IslandPathversion 1.0

IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.00 STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
952	 28.96	0	1012054..1012350	-	98	67459344	-	RF_0952	-	hypothetical protein
953	 30.58	0	1012478..1013167	+	229	67459345	spoT3	RF_0953	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
954	 31.55	0	1013130..1013972	-	280	67459346	-	RF_0954	-	proline/betaine transporter
955	 37.63	+1	1013976..1014440	-	154	67459347	-	RF_0955	-	proline/betaine transporter
956	 28.94	0	1015113..1015385	-	90	67459348	-	RF_0956	-	cytotoxic translational repressor of toxin-antitoxin system RelE
957	 26.84	-1	1015369..1015599	-	76	67459349	-	RF_0957	-	antitoxin of toxin-antitoxin system
958	 32.74	0	1015814..1016317	+	167	67459350	yajC	RF_0958	-	preprotein translocase subunit YajC
959	 35.39	0	1016301..1017857	+	518	67459351	secD	RF_0959	-	preprotein translocase subunit SecD
960	 30.58	0	1018003..1018620	+	205	67459352	-	RF_0960	-	Sco2 protein precursor
961	 32.30	0	1018715..1019101	+	128	67459353	ccmE	RF_0961	-	cytochrome c-type biogenesis protein CcmE
962	 36.59	+1	1019229..1019750	+	173	162022121	ppa	RF_0962	-	inorganic pyrophosphatase
963	 32.26	0	1019942..1021612	+	556	67459355	mviN	RF_0963	-	integral membrane protein MviN
964	 26.61	-1	1021593..1022336	+	247	67459356	traX	RF_0964	-	F pilin acetylation protein TraX
965	 30.02	0	1022421..1023023	+	200	67459357	-	RF_0965	-	hypothetical protein
966	 35.46	0	1023380..1024225	-	281	67459358	-	RF_0966	-	transposase
967	 33.80	0	1024520..1024735	-	71	67459359	-	RF_0967	-	transposase
968	 29.43	0	1024855..1025469	-	204	67459360	spoT10	RF_0968	-	guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
969	 26.24	-1	1025565..1026269	+	234	67459361	-	RF_0969	-	acetyltransferase
970	 26.53	-1	1026387..1029341	+	984	67459362	-	RF_0970	-	Na+/proline symporter, signal transduction histidine kinase
971	 35.46	0	1029461..1030306	+	281	67459363	-	RF_0971	-	transposase
972	 29.15	0	1030734..1032047	+	437	67459364	-	RF_0972	-	hypothetical protein
973	 29.23	0	1032882..1033661	+	259	67459365	-	RF_0973	-	hypothetical protein
974	 31.25	0	1033658..1033945	+	95	67459366	-	RF_0974	-	hypothetical protein
975	 35.78	0	1034014..1034625	+	203	67459367	-	RF_0975	-	transposase
976	 36.71	+1	1034600..1035043	+	147	67459368	-	RF_0976	-	transposase
977	 36.83	+1	1035040..1035840	+	266	67459369	-	RF_0977	-	transposase/IS protein
978	 31.75	0	1035905..1036156	-	83	67459370	-	RF_0978	-	hypothetical protein
979	 39.62	+1	1036470..1038377	+	635	67459371	thrS	RF_0979	-	threonyl-tRNA synthetase
980	 26.19	-1	1038698..1039117	-	139	67459372	-	RF_0980	-	acetyltransferase
981	 34.18	0	1039209..1041092	+	627	67459373	mdlB	RF_0981	-	ABC-type multidrug transport system, ATPase and permease components
982	 28.61	0	1041511..1042314	-	267	67459374	-	RF_0982	-	hypothetical protein
983	 30.68	0	1042443..1042856	-	137	67459375	-	RF_0983	-	hypothetical protein
984	 28.72	0	1042856..1044046	-	396	67459376	-	RF_0984	-	hypothetical protein
985	 36.48	+1	1044264..1045628	+	454	67459377	tolC	RF_0985	-	TolC family type I secretion outer membrane protein
986	 29.32	0	1045630..1046028	+	132	67459378	-	RF_0986	-	hypothetical protein
987	 37.21	+1	1046173..1047873	+	566	67459379	-	RF_0987	-	ankyrin repeat-containing protein
988	 33.99	0	1048243..1050231	+	662	67459380	parE	RF_0988	-	DNA topoisomerase IV subunit B
989	 33.04	0	1050402..1051760	+	452	67459381	ctp	RF_0989	-	carboxyl-terminal protease
990	 28.71	0	1052022..1053515	+	497	67459382	barA	RF_0990	-	histidine kinase sensor protein
991	 32.52	0	1053991..1054728	+	245	67459383	-	RF_0991	-	hypothetical protein
992	 25.04	-1	1054741..1055403	+	220	67459384	-	RF_0992	-	hypothetical protein
993	 29.77	0	1055408..1056670	+	420	67459385	-	RF_0993	-	WD-40 repeat-containing protein
994	 35.47	0	1056764..1057231	+	155	67459386	rplM	RF_0994	-	50S ribosomal protein L13
995	 32.51	0	1057238..1057723	+	161	67459387	rpsI	RF_0995	-	30S ribosomal protein S9
996	 29.44	0	1058481..1059224	+	247	67459388	-	RF_0996	-	D-alanyl-D-alanine dipeptidase
997	 32.73	0	1059378..1059710	+	110	67459389	-	RF_0997	-	putative pterin-4-alpha-carbinolamine dehydratase (PHS)
998	 33.65	0	1059920..1060873	+	317	67459390	-	RF_0998	-	transposase
999	 30.45	0	1060948..1061190	+	80	67459391	-	RF_0999	-	transposase
1000	 39.05	+1	1061492..1063294	-	600	67459392	lepA	RF_1000	-	GTP-binding protein LepA
1001	 39.44	+1	1063533..1064640	+	368	67459393	prfB	RF_1001	-	peptide chain release factor 2
1002	 28.42	0	1064650..1065666	+	338	67459394	-	RF_1002	-	hypothetical protein
1003	 29.20	0	1065752..1066597	+	281	67459395	-	RF_1003	-	hypothetical protein
1004	 30.32	0	1066682..1067146	-	154	67459396	hspC2	RF_1004	-	small heat shock protein
1005	 26.98	-1	1067178..1067618	-	146	67459397	hspC1	RF_1005	-	small heat shock protein
1006	 32.67	0	1067740..1068192	-	150	67459398	-	RF_1006	-	hypothetical protein
1007	 40.48	+2	1068415..1069170	-	251	67459399	fbcH	RF_1007	-	cytochrome c1, heme protein precursor
1008	 29.43	0	1069305..1069739	-	144	67459400	-	RF_1008	-	endo/excinuclease amino terminal domain-containing protein
1009	 38.51	+1	1069787..1070983	-	398	67459401	petB	RF_1009	-	cytochrome b
1010	 43.07	+2	1070990..1071523	-	177	67459402	petA	RF_1010	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1011	 32.68	0	1071545..1072003	-	152	67459403	-	RF_1011	-	hypothetical protein
1012	 24.54	-1	1072080..1072727	-	215	67459404	ccmB	RF_1012	-	Heme exporter protein B
1013	 31.10	0	1072720..1073748	-	342	67459405	mnhB	RF_1013	-	putative monovalent cation/H+ antiporter subunit B
1014	 34.42	0	1073813..1074181	-	122	67459406	-	RF_1014	-	putative monovalent cation/H+ antiporter subunit G
1015	 35.84	0	1074245..1075720	-	491	67459407	icd	RF_1015	-	isocitrate dehydrogenase
1016	 30.78	0	1075863..1076411	-	182	67459408	-	RF_1016	-	hypothetical protein
1017	 29.41	0	1076572..1077183	-	203	67459409	-	RF_1017	-	hypothetical protein
1018	 41.75	+2	1077518..1079347	+	609	67459410	typA	RF_1018	-	GTP-binding protein TypA
1019	 38.63	+1	1079711..1080691	-	326	67459411	pdhB	RF_1019	-	pyruvate dehydrogenase subunit beta
1020	 37.61	+1	1080826..1081806	-	326	67459412	pdhA	RF_1020	-	pyruvate dehydrogenase e1 component, alpha subunit precursor
1021	 32.96	0	1081982..1082785	-	267	67459413	xth1	RF_1021	-	exodeoxyribonuclease III
1022	 29.20	0	1082799..1083983	-	394	67459414	pbpE	RF_1022	-	penicillin-binding protein 4*
1023	 28.98	0	1083988..1084905	-	305	67459415	rluA1	RF_1023	-	ribosomal large subunit pseudouridine synthase
1024	 30.77	0	1085135..1086148	-	337	67459416	coxW	RF_1024	-	cytochrome c oxidase assembly protein
1025	 31.76	0	1086391..1088427	-	678	67459417	rne	RF_1025	-	ribonuclease E
1026	 18.66	-2	1088854..1089255	+	133	67459418	-	RF_1026	-	hypothetical protein
1027	 27.91	-1	1089264..1090001	+	245	67459419	-	RF_1027	-	hypothetical protein
1028	 32.99	0	1090184..1091050	+	288	67459420	lpxC	RF_1028	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1029	 26.83	-1	1091059..1092135	-	358	67459421	-	RF_1029	-	hypothetical protein
1030	 37.50	+1	1092248..1092775	+	175	67459422	cycM	RF_1030	-	cytochrome c
1031	 32.91	0	1092759..1093232	+	157	67459423	-	RF_1031	-	hypothetical protein
1032	 27.63	-1	1093465..1095183	+	572	67459424	-	RF_1032	-	hypothetical protein
1033	 30.91	0	1095442..1096677	-	411	67459425	ftsA	RF_1033	-	cell division protein FtsA
1034	 28.61	0	1096805..1097608	-	267	67459426	ftsQ	RF_1034	-	cell division protein FtsQ
1035	 34.68	0	1097605..1098570	-	321	67459427	ddl	RF_1035	-	D-alanine--D-alanine ligase
1036	 33.67	0	1098696..1099583	-	295	67459428	murB	RF_1036	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1037	 33.26	0	1099926..1101362	-	478	67459429	murC	RF_1037	-	UDP-N-acetylmuramate--L-alanine ligase
1038	 27.86	-1	1101532..1102755	-	407	67459430	-	RF_1038	-	hypothetical protein
1039	 32.92	0	1102810..1103052	+	80	67459431	bolA1	RF_1039	-	morphology/transcriptional regulatory  protein BolA
1040	 28.92	0	1103049..1103252	+	67	67459432	-	RF_1040	-	hypothetical protein
1041	 30.69	0	1103257..1103445	-	62	67459433	-	RF_1041	-	hypothetical protein
1042	 33.01	0	1103414..1103719	-	101	67459434	-	RF_1042	-	hypothetical protein
1043	 29.29	0	1103692..1104087	-	131	67459435	-	RF_1043	-	hypothetical protein
1044	 31.93	0	1104190..1105257	-	355	67459436	emrA	RF_1044	-	multidrug resistance protein A
1045	 32.03	0	1105251..1106018	-	255	67459437	pssA	RF_1045	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1046	 34.34	0	1106335..1107030	-	231	67459438	psd	RF_1046	-	phosphatidylserine decarboxylase
1047	 40.88	+2	1107063..1107380	-	105	67459439	-	RF_1047	-	hypothetical protein
1048	 27.44	-1	1107620..1108366	-	248	67459440	suhB	RF_1048	-	extragenic suppressor protein SuhB
1049	 31.22	0	1108556..1109122	-	188	67459441	efp	RF_1049	-	elongation factor P
1050	 31.56	0	1109198..1110550	+	450	67459442	pleD	RF_1050	-	response regulator PleD
1051	 35.39	0	1110575..1111060	+	161	67459443	nudH	RF_1051	-	dinucleoside polyphosphate hydrolase
32.00	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.