IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
999	 30.45	0	1060948..1061190	+	80	67459391	-	RF_0999	-	transposase
1000	 39.05	+1	1061492..1063294	-	600	67459392	lepA	RF_1000	-	GTP-binding protein LepA
1001	 39.44	+1	1063533..1064640	+	368	67459393	prfB	RF_1001	-	peptide chain release factor 2
1002	 28.42	0	1064650..1065666	+	338	67459394	-	RF_1002	-	hypothetical protein
1003	 29.20	0	1065752..1066597	+	281	67459395	-	RF_1003	-	hypothetical protein
1004	 30.32	0	1066682..1067146	-	154	67459396	hspC2	RF_1004	-	small heat shock protein
1005	 26.98	-1	1067178..1067618	-	146	67459397	hspC1	RF_1005	-	small heat shock protein
1006	 32.67	0	1067740..1068192	-	150	67459398	-	RF_1006	-	hypothetical protein
1007	 40.48	+2	1068415..1069170	-	251	67459399	fbcH	RF_1007	-	cytochrome c1, heme protein precursor
1008	 29.43	0	1069305..1069739	-	144	67459400	-	RF_1008	-	endo/excinuclease amino terminal domain-containing protein
1009	 38.51	+1	1069787..1070983	-	398	67459401	petB	RF_1009	-	cytochrome b
1010	 43.07	+2	1070990..1071523	-	177	67459402	petA	RF_1010	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1011	 32.68	0	1071545..1072003	-	152	67459403	-	RF_1011	-	hypothetical protein
1012	 24.54	-1	1072080..1072727	-	215	67459404	ccmB	RF_1012	-	Heme exporter protein B
1013	 31.10	0	1072720..1073748	-	342	67459405	mnhB	RF_1013	-	putative monovalent cation/H+ antiporter subunit B
1014	 34.42	0	1073813..1074181	-	122	67459406	-	RF_1014	-	putative monovalent cation/H+ antiporter subunit G
1015	 35.84	0	1074245..1075720	-	491	67459407	icd	RF_1015	-	isocitrate dehydrogenase
1016	 30.78	0	1075863..1076411	-	182	67459408	-	RF_1016	-	hypothetical protein
1017	 29.41	0	1076572..1077183	-	203	67459409	-	RF_1017	-	hypothetical protein
1018	 41.75	+2	1077518..1079347	+	609	67459410	typA	RF_1018	-	GTP-binding protein TypA
1019	 38.63	+1	1079711..1080691	-	326	67459411	pdhB	RF_1019	-	pyruvate dehydrogenase subunit beta
1020	 37.61	+1	1080826..1081806	-	326	67459412	pdhA	RF_1020	-	pyruvate dehydrogenase e1 component, alpha subunit precursor
1021	 32.96	0	1081982..1082785	-	267	67459413	xth1	RF_1021	-	exodeoxyribonuclease III
1022	 29.20	0	1082799..1083983	-	394	67459414	pbpE	RF_1022	-	penicillin-binding protein 4*
1023	 28.98	0	1083988..1084905	-	305	67459415	rluA1	RF_1023	-	ribosomal large subunit pseudouridine synthase
1024	 30.77	0	1085135..1086148	-	337	67459416	coxW	RF_1024	-	cytochrome c oxidase assembly protein
1025	 31.76	0	1086391..1088427	-	678	67459417	rne	RF_1025	-	ribonuclease E
1026	 18.66	-2	1088854..1089255	+	133	67459418	-	RF_1026	-	hypothetical protein
1027	 27.91	-1	1089264..1090001	+	245	67459419	-	RF_1027	-	hypothetical protein
1028	 32.99	0	1090184..1091050	+	288	67459420	lpxC	RF_1028	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1029	 26.83	-1	1091059..1092135	-	358	67459421	-	RF_1029	-	hypothetical protein
1030	 37.50	+1	1092248..1092775	+	175	67459422	cycM	RF_1030	-	cytochrome c
1031	 32.91	0	1092759..1093232	+	157	67459423	-	RF_1031	-	hypothetical protein
1032	 27.63	-1	1093465..1095183	+	572	67459424	-	RF_1032	-	hypothetical protein
1033	 30.91	0	1095442..1096677	-	411	67459425	ftsA	RF_1033	-	cell division protein FtsA
1034	 28.61	0	1096805..1097608	-	267	67459426	ftsQ	RF_1034	-	cell division protein FtsQ
1035	 34.68	0	1097605..1098570	-	321	67459427	ddl	RF_1035	-	D-alanine--D-alanine ligase
1036	 33.67	0	1098696..1099583	-	295	67459428	murB	RF_1036	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1037	 33.26	0	1099926..1101362	-	478	67459429	murC	RF_1037	-	UDP-N-acetylmuramate--L-alanine ligase
1038	 27.86	-1	1101532..1102755	-	407	67459430	-	RF_1038	-	hypothetical protein
1039	 32.92	0	1102810..1103052	+	80	67459431	bolA1	RF_1039	-	morphology/transcriptional regulatory  protein BolA
1040	 28.92	0	1103049..1103252	+	67	67459432	-	RF_1040	-	hypothetical protein
1041	 30.69	0	1103257..1103445	-	62	67459433	-	RF_1041	-	hypothetical protein
1042	 33.01	0	1103414..1103719	-	101	67459434	-	RF_1042	-	hypothetical protein
1043	 29.29	0	1103692..1104087	-	131	67459435	-	RF_1043	-	hypothetical protein
1044	 31.93	0	1104190..1105257	-	355	67459436	emrA	RF_1044	-	multidrug resistance protein A
1045	 32.03	0	1105251..1106018	-	255	67459437	pssA	RF_1045	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1046	 34.34	0	1106335..1107030	-	231	67459438	psd	RF_1046	-	phosphatidylserine decarboxylase
1047	 40.88	+2	1107063..1107380	-	105	67459439	-	RF_1047	-	hypothetical protein
1048	 27.44	-1	1107620..1108366	-	248	67459440	suhB	RF_1048	-	extragenic suppressor protein SuhB
1049	 31.22	0	1108556..1109122	-	188	67459441	efp	RF_1049	-	elongation factor P
1050	 31.56	0	1109198..1110550	+	450	67459442	pleD	RF_1050	-	response regulator PleD
1051	 35.39	0	1110575..1111060	+	161	67459443	nudH	RF_1051	-	dinucleoside polyphosphate hydrolase
1052	 28.28	0	1111222..1111755	-	177	67459444	-	RF_1052	-	hypothetical protein
1053	 31.28	0	1112045..1112287	-	80	67459445	-	RF_1053	-	transposase
1054	 34.13	0	1112362..1113114	-	250	67459446	-	RF_1054	-	transposase
1055	 38.52	+1	1113461..1116181	-	906	67459447	gyrA	RF_1055	-	DNA gyrase subunit A
1056	 29.94	0	1117744..1118097	-	117	67459448	-	RF_1056	-	hypothetical protein
1057	 35.16	0	1118141..1119943	-	600	67459449	atm1	RF_1057	-	multidrug resistance protein Atm1
1058	 30.36	0	1119972..1120274	-	100	67459450	-	RF_1058	-	excinuclease ABC subunit C
1059	 34.95	0	1120433..1120741	-	102	67459451	grxC1	RF_1059	-	GrxC family glutaredoxin
1060	 38.37	+1	1120812..1122797	+	661	67459452	uvrB	RF_1060	-	excinuclease ABC subunit B
1061	 33.16	0	1122962..1123543	-	193	67459453	rnhB	RF_1061	-	ribonuclease HII
1062	 28.14	-1	1123754..1124254	+	166	67459454	hscB	RF_1062	-	co-chaperone HscB
1063	 32.34	0	1124245..1126158	+	637	67459455	hscA	RF_1063	-	chaperone protein HscA
1064	 35.10	0	1126223..1126561	+	112	67459456	fdxB	RF_1064	-	ferredoxin
1065	 25.21	-1	1126574..1127644	+	356	67459457	-	RF_1065	-	hypothetical protein
1066	 28.41	0	1127601..1128575	+	324	67459458	imp	RF_1066	-	TRAP-type uncharacterized transport system
1067	 27.74	-1	1128599..1129045	+	148	67459459	uspA	RF_1067	-	universal stress protein UspA
1068	 34.55	0	1129497..1134005	-	1502	67459460	sca8	RF_1068	-	cell surface antigen-like protein Sca8
1069	 34.11	0	1134697..1137021	+	774	67459461	pbpC	RF_1069	-	bifunctional penicillin-binding protein 1C
1070	 28.29	0	1137036..1138919	+	627	67459462	-	RF_1070	-	hypothetical protein
1071	 30.45	0	1139088..1139330	-	80	67459463	-	RF_1071	-	transposase
1072	 33.86	0	1139405..1140157	-	250	67459464	-	RF_1072	-	transposase
1073	 34.79	0	1140508..1141332	-	274	67459465	dapD	RF_1073	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1074	 25.75	-1	1141408..1142040	+	210	67459466	-	RF_1074	-	hypothetical protein
1075	 32.78	0	1142318..1142677	-	119	67459467	trbC	RF_1075	-	VirB2 protein
1076	 33.93	0	1142833..1143669	-	278	67459468	coxC	RF_1076	-	cytochrome c oxidase subunit III
1077	 30.12	0	1144392..1145045	-	217	67459469	coq7	RF_1077	-	ubiquinone biosynthesis protein Coq7
1078	 26.29	-1	1145074..1146039	-	321	67459470	holA	RF_1078	-	DNA polymerase III subunit delta
1079	 29.11	0	1146047..1146520	-	157	67459471	-	RF_1079	-	hypothetical protein
1080	 29.31	0	1146632..1147054	+	140	67459472	-	RF_1080	-	hypothetical protein
1081	 31.94	0	1147207..1147851	-	214	67459473	-	RF_1081	-	ankyrin repeat-containing protein
1082	 28.24	0	1147946..1148338	-	130	67459474	-	RF_1082	-	hypothetical protein
1083	 32.93	0	1148659..1150152	-	497	67459475	-	RF_1083	-	heat shock protease
1084	 38.85	+1	1150216..1152099	+	627	67459476	dnaK	RF_1084	-	molecular chaperone DnaK
1085	 38.80	+1	1152252..1153367	+	371	67459477	dnaJ	RF_1085	-	DnaJ protein
1086	 34.72	0	1153603..1153818	+	71	67459478	chaB	RF_1086	-	cation transport regulator ChaB
1087	 29.07	0	1154205..1154579	+	124	67459479	-	RF_1087	-	ankyrin repeat-containing protein
1088	 35.19	0	1155128..1155883	+	251	67459480	-	RF_1088	-	hypothetical protein
1089	 33.03	0	1156040..1157680	+	546	67459481	recN	RF_1089	-	DNA repair protein RecN
1090	 34.70	0	1157818..1158843	+	341	67459482	-	RF_1090	-	thermostable carboxypeptidase
1091	 31.68	0	1158782..1159327	+	181	67459483	-	RF_1091	-	thermostable carboxypeptidase
1092	 37.36	+1	1159486..1162437	+	983	67459484	kgd	RF_1092	-	alpha-ketoglutarate decarboxylase
1093	 38.06	+1	1162668..1163873	+	401	67459485	sucB	RF_1093	-	dihydrolipoamide acetyltransferase
1094	 33.57	0	1164047..1164463	+	138	67459486	-	RF_1094	-	6-pyruvoyl tetrahydropterin synthase
1095	 32.26	0	1164466..1164930	+	154	67459487	cutA	RF_1095	-	periplasmic divalent cation tolerance protein
1096	 35.17	0	1164971..1166170	+	399	67459488	gltP	RF_1096	-	Na+/H+-dicarboxylate symporters
1097	 27.18	-1	1166444..1167190	+	248	67459489	-	RF_1097	-	hypothetical protein
1098	 31.99	0	1167418..1168161	+	247	67459490	-	RF_1098	-	hypothetical protein
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.