IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1104	 31.84	0	1172143..1173819	+	558	67459496	-	RF_1104	-	prolyl endopeptidase precursor
1105	 33.33	0	1173871..1174299	+	142	67459497	-	RF_1105	-	prolyl endopeptidase precursor
1106	 34.77	0	1174750..1176213	-	487	67459498	ffh	RF_1106	-	Signal recognition particle protein
1107	 26.42	-1	1176477..1177271	-	264	67459499	holB	RF_1107	-	DNA polymerase III subunit delta'
1108	 32.13	0	1177570..1177902	-	110	67459500	hupA	RF_1108	-	DNA-binding protein HU
1109	 32.71	0	1178392..1181418	+	1008	67459501	acrF	RF_1109	-	hydrophobe/amphiphile efflux-1 HAE1 family protein
1110	 29.11	0	1181505..1181741	+	78	67459502	-	RF_1110	-	hypothetical protein
1111	 32.92	0	1181869..1182591	-	240	67459503	-	RF_1111	-	hypothetical protein
1112	 38.82	+1	1182644..1182880	+	78	67459504	-	RF_1112	-	hypothetical protein
1113	 30.84	0	1182880..1183320	+	146	67459505	-	RF_1113	-	hypothetical protein
1114	 32.13	0	1183379..1183627	-	82	67459506	-	RF_1114	-	hypothetical protein
1115	 32.93	0	1183735..1183980	-	81	67459507	-	RF_1115	-	hypothetical protein
1116	 28.74	0	1184069..1184329	-	86	67459508	-	RF_1116	-	hypothetical protein
1117	 29.35	0	1184384..1185562	+	392	67459509	-	RF_1117	-	hypothetical protein
1118	 33.63	0	1185600..1186283	-	227	67459510	rrmJ	RF_1118	-	ribosomal RNA large subunit methyltransferase J
1119	 28.66	0	1186280..1186750	-	156	67459511	nusB	RF_1119	-	transcription antitermination protein NusB
1120	 32.96	0	1187015..1188088	+	357	67459512	-	RF_1120	-	membrane-associated zinc metalloprotease
1121	 32.68	0	1188336..1190642	+	768	67459513	omp1	RF_1121	-	Outer membrane protein omp1
1122	 26.02	-1	1191226..1191963	+	245	67459514	-	RF_1122	-	hypothetical protein
1123	 30.88	0	1192087..1192290	-	67	67459515	-	RF_1123	-	hypothetical protein
1124	 34.10	0	1192534..1194093	+	519	67459516	emrB	RF_1124	-	multidrug resistance protein B
1125	 29.63	0	1194077..1194400	+	107	67459517	mnhE	RF_1125	-	putative monovalent cation/H+ antiporter subunit E
1126	 37.17	+1	1194409..1195137	+	242	67459518	pyrH	RF_1126	-	uridylate kinase
1127	 36.90	+1	1195454..1196014	+	186	67459519	frr	RF_1127	-	ribosome recycling factor
1128	 28.38	0	1196200..1196502	+	100	67459520	gatC	RF_1128	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1129	 38.39	+1	1196505..1197986	+	493	67459521	gatA	RF_1129	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1130	 35.54	0	1197989..1199440	+	483	67459522	gatB	RF_1130	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1131	 31.27	0	1199624..1200349	+	241	67459523	yqiX	RF_1131	-	amino acid ABC transporter substrate-binding protein
1132	 28.99	0	1200334..1200816	+	160	67459524	-	RF_1132	-	hypothetical protein
1133	 31.03	0	1200824..1201561	+	245	67459525	dapB	RF_1133	-	dihydrodipicolinate reductase
1134	 33.76	0	1201607..1202317	+	236	67459526	-	RF_1134	-	integral membrane protein
1135	 34.88	0	1202790..1203953	+	387	67459527	-	RF_1135	-	hypothetical protein
1136	 29.68	0	1204059..1204907	+	282	67459528	-	RF_1136	-	hypothetical protein
1137	 32.10	0	1205230..1206363	+	377	67459529	-	RF_1137	-	penicillin acylase
1138	 37.44	+1	1206421..1208223	-	600	67459530	aspS	RF_1138	-	aspartyl-tRNA synthetase
1139	 33.33	0	1208405..1209358	+	317	67459531	-	RF_1139	-	transposase
1140	 30.86	0	1209433..1209675	+	80	67459532	-	RF_1140	-	transposase
1141	 28.08	-1	1209698..1210078	-	126	67459533	-	RF_1141	-	hypothetical protein
1142	 34.08	0	1210164..1210964	-	266	67459534	-	RF_1142	-	chromosome partitioning protein
1143	 37.51	+1	1211145..1212653	-	502	67459535	pepA	RF_1143	-	leucyl aminopeptidase
1144	 31.96	0	1212811..1213974	+	387	67459536	-	RF_1144	-	hypothetical protein
1145	 36.71	+1	1214318..1218436	-	1372	67459537	rpoC	RF_1145	-	DNA-directed RNA polymerase subunit beta'
1146	 35.13	0	1218639..1222760	-	1373	67459538	rpoB	RF_1146	-	DNA-directed RNA polymerase subunit beta
1147	 38.10	+1	1223704..1224081	-	125	67459539	rplL	RF_1147	-	50S ribosomal protein L7/L12
1148	 34.12	0	1224276..1224785	-	169	67459540	rplJ	RF_1148	-	50S ribosomal protein L10
1149	 33.06	0	1224896..1225615	-	239	67459541	rplA	RF_1149	-	50S ribosomal protein L1
1150	 33.33	0	1225621..1226058	-	145	67459542	rplK	RF_1150	-	50S ribosomal protein L11
1151	 31.95	0	1226264..1226842	-	192	67459543	nusG	RF_1151	-	transcription antitermination protein NusG
1152	 28.96	0	1226858..1227154	-	98	67459544	secE	RF_1152	-	preprotein translocase subunit SecE
1153	 36.62	+1	1227493..1229592	-	699	162022120	fusA	RF_1153	-	elongation factor G
1154	 35.00	0	1229609..1230088	-	159	67459546	rpsG	RF_1154	-	30S ribosomal protein S7
1155	 40.00	+2	1230115..1230504	-	129	162022119	rpsL	RF_1155	-	30S ribosomal protein S12
1156	 30.14	0	1230665..1231321	-	218	67459548	yqiY	RF_1156	-	amino acid ABC transporter permease
1157	 32.22	0	1231547..1231816	-	89	67459549	-	RF_1157	-	hypothetical protein
1158	 34.90	0	1231926..1232372	-	148	67459550	-	RF_1158	-	hypothetical protein
1159	 42.49	+2	1232807..1234597	-	596	67459551	sdhA	RF_1159	-	succinate dehydrogenase flavoprotein subunit
1160	 26.81	-1	1234751..1234888	-	45	67459552	-	RF_1160	-	hypothetical protein
1161	 30.85	0	1234889..1235251	-	120	67459553	sdhD	RF_1161	-	succinate dehydrogenase hydrophobic membrane anchor protein
1162	 30.14	0	1235241..1236116	-	291	67459554	-	RF_1162	-	nucleotidyltransferase/HEPN domain-containing protein
1163	 33.87	0	1236134..1236508	-	124	67459555	sdhC	RF_1163	-	succinate dehydrogenase cytochrome b-556 subunit
1164	 35.00	0	1236685..1237224	-	179	67459556	-	RF_1164	-	hypothetical protein
1165	 27.64	-1	1237290..1237412	-	40	67459557	-	RF_1165	-	sulfurtransferase
1166	 33.01	0	1237553..1239094	-	513	67459558	htrA	RF_1166	-	periplasmic serine protease
1167	 33.33	0	1239096..1239956	-	286	67459559	hflC2	RF_1167	-	membrane protease subunit stomatin/prohibitin-like protein
1168	 33.62	0	1240142..1241182	-	346	67459560	hflK	RF_1168	-	protease activity modulator HflK
1169	 31.87	0	1241282..1242238	+	318	67459561	mrp	RF_1169	-	Mrp protein
1170	 34.43	0	1242238..1243422	+	394	67459562	-	RF_1170	-	hypothetical protein
1171	 28.94	0	1243410..1243682	+	90	67459563	-	RF_1171	-	nucleotidyltransferase substrate binding protein
1172	 35.20	0	1243907..1244602	-	231	67459564	-	RF_1172	-	tRNA/rRNA methyltransferase
1173	 37.15	+1	1244603..1245073	-	156	67459565	ruvC	RF_1173	-	Holliday junction resolvase
1174	 33.56	0	1245203..1246084	-	293	67459566	era	RF_1174	-	GTP-binding protein Era
1175	 27.74	-1	1246110..1246556	-	148	67459567	-	RF_1175	-	TPR repeat-containing protein
1176	 32.60	0	1246596..1247273	-	225	67459568	rnc	RF_1176	-	ribonuclease III
1177	 31.84	0	1247273..1248073	-	266	67459569	lepB	RF_1177	-	Signal peptidase I
1178	 42.00	+2	1248208..1249476	-	422	67459570	nuoF	RF_1178	-	NADH dehydrogenase I subunit F
1179	 33.55	0	1249615..1250541	-	308	67459571	secF	RF_1179	-	preprotein translocase subunit SecF
1180	 28.69	0	1250739..1250975	+	78	67459572	-	RF_1180	-	hypothetical protein
1181	 31.28	0	1251058..1251300	-	80	67459573	-	RF_1181	-	transposase
1182	 33.54	0	1251375..1252328	-	317	67459574	-	RF_1182	-	transposase
1183	 29.26	0	1252388..1252951	-	187	67459575	-	RF_1183	-	(di)nucleoside polyphosphate hydrolase
1184	 33.33	0	1253135..1253398	+	87	67459576	-	RF_1184	-	hypothetical protein
1185	 31.44	0	1253451..1254350	-	299	67459577	tlyC	RF_1185	-	hemolysin C
1186	 25.79	-1	1254367..1254870	-	167	67459578	-	RF_1186	-	putative metalloprotease
1187	 38.40	+1	1255189..1256235	-	348	67459579	lipA	RF_1187	-	lipoyl synthase
1188	 37.91	+1	1256232..1257497	-	421	67459580	glyA	RF_1188	-	serine hydroxymethyltransferase
1189	 37.35	+1	1257757..1258404	-	215	67459581	-	RF_1189	-	Serine esterase
1190	 32.38	0	1258573..1258887	-	104	67459582	grxC2	RF_1190	-	glutaredoxin-like protein grla
1191	 32.40	0	1258940..1259581	+	213	67459583	nth	RF_1191	-	endonuclease III
1192	 31.76	0	1259554..1260507	-	317	67459584	-	RF_1192	-	hypothetical protein
1193	 24.17	-2	1260555..1260947	-	130	67459585	-	RF_1193	-	hypothetical protein
1194	 30.71	0	1261415..1262254	-	279	67459586	-	RF_1194	-	hypothetical protein
1195	 31.90	0	1262279..1263397	+	372	67459587	-	RF_1195	-	ABC-type transport systems periplasmic component
1196	 30.30	0	1263534..1263698	-	54	67459588	tatA	RF_1196	-	twin argininte translocase protein A
1197	 28.81	0	1263776..1264372	+	198	67459589	pgpA	RF_1197	-	phosphatidylglycerophosphatase A
1198	 30.82	0	1264448..1264765	+	105	67459590	rplU	RF_1198	-	50S ribosomal protein L21
1199	 39.85	+2	1264790..1265050	+	86	67459591	rpmA	RF_1199	-	50S ribosomal protein L27
1200	 30.02	0	1265565..1266770	+	401	67459592	lysC	RF_1200	-	aspartate kinase
1201	 31.92	0	1267188..1267682	+	164	67459593	-	RF_1201	-	hypothetical protein
1202	 31.63	0	1267691..1268101	+	136	67459594	-	RF_1202	-	hypothetical protein
1203	 30.60	0	1268101..1268613	+	170	67459595	-	RF_1203	-	hypothetical protein
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.