA
1286	 23.29	-2	1366000..1366248	+	82	67459678	-	RF_1286	-	cytotoxic translational repressor of toxin-antitoxin system RelE
1287	 28.33	0	1366257..1366616	+	119	67459679	-	RF_1287	-	Phage-related transcriptional regulator
1288	 29.31	0	1366740..1367186	-	148	67459680	-	RF_1288	-	hypothetical protein
1289	 42.18	+2	1367446..1367886	+	146	67459681	-	RF_1289	-	hypothetical protein
1290	 41.73	+2	1368059..1374658	-	2199	67459682	sca13	RF_1290	-	cell surface antigen-like protein Sca13
1291	 38.89	+1	1375035..1376708	-	557	67459683	sca9	RF_1291	-	cell surface antigen-like protein Sca9
1292	 35.65	0	1377524..1377739	+	71	67459684	infA	RF_1292	-	translation initiation factor IF-1
1293	 34.97	0	1377751..1378362	+	203	67459685	maf	RF_1293	-	Maf-like protein
1294	 32.18	0	1378521..1378952	-	143	67459686	dksA	RF_1294	-	DnaK suppressor protein
1295	 30.17	0	1379060..1379977	-	305	67459687	xerC	RF_1295	-	site-specific tyrosine recombinase XerC
1296	 26.67	-1	1380148..1380612	+	154	67459688	-	RF_1296	-	phasin family protein
1297	 31.84	0	1380825..1381427	-	200	67459689	-	RF_1297	-	phospholipase D (PLD) superfamily protein
1298	 32.02	0	1381573..1383324	-	583	67459690	phaC	RF_1298	-	Poly(3-hydroxyalkanoate) synthetase
1299	 36.51	+1	1383649..1385127	-	492	67459691	ubiD	RF_1299	-	UbiD family decarboxylase
1300	 28.57	0	1385269..1386843	-	524	67459692	surA	RF_1300	-	parvulin-like peptidyl-prolyl isomerase
1301	 38.99	+1	1387254..1387571	-	105	67459693	-	RF_1301	-	Outer memberane protein rOmpA
1302	 40.88	+2	1387513..1388082	-	189	67459694	-	RF_1302	-	Outer memberane protein rOmpA
1303	 41.18	+2	1388526..1389035	+	169	67459695	-	RF_1303	-	hypothetical protein
1304	 37.13	+1	1389066..1389986	-	306	67459696	-	RF_1304	-	Outer memberane protein rOmpA
1305	 40.50	+2	1390010..1391782	-	590	67459697	-	RF_1305	-	Outer memberane protein rOmpA
1306	 32.11	0	1392427..1393569	-	380	67459698	-	RF_1306	-	ankyrin repeat-containing protein
1307	 38.43	+1	1393984..1396221	-	745	67459699	ftsK	RF_1307	-	cell division protein FtsK-like protein
1308	 34.97	0	1396264..1397238	-	324	67459700	fic	RF_1308	-	Fic
1309	 36.67	+1	1397362..1398141	+	259	67459701	map	RF_1309	-	methionine aminopeptidase
1310	 30.13	0	1398522..1398989	+	155	67459702	radC	RF_1310	-	DNA repair protein RadC
1311	 32.11	0	1399093..1400076	+	327	67459703	mraY2	RF_1311	-	undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
1312	 29.63	0	1400073..1400396	+	107	67459704	-	RF_1312	-	hypothetical protein
1313	 34.14	0	1400827..1401696	-	289	67459705	-	RF_1313	-	hypothetical protein
1314	 34.50	0	1401994..1402677	-	227	67459706	-	RF_1314	-	putative outer surface protein
1315	 32.42	0	1402802..1403131	-	109	67459707	fdxA	RF_1315	-	ferredoxin
1316	 29.87	0	1403162..1403479	-	105	67459708	-	RF_1316	-	transcriptional regulator
1317	 27.10	-1	1403492..1403812	-	106	67459709	-	RF_1317	-	hypothetical protein
1318	 31.89	0	1403935..1404627	-	230	67459710	ccmC	RF_1318	-	Heme exporter protein C
1319	 31.87	0	1404844..1405323	-	159	67459711	-	RF_1319	-	cytosine deaminase
1320	 30.84	0	1405304..1406224	-	306	67459712	-	RF_1320	-	cation diffusion facilitator family transporter
1321	 44.17	+2	1406412..1406891	+	159	67459713	omp	RF_1321	-	17 kDa surface antigen precursor
1322	 34.41	0	1407055..1407519	+	154	67459714	-	RF_1322	-	hypothetical protein
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.