IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1175	 27.74	-1	1246110..1246556	-	148	67459567	-	RF_1175	-	TPR repeat-containing protein
1176	 32.60	0	1246596..1247273	-	225	67459568	rnc	RF_1176	-	ribonuclease III
1177	 31.84	0	1247273..1248073	-	266	67459569	lepB	RF_1177	-	Signal peptidase I
1178	 42.00	+2	1248208..1249476	-	422	67459570	nuoF	RF_1178	-	NADH dehydrogenase I subunit F
1179	 33.55	0	1249615..1250541	-	308	67459571	secF	RF_1179	-	preprotein translocase subunit SecF
1180	 28.69	0	1250739..1250975	+	78	67459572	-	RF_1180	-	hypothetical protein
1181	 31.28	0	1251058..1251300	-	80	67459573	-	RF_1181	-	transposase
1182	 33.54	0	1251375..1252328	-	317	67459574	-	RF_1182	-	transposase
1183	 29.26	0	1252388..1252951	-	187	67459575	-	RF_1183	-	(di)nucleoside polyphosphate hydrolase
1184	 33.33	0	1253135..1253398	+	87	67459576	-	RF_1184	-	hypothetical protein
1185	 31.44	0	1253451..1254350	-	299	67459577	tlyC	RF_1185	-	hemolysin C
1186	 25.79	-1	1254367..1254870	-	167	67459578	-	RF_1186	-	putative metalloprotease
1187	 38.40	+1	1255189..1256235	-	348	67459579	lipA	RF_1187	-	lipoyl synthase
1188	 37.91	+1	1256232..1257497	-	421	67459580	glyA	RF_1188	-	serine hydroxymethyltransferase
1189	 37.35	+1	1257757..1258404	-	215	67459581	-	RF_1189	-	Serine esterase
1190	 32.38	0	1258573..1258887	-	104	67459582	grxC2	RF_1190	-	glutaredoxin-like protein grla
1191	 32.40	0	1258940..1259581	+	213	67459583	nth	RF_1191	-	endonuclease III
1192	 31.76	0	1259554..1260507	-	317	67459584	-	RF_1192	-	hypothetical protein
1193	 24.17	-2	1260555..1260947	-	130	67459585	-	RF_1193	-	hypothetical protein
1194	 30.71	0	1261415..1262254	-	279	67459586	-	RF_1194	-	hypothetical protein
1195	 31.90	0	1262279..1263397	+	372	67459587	-	RF_1195	-	ABC-type transport systems periplasmic component
1196	 30.30	0	1263534..1263698	-	54	67459588	tatA	RF_1196	-	twin argininte translocase protein A
1197	 28.81	0	1263776..1264372	+	198	67459589	pgpA	RF_1197	-	phosphatidylglycerophosphatase A
1198	 30.82	0	1264448..1264765	+	105	67459590	rplU	RF_1198	-	50S ribosomal protein L21
1199	 39.85	+2	1264790..1265050	+	86	67459591	rpmA	RF_1199	-	50S ribosomal protein L27
1200	 30.02	0	1265565..1266770	+	401	67459592	lysC	RF_1200	-	aspartate kinase
1201	 31.92	0	1267188..1267682	+	164	67459593	-	RF_1201	-	hypothetical protein
1202	 31.63	0	1267691..1268101	+	136	67459594	-	RF_1202	-	hypothetical protein
1203	 30.60	0	1268101..1268613	+	170	67459595	-	RF_1203	-	hypothetical protein
1204	 33.33	0	1268717..1269670	+	317	67459596	-	RF_1204	-	transposase
1205	 31.28	0	1269745..1269987	+	80	67459597	-	RF_1205	-	transposase
1206	 27.39	-1	1270048..1270434	-	128	67459598	-	RF_1206	-	PilT domain-containing protein
1207	 28.67	0	1270422..1270700	-	92	67459599	-	RF_1207	-	transcriptional regulator
1208	 33.33	0	1270770..1272041	-	423	67459600	proP5	RF_1208	-	proline/betaine transporter
1209	 38.21	+1	1272264..1272386	-	40	67459601	-	RF_1209	-	hypothetical protein
1210	 32.39	0	1272364..1272681	-	105	67459602	-	RF_1210	-	hypothetical protein
1211	 22.06	-2	1272684..1272887	-	67	67459603	-	RF_1211	-	hypothetical protein
1212	 28.77	0	1273032..1273250	-	72	67459604	-	RF_1212	-	hypothetical protein
1213	 30.70	0	1273254..1278038	-	1594	67459605	-	RF_1213	-	NAD-specific glutamate dehydrogenase
1214	 34.10	0	1278102..1279544	+	480	67459606	trmE	RF_1214	-	tRNA modification GTPase TrmE
1215	 30.85	0	1279769..1281418	+	549	67459607	-	RF_1215	-	hypothetical protein
1216	 31.91	0	1282327..1282608	+	93	67459608	-	RF_1216	-	hypothetical protein
1217	 34.61	0	1282820..1283524	-	234	67459609	-	RF_1217	-	hypothetical protein
1218	 36.97	+1	1283490..1283819	-	109	67459610	-	RF_1218	-	hypothetical protein
1219	 28.87	0	1283945..1284280	-	111	67459611	-	RF_1219	-	multidrug ABC transporter
1220	 29.82	0	1284663..1285829	-	388	67459612	-	RF_1220	-	hypothetical protein
1221	 38.66	+1	1285898..1286929	+	343	67459613	recA	RF_1221	-	recombinase A
1222	 35.26	0	1286922..1287647	+	241	67459614	fabG	RF_1222	-	3-ketoacyl-(acyl-carrier-protein) reductase
1223	 32.11	0	1287813..1288058	+	81	162022118	acpP	RF_1223	-	acyl carrier protein
1224	 40.28	+2	1288094..1289374	+	426	67459616	fabF	RF_1224	-	3-oxoacyl-(acyl carrier protein) synthase II
1225	 31.22	0	1289523..1291364	+	613	67459617	uup	RF_1225	-	ABC transporter ATP-binding protein Uup
1226	 27.96	-1	1291445..1292542	+	365	67459618	-	RF_1226	-	hypothetical protein
1227	 30.35	0	1292823..1293425	-	200	67459619	-	RF_1227	-	ATPase
1228	 28.05	-1	1293674..1293976	-	100	67459620	-	RF_1228	-	ATPase
1229	 31.78	0	1294192..1294770	-	192	67459621	gmk	RF_1229	-	guanylate kinase
1230	 29.66	0	1294907..1295233	-	108	67459622	-	RF_1230	-	hypothetical protein
1231	 28.93	0	1295748..1296587	-	279	67459623	mreC	RF_1231	-	rod shape-determining protein MreC
1232	 39.96	+2	1296590..1297630	-	346	67459624	mreB	RF_1232	-	rod shape-determining protein MreB
1233	 22.77	-2	1297841..1298929	-	362	67459625	-	RF_1233	-	permease
1234	 36.31	+1	1299521..1299991	-	156	67459626	pal	RF_1234	-	peptidoglycan-associated lipoprotein precursor
1235	 37.63	+1	1300334..1301287	-	317	67459627	fabH	RF_1235	-	3-oxoacyl-(acyl carrier protein) synthase III
1236	 36.32	+1	1301301..1301501	-	66	67459628	rpmF	RF_1236	-	50S ribosomal protein L32
1237	 31.22	0	1301597..1302070	+	157	67459629	-	RF_1237	-	hypothetical protein
1238	 35.53	0	1302255..1303166	+	303	67459630	ftsY	RF_1238	-	Signal recognition particle-docking protein FtsY
1239	 34.45	0	1303312..1306080	+	922	67459631	polA	RF_1239	-	DNA polymerase I
1240	 27.49	-1	1306384..1306725	+	113	67459632	-	RF_1240	-	HicB family protein
1241	 38.77	+1	1306766..1307317	+	183	67459633	-	RF_1241	-	S-adenosylmethionine synthetase MetK
1242	 41.07	+2	1307508..1307882	+	124	67459634	-	RF_1242	-	S-adenosylmethionine synthetase MetK
1243	 29.00	0	1308002..1310332	+	776	67459635	-	RF_1243	-	hypothetical protein
1244	 35.57	0	1310602..1314225	-	1207	67459636	dnaE	RF_1244	-	DNA polymerase III subunit alpha
1245	 31.33	0	1314369..1315715	-	448	67459637	udg	RF_1245	-	UDP-glucose 6-dehydrogenase
1246	 26.97	-1	1315965..1318478	+	837	67459638	-	RF_1246	-	hypothetical protein
1247	 31.83	0	1318488..1319753	+	421	67459639	ampG3	RF_1247	-	AmpG protein
1248	 28.44	0	1319820..1320575	+	251	67459640	tatC	RF_1248	-	Sec-independent protein translocase protein TatC
1249	 33.80	0	1320553..1321830	+	425	67459641	serS	RF_1249	-	seryl-tRNA synthetase
1250	 27.50	-1	1322075..1324507	+	810	67459642	virB4_2	RF_1250	-	type IV secretion/conjugal transfer ATPase
1251	 35.70	0	1324896..1328396	+	1166	67459643	-	RF_1251	-	hypothetical protein
1252	 26.49	-1	1328532..1329305	+	257	67459644	terC	RF_1252	-	tellurium resistance protein TerC
1253	 31.65	0	1329349..1330062	+	237	67459645	-	RF_1253	-	hypothetical protein
1254	 33.20	0	1330230..1331759	+	509	67459646	-	RF_1254	-	hypothetical protein
1255	 29.45	0	1332023..1332640	+	205	67459647	nuoJ	RF_1255	-	NADH dehydrogenase subunit J
1256	 29.52	0	1332633..1332947	+	104	162022117	nuoK	RF_1256	-	NADH dehydrogenase subunit K
1257	 35.19	0	1332949..1334886	+	645	67459649	nuoL1	RF_1257	-	NADH dehydrogenase subunit L
1258	 33.06	0	1335037..1336518	+	493	67459650	nuoM	RF_1258	-	NADH dehydrogenase subunit M
1259	 33.88	0	1336540..1337265	+	241	67459651	ccmA	RF_1259	-	cytochrome c biogenesis protein CcmA
1260	 39.17	+1	1337687..1338166	-	159	67459652	nuoI	RF_1260	-	NADH dehydrogenase subunit I
1261	 36.67	+1	1338352..1339371	-	339	67459653	nuoH	RF_1261	-	NADH dehydrogenase subunit H
1262	 37.50	+1	1339540..1341555	-	671	67459654	nuoG	RF_1262	-	NADH dehydrogenase subunit G
1263	 33.85	0	1341558..1341947	-	129	67459655	-	RF_1263	-	hypothetical protein
1264	 36.41	+1	1342062..1344698	-	878	67459656	acnA	RF_1264	-	aconitate hydratase
1265	 35.10	0	1344920..1345258	-	112	67459657	atpC	RF_1265	-	F0F1 ATP synthase subunit epsilon
1266	 41.00	+2	1345390..1346916	-	508	67459658	atpD	RF_1266	-	F0F1 ATP synthase subunit beta
1267	 28.37	0	1346945..1347811	-	288	67459659	atpG	RF_1267	-	F0F1 ATP synthase subunit gamma
1268	 38.42	+1	1347991..1349523	-	510	67459660	atpA	RF_1268	-	F0F1 ATP synthase subunit alpha
1269	 24.86	-1	1349711..1350265	-	184	67459661	atpH	RF_1269	-	F0F1 ATP synthase subunit delta
1270	 36.45	+1	1350262..1351641	-	459	67459662	lpdA1	RF_1270	-	dihydrolipoamide dehydrogenase
1271	 33.33	0	1351783..1352211	-	142	67459663	-	RF_1271	-	Strees induced DNA-binding protein
1272	 30.11	0	1352283..1352561	-	92	67459664	-	RF_1272	-	cytotoxic translational repressor of toxin-antitoxin system RelE
1273	 32.88	0	1352552..1352770	-	72	67459665	-	RF_1273	-	hypothetical protein
1274	 32.97	0	1352962..1354068	+	368	67459666	-	RF_1274	-	hypothetical protein
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.