IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1045	 32.03	0	1105251..1106018	-	255	67459437	pssA	RF_1045	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1046	 34.34	0	1106335..1107030	-	231	67459438	psd	RF_1046	-	phosphatidylserine decarboxylase
1047	 40.88	+2	1107063..1107380	-	105	67459439	-	RF_1047	-	hypothetical protein
1048	 27.44	-1	1107620..1108366	-	248	67459440	suhB	RF_1048	-	extragenic suppressor protein SuhB
1049	 31.22	0	1108556..1109122	-	188	67459441	efp	RF_1049	-	elongation factor P
1050	 31.56	0	1109198..1110550	+	450	67459442	pleD	RF_1050	-	response regulator PleD
1051	 35.39	0	1110575..1111060	+	161	67459443	nudH	RF_1051	-	dinucleoside polyphosphate hydrolase
1052	 28.28	0	1111222..1111755	-	177	67459444	-	RF_1052	-	hypothetical protein
1053	 31.28	0	1112045..1112287	-	80	67459445	-	RF_1053	-	transposase
1054	 34.13	0	1112362..1113114	-	250	67459446	-	RF_1054	-	transposase
1055	 38.52	+1	1113461..1116181	-	906	67459447	gyrA	RF_1055	-	DNA gyrase subunit A
1056	 29.94	0	1117744..1118097	-	117	67459448	-	RF_1056	-	hypothetical protein
1057	 35.16	0	1118141..1119943	-	600	67459449	atm1	RF_1057	-	multidrug resistance protein Atm1
1058	 30.36	0	1119972..1120274	-	100	67459450	-	RF_1058	-	excinuclease ABC subunit C
1059	 34.95	0	1120433..1120741	-	102	67459451	grxC1	RF_1059	-	GrxC family glutaredoxin
1060	 38.37	+1	1120812..1122797	+	661	67459452	uvrB	RF_1060	-	excinuclease ABC subunit B
1061	 33.16	0	1122962..1123543	-	193	67459453	rnhB	RF_1061	-	ribonuclease HII
1062	 28.14	-1	1123754..1124254	+	166	67459454	hscB	RF_1062	-	co-chaperone HscB
1063	 32.34	0	1124245..1126158	+	637	67459455	hscA	RF_1063	-	chaperone protein HscA
1064	 35.10	0	1126223..1126561	+	112	67459456	fdxB	RF_1064	-	ferredoxin
1065	 25.21	-1	1126574..1127644	+	356	67459457	-	RF_1065	-	hypothetical protein
1066	 28.41	0	1127601..1128575	+	324	67459458	imp	RF_1066	-	TRAP-type uncharacterized transport system
1067	 27.74	-1	1128599..1129045	+	148	67459459	uspA	RF_1067	-	universal stress protein UspA
1068	 34.55	0	1129497..1134005	-	1502	67459460	sca8	RF_1068	-	cell surface antigen-like protein Sca8
1069	 34.11	0	1134697..1137021	+	774	67459461	pbpC	RF_1069	-	bifunctional penicillin-binding protein 1C
1070	 28.29	0	1137036..1138919	+	627	67459462	-	RF_1070	-	hypothetical protein
1071	 30.45	0	1139088..1139330	-	80	67459463	-	RF_1071	-	transposase
1072	 33.86	0	1139405..1140157	-	250	67459464	-	RF_1072	-	transposase
1073	 34.79	0	1140508..1141332	-	274	67459465	dapD	RF_1073	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1074	 25.75	-1	1141408..1142040	+	210	67459466	-	RF_1074	-	hypothetical protein
1075	 32.78	0	1142318..1142677	-	119	67459467	trbC	RF_1075	-	VirB2 protein
1076	 33.93	0	1142833..1143669	-	278	67459468	coxC	RF_1076	-	cytochrome c oxidase subunit III
1077	 30.12	0	1144392..1145045	-	217	67459469	coq7	RF_1077	-	ubiquinone biosynthesis protein Coq7
1078	 26.29	-1	1145074..1146039	-	321	67459470	holA	RF_1078	-	DNA polymerase III subunit delta
1079	 29.11	0	1146047..1146520	-	157	67459471	-	RF_1079	-	hypothetical protein
1080	 29.31	0	1146632..1147054	+	140	67459472	-	RF_1080	-	hypothetical protein
1081	 31.94	0	1147207..1147851	-	214	67459473	-	RF_1081	-	ankyrin repeat-containing protein
1082	 28.24	0	1147946..1148338	-	130	67459474	-	RF_1082	-	hypothetical protein
1083	 32.93	0	1148659..1150152	-	497	67459475	-	RF_1083	-	heat shock protease
1084	 38.85	+1	1150216..1152099	+	627	67459476	dnaK	RF_1084	-	molecular chaperone DnaK
1085	 38.80	+1	1152252..1153367	+	371	67459477	dnaJ	RF_1085	-	DnaJ protein
1086	 34.72	0	1153603..1153818	+	71	67459478	chaB	RF_1086	-	cation transport regulator ChaB
1087	 29.07	0	1154205..1154579	+	124	67459479	-	RF_1087	-	ankyrin repeat-containing protein
1088	 35.19	0	1155128..1155883	+	251	67459480	-	RF_1088	-	hypothetical protein
1089	 33.03	0	1156040..1157680	+	546	67459481	recN	RF_1089	-	DNA repair protein RecN
1090	 34.70	0	1157818..1158843	+	341	67459482	-	RF_1090	-	thermostable carboxypeptidase
1091	 31.68	0	1158782..1159327	+	181	67459483	-	RF_1091	-	thermostable carboxypeptidase
1092	 37.36	+1	1159486..1162437	+	983	67459484	kgd	RF_1092	-	alpha-ketoglutarate decarboxylase
1093	 38.06	+1	1162668..1163873	+	401	67459485	sucB	RF_1093	-	dihydrolipoamide acetyltransferase
1094	 33.57	0	1164047..1164463	+	138	67459486	-	RF_1094	-	6-pyruvoyl tetrahydropterin synthase
1095	 32.26	0	1164466..1164930	+	154	67459487	cutA	RF_1095	-	periplasmic divalent cation tolerance protein
1096	 35.17	0	1164971..1166170	+	399	67459488	gltP	RF_1096	-	Na+/H+-dicarboxylate symporters
1097	 27.18	-1	1166444..1167190	+	248	67459489	-	RF_1097	-	hypothetical protein
1098	 31.99	0	1167418..1168161	+	247	67459490	-	RF_1098	-	hypothetical protein
1099	 30.97	0	1168895..1169698	-	267	67459491	-	RF_1099	-	ankyrin repeat-containing protein
1100	 31.70	0	1169695..1170855	-	386	67459492	hemN	RF_1100	-	coproporphyrinogen III oxidase
1101	 30.19	0	1170869..1171027	-	52	67459493	-	RF_1101	-	transposase
1102	 26.80	-1	1171015..1171473	-	152	67459494	-	RF_1102	-	transposase
1103	 28.33	0	1171612..1171911	-	99	67459495	-	RF_1103	-	transposase
1104	 31.84	0	1172143..1173819	+	558	67459496	-	RF_1104	-	prolyl endopeptidase precursor
1105	 33.33	0	1173871..1174299	+	142	67459497	-	RF_1105	-	prolyl endopeptidase precursor
1106	 34.77	0	1174750..1176213	-	487	67459498	ffh	RF_1106	-	Signal recognition particle protein
1107	 26.42	-1	1176477..1177271	-	264	67459499	holB	RF_1107	-	DNA polymerase III subunit delta'
1108	 32.13	0	1177570..1177902	-	110	67459500	hupA	RF_1108	-	DNA-binding protein HU
1109	 32.71	0	1178392..1181418	+	1008	67459501	acrF	RF_1109	-	hydrophobe/amphiphile efflux-1 HAE1 family protein
1110	 29.11	0	1181505..1181741	+	78	67459502	-	RF_1110	-	hypothetical protein
1111	 32.92	0	1181869..1182591	-	240	67459503	-	RF_1111	-	hypothetical protein
1112	 38.82	+1	1182644..1182880	+	78	67459504	-	RF_1112	-	hypothetical protein
1113	 30.84	0	1182880..1183320	+	146	67459505	-	RF_1113	-	hypothetical protein
1114	 32.13	0	1183379..1183627	-	82	67459506	-	RF_1114	-	hypothetical protein
1115	 32.93	0	1183735..1183980	-	81	67459507	-	RF_1115	-	hypothetical protein
1116	 28.74	0	1184069..1184329	-	86	67459508	-	RF_1116	-	hypothetical protein
1117	 29.35	0	1184384..1185562	+	392	67459509	-	RF_1117	-	hypothetical protein
1118	 33.63	0	1185600..1186283	-	227	67459510	rrmJ	RF_1118	-	ribosomal RNA large subunit methyltransferase J
1119	 28.66	0	1186280..1186750	-	156	67459511	nusB	RF_1119	-	transcription antitermination protein NusB
1120	 32.96	0	1187015..1188088	+	357	67459512	-	RF_1120	-	membrane-associated zinc metalloprotease
1121	 32.68	0	1188336..1190642	+	768	67459513	omp1	RF_1121	-	Outer membrane protein omp1
1122	 26.02	-1	1191226..1191963	+	245	67459514	-	RF_1122	-	hypothetical protein
1123	 30.88	0	1192087..1192290	-	67	67459515	-	RF_1123	-	hypothetical protein
1124	 34.10	0	1192534..1194093	+	519	67459516	emrB	RF_1124	-	multidrug resistance protein B
1125	 29.63	0	1194077..1194400	+	107	67459517	mnhE	RF_1125	-	putative monovalent cation/H+ antiporter subunit E
1126	 37.17	+1	1194409..1195137	+	242	67459518	pyrH	RF_1126	-	uridylate kinase
1127	 36.90	+1	1195454..1196014	+	186	67459519	frr	RF_1127	-	ribosome recycling factor
1128	 28.38	0	1196200..1196502	+	100	67459520	gatC	RF_1128	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1129	 38.39	+1	1196505..1197986	+	493	67459521	gatA	RF_1129	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1130	 35.54	0	1197989..1199440	+	483	67459522	gatB	RF_1130	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1131	 31.27	0	1199624..1200349	+	241	67459523	yqiX	RF_1131	-	amino acid ABC transporter substrate-binding protein
1132	 28.99	0	1200334..1200816	+	160	67459524	-	RF_1132	-	hypothetical protein
1133	 31.03	0	1200824..1201561	+	245	67459525	dapB	RF_1133	-	dihydrodipicolinate reductase
1134	 33.76	0	1201607..1202317	+	236	67459526	-	RF_1134	-	integral membrane protein
1135	 34.88	0	1202790..1203953	+	387	67459527	-	RF_1135	-	hypothetical protein
1136	 29.68	0	1204059..1204907	+	282	67459528	-	RF_1136	-	hypothetical protein
1137	 32.10	0	1205230..1206363	+	377	67459529	-	RF_1137	-	penicillin acylase
1138	 37.44	+1	1206421..1208223	-	600	67459530	aspS	RF_1138	-	aspartyl-tRNA synthetase
1139	 33.33	0	1208405..1209358	+	317	67459531	-	RF_1139	-	transposase
1140	 30.86	0	1209433..1209675	+	80	67459532	-	RF_1140	-	transposase
1141	 28.08	-1	1209698..1210078	-	126	67459533	-	RF_1141	-	hypothetical protein
1142	 34.08	0	1210164..1210964	-	266	67459534	-	RF_1142	-	chromosome partitioning protein
1143	 37.51	+1	1211145..1212653	-	502	67459535	pepA	RF_1143	-	leucyl aminopeptidase
1144	 31.96	0	1212811..1213974	+	387	67459536	-	RF_1144	-	hypothetical protein
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.