IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.34   STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
917	 66.11	0	947000..948250	-	416	146276975	-	Rsph17025_0927	-	tyrosyl-tRNA synthetase
918	 74.64	+1	948326..949441	+	371	146276976	anmK	Rsph17025_0928	-	anhydro-N-acetylmuramic acid kinase
919	 63.46	-1	949731..949886	+	51	146276977	-	Rsph17025_0929	-	hypothetical protein
920	 66.35	0	950004..951281	-	425	146276978	-	Rsph17025_0930	-	phosphopyruvate hydratase
921	 70.28	0	951318..952202	-	294	146276979	-	Rsph17025_0931	-	hypothetical protein
922	 67.39	0	952294..952707	-	137	146276980	-	Rsph17025_0932	-	ferric uptake regulator family protein
923	 66.16	0	953223..956942	+	1239	146276981	-	Rsph17025_0933	-	ribonucleotide-diphosphate reductase subunit alpha
924	 65.88	0	957291..957800	+	169	146276982	-	Rsph17025_0934	-	cell wall hydrolase, SleB
925	 69.78	0	958098..958547	+	149	146276983	-	Rsph17025_0935	-	transposase IS3/IS911 family protein
926	 63.03	-1	958574..958930	+	118	146276984	-	Rsph17025_0936	-	IS66 Orf2 family protein
927	 64.40	-1	958914..959486	-	190	146276985	-	Rsph17025_0937	-	transposase, IS4 family protein
928	 57.14	-2	959538..959684	-	48	146276986	-	Rsph17025_0938	-	hypothetical protein
929	 66.03	0	960096..961037	-	313	146276987	-	Rsph17025_0939	-	hypothetical protein
930	 65.10	0	961404..962168	+	254	146276988	-	Rsph17025_0940	-	hypothetical protein
931	 67.04	0	963936..964748	+	270	146276989	-	Rsph17025_0942	-	transposase
932	 70.46	0	965364..965864	-	166	146276990	-	Rsph17025_0943	-	nucleic acid binding, OB-fold, tRNA/helicase-type
933	 63.27	-1	965975..966298	+	107	146276991	-	Rsph17025_0944	-	ferredoxin
934	 69.40	0	966386..967411	-	341	146276992	-	Rsph17025_0945	-	pyridoxal 4-dehydrogenase
935	 70.40	0	967451..967879	-	142	146276993	-	Rsph17025_0946	-	hypothetical protein
936	 70.25	0	967936..968994	-	352	146276994	-	Rsph17025_0947	-	ABC transporter related
937	 64.52	-1	969011..969802	-	263	146276995	-	Rsph17025_0948	-	binding-protein-dependent transport systems inner membrane component
938	 65.76	0	969799..970680	-	293	146276996	-	Rsph17025_0949	-	binding-protein-dependent transport systems inner membrane component
939	 67.39	0	970827..971927	-	366	146276997	-	Rsph17025_0950	-	extracellular solute-binding protein
940	 67.06	0	972184..973188	+	334	146276998	-	Rsph17025_0951	-	basic membrane lipoprotein
941	 70.55	0	973185..974705	+	506	146276999	-	Rsph17025_0952	-	ABC transporter related
942	 70.98	0	974695..975738	+	347	146277000	-	Rsph17025_0953	-	inner-membrane translocator
943	 69.41	0	975735..976682	+	315	146277001	-	Rsph17025_0954	-	inner-membrane translocator
944	 69.17	0	976682..977959	+	425	146277002	-	Rsph17025_0955	-	cytosine deaminase
945	 66.19	0	978149..979198	+	349	146277003	-	Rsph17025_0956	-	hypothetical protein
946	 71.90	+1	979326..979898	+	190	146277004	-	Rsph17025_0957	-	methyltransferase type 12
947	 69.49	0	979969..980889	+	306	146277005	-	Rsph17025_0958	-	diacylglycerol kinase, catalytic region
948	 68.63	0	980886..981698	+	270	146277006	-	Rsph17025_0959	-	metallophosphoesterase
949	 70.32	0	981708..984032	-	774	146277007	-	Rsph17025_0960	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
950	 72.54	+1	984453..985133	+	226	146277008	-	Rsph17025_0961	-	hypothetical protein
951	 68.31	0	985166..987532	+	788	146277009	-	Rsph17025_0962	-	cellulose synthase (UDP-forming)
952	 72.07	+1	987532..989697	+	721	146277010	-	Rsph17025_0963	-	hypothetical protein
953	 70.12	0	989694..990764	+	356	146277011	-	Rsph17025_0964	-	cellulase
954	 71.32	0	990749..992167	+	472	146277012	-	Rsph17025_0965	-	hypothetical protein
955	 66.77	0	992214..993218	-	334	146277013	-	Rsph17025_0966	-	diguanylate cyclase
956	 71.36	0	993354..994547	-	397	146277014	-	Rsph17025_0967	-	NnrS family protein
957	 68.95	0	994756..995457	+	233	146277015	-	Rsph17025_0968	-	CRP/FNR family transcriptional regulator
958	 70.05	0	995479..995685	-	68	146277016	-	Rsph17025_0969	-	hypothetical protein
959	 64.64	-1	995835..996278	+	147	146277017	-	Rsph17025_0970	-	hypothetical protein
960	 62.86	-1	996292..997632	+	446	146277018	-	Rsph17025_0971	-	nitric-oxide reductase
961	 68.30	0	997629..998426	+	265	146277019	-	Rsph17025_0972	-	ATPase
962	 72.48	+1	998431..1000305	+	624	146277020	-	Rsph17025_0973	-	von Willebrand factor, type A
963	 70.69	0	1000307..1000480	+	57	146277021	-	Rsph17025_0974	-	hypothetical protein
964	 68.02	0	1000477..1000698	+	73	146277022	-	Rsph17025_0975	-	hypothetical protein
965	 70.11	0	1000695..1001390	+	231	146277023	-	Rsph17025_0976	-	NnrU family protein
966	 66.52	0	1001465..1002823	+	452	146277024	-	Rsph17025_0977	-	coproporphyrinogen III oxidase
967	 63.71	-1	1002875..1003618	-	247	146277025	-	Rsph17025_0978	-	two component LuxR family transcriptional regulator
968	 68.48	0	1004005..1005384	-	459	146277026	-	Rsph17025_0979	-	PUCC protein
969	 60.00	-2	1005578..1005742	-	54	146277027	-	Rsph17025_0980	-	antenna complex, alpha/beta subunit
970	 62.82	-1	1005758..1005913	-	51	146277028	-	Rsph17025_0981	-	antenna complex, alpha/beta subunit
971	 72.23	+1	1006351..1007661	-	436	146277029	-	Rsph17025_0982	-	aminotransferase class-III
972	 73.12	+1	1007669..1008706	-	345	146277030	-	Rsph17025_0983	-	aminoglycoside phosphotransferase
973	 75.24	+1	1008909..1009736	+	275	146277031	-	Rsph17025_0984	-	urease accessory protein UreD
974	 66.01	0	1009747..1010049	+	100	146277032	ureA	Rsph17025_0985	-	urease subunit gamma
975	 63.40	-1	1010100..1010405	+	101	146277033	ureB	Rsph17025_0986	-	urease subunit beta
976	 70.44	0	1010430..1010747	+	105	146277034	-	Rsph17025_0987	-	hypothetical protein
977	 67.31	0	1011081..1012787	+	568	146277035	ureC	Rsph17025_0988	-	urease subunit alpha
978	 72.67	+1	1012843..1013175	-	110	146277036	-	Rsph17025_0989	-	hypothetical protein
979	 69.22	0	1013245..1013793	+	182	146277037	ureE	Rsph17025_0990	-	urease accessory protein UreE
980	 72.20	+1	1013790..1014422	+	210	146277038	-	Rsph17025_0991	-	urease accessory protein UreF
981	 69.07	0	1014419..1015042	+	207	146277039	-	Rsph17025_0992	-	urease accessory protein UreG
982	 63.39	-1	1015342..1016622	+	426	146277040	-	Rsph17025_0993	-	ABC-type branched-chain amino acid transport systems periplasmic component-like protein
983	 70.09	0	1016707..1018635	+	642	146277041	-	Rsph17025_0994	-	inner-membrane translocator
984	 68.86	0	1018669..1019901	+	410	146277042	-	Rsph17025_0995	-	inner-membrane translocator
985	 65.86	0	1019898..1020641	+	247	146277043	-	Rsph17025_0996	-	ABC transporter related
986	 67.24	0	1020643..1021338	+	231	146277044	-	Rsph17025_0997	-	ABC transporter related
987	 65.60	0	1021415..1021882	-	155	146277045	-	Rsph17025_0998	-	cytochrome c, class I
988	 67.45	0	1022210..1023100	-	296	146277046	-	Rsph17025_0999	-	hypothetical protein
989	 64.56	-1	1023162..1024253	-	363	146277047	-	Rsph17025_1000	-	magnesium-protoporphyrin IX monomethyl ester cyclase
990	 64.31	-1	1024250..1024546	-	98	146277048	-	Rsph17025_1001	-	hypothetical protein
991	 67.96	0	1024568..1025032	-	154	146277049	-	Rsph17025_1002	-	hypothetical protein
992	 69.64	0	1025097..1025735	-	212	146277050	-	Rsph17025_1003	-	hypothetical protein
993	 65.64	0	1025854..1026636	-	260	146277051	-	Rsph17025_1004	-	photosynthetic reaction center subunit H
994	 69.86	0	1026655..1028094	-	479	146277052	-	Rsph17025_1005	-	PUCC protein
995	 66.07	0	1028091..1028759	-	222	146277053	-	Rsph17025_1006	-	Mg-protoporphyrin IX methyl transferase
996	 65.55	0	1028803..1029696	-	297	146277054	chlL	Rsph17025_1007	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
997	 68.09	0	1029762..1033343	-	1193	146277055	bchH	Rsph17025_1008	-	magnesium chelatase subunit H
998	 67.50	0	1033333..1034901	-	522	146277056	-	Rsph17025_1009	-	light-independent protochlorophyllide reductase subunit B
999	 70.40	0	1034972..1036258	-	428	146277057	-	Rsph17025_1010	-	light-independent protochlorophyllide reductase subunit N
1000	 64.60	-1	1036255..1036737	-	160	146277058	-	Rsph17025_1011	-	2-vinyl bacteriochlorophyllide hydratase
1001	 67.92	0	1037112..1037906	+	264	146277059	-	Rsph17025_1012	-	hypothetical protein
1002	 68.08	0	1037944..1039359	+	471	146277060	-	Rsph17025_1013	-	Fis family transcriptional regulator
1003	 64.67	-1	1039506..1041308	+	600	146277061	-	Rsph17025_1014	-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
1004	 73.75	+1	1041315..1041935	+	206	146277062	-	Rsph17025_1015	-	bacteriochlorophyll 4-vinyl reductase
1005	 68.65	0	1042009..1042917	+	302	146277063	-	Rsph17025_1016	-	bacteriochlorophyll/chlorophyll a synthase
1006	 71.18	0	1042914..1044197	+	427	146277064	-	Rsph17025_1017	-	PUCC protein
1007	 67.26	0	1044200..1045384	+	394	146277065	-	Rsph17025_1018	-	geranylgeranyl reductase
1008	 68.32	0	1045375..1045920	+	181	146277066	-	Rsph17025_1019	-	isopentenyl-diphosphate delta-isomerase, type 1
1009	 71.25	0	1045999..1046871	-	290	146277067	-	Rsph17025_1020	-	alpha/beta hydrolase fold
1010	 75.38	+2	1046874..1048514	-	546	146277068	bchD	Rsph17025_1021	-	magnesium chelatase subunit D
1011	 69.45	0	1048574..1049578	-	334	146277069	bchI	Rsph17025_1022	-	magnesium chelatase subunit I
1012	 67.26	0	1049583..1050587	-	334	146277070	-	Rsph17025_1023	-	hypothetical protein
1013	 67.50	0	1050745..1052301	+	518	146277071	-	Rsph17025_1024	-	phytoene dehydrogenase-related protein
1014	 70.99	0	1052298..1053362	+	354	146277072	-	Rsph17025_1025	-	squalene/phytoene synthase
1015	 66.25	0	1053392..1053871	+	159	146277073	-	Rsph17025_1026	-	TspO and MBR like protein
1016	 70.43	0	1053928..1055949	-	673	146277074	-	Rsph17025_1027	-	ferredoxin
68.34	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.