IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.34   STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
41	 67.26	0	49673..50851	-	392	146276099	-	Rsph17025_0041	-	radical SAM protein
42	 67.23	0	50977..51507	-	176	146276100	-	Rsph17025_0042	-	hypothetical protein
43	 70.30	0	51674..52663	+	329	146276101	-	Rsph17025_0043	-	L-asparaginase II
44	 66.11	0	52938..53297	+	119	146276102	-	Rsph17025_0044	-	hypothetical protein
45	 65.06	0	53314..54120	-	268	146276103	-	Rsph17025_0045	-	hypothetical protein
46	 67.52	0	54204..55028	+	274	146276104	dapD	Rsph17025_0046	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
47	 67.27	0	55115..55447	+	110	146276105	-	Rsph17025_0047	-	hypothetical protein
48	 69.20	0	55504..56646	+	380	146276106	-	Rsph17025_0048	-	succinyl-diaminopimelate desuccinylase
49	 70.98	0	56643..57059	+	138	146276107	-	Rsph17025_0049	-	GCN5-related N-acetyltransferase
50	 70.75	0	57105..59357	+	750	146276108	-	Rsph17025_0050	-	ribonuclease R
51	 73.30	+1	59542..60807	+	421	146276109	-	Rsph17025_0051	-	lytic murein transglycosylase
52	 61.41	-1	60935..62380	+	481	146276110	-	Rsph17025_0052	-	hypothetical protein
53	 60.94	-2	62387..63346	-	319	146276111	-	Rsph17025_0053	-	integrase catalytic subunit
54	 66.67	0	63450..63587	+	45	146276112	-	Rsph17025_0054	-	hypothetical protein
55	 74.98	+1	63639..65249	-	536	146276113	-	Rsph17025_0055	-	hypothetical protein
56	 67.77	0	65319..65591	-	90	146276114	-	Rsph17025_0056	-	hypothetical protein
57	 67.34	0	65804..66544	+	246	146276115	-	Rsph17025_0057	-	hypothetical protein
58	 63.82	-1	66633..66878	+	81	146276116	-	Rsph17025_0058	-	hypothetical protein
59	 73.65	+1	66891..68078	+	395	146276117	-	Rsph17025_0059	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
60	 74.67	+1	68078..69076	+	332	146276118	-	Rsph17025_0060	-	tetraacyldisaccharide 4'-kinase
61	 70.77	0	69087..70232	-	381	146276119	-	Rsph17025_0061	-	L-carnitine dehydratase/bile acid-inducible protein F
62	 64.88	0	70229..70900	-	223	146276120	-	Rsph17025_0062	-	DSBA oxidoreductase
63	 71.00	0	70912..71442	-	176	146276121	-	Rsph17025_0063	-	hypothetical protein
64	 72.61	+1	71524..72633	+	369	146276122	-	Rsph17025_0064	-	A/G-specific adenine glycosylase
65	 67.61	0	72670..73947	+	425	146276123	-	Rsph17025_0065	-	alkane 1-monooxygenase
66	 66.22	0	74102..75220	-	372	146276124	-	Rsph17025_0066	-	DNA methylase N-4/N-6 domain-containing protein
67	 67.29	0	75309..75947	-	212	146276125	-	Rsph17025_0067	-	ribonuclease H
68	 74.51	+1	76173..76427	-	84	146276126	-	Rsph17025_0068	-	hypothetical protein
69	 73.43	+1	76424..76837	-	137	146276127	-	Rsph17025_0069	-	ribonuclease P protein component
70	 69.63	0	76859..76993	-	44	146276128	-	Rsph17025_0070	-	ribosomal protein L34
71	 70.30	0	77243..77902	+	219	146276129	-	Rsph17025_0071	-	ribosomal protein S16
72	 72.19	+1	77902..79314	+	470	146276130	-	Rsph17025_0072	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
73	 69.38	0	79371..80768	+	465	146276131	-	Rsph17025_0073	-	integral membrane sensor signal transduction histidine kinase
74	 66.59	0	80830..82218	-	462	146276132	-	Rsph17025_0074	-	dihydrolipoamide dehydrogenase
75	 68.44	0	82782..84302	-	506	146276133	-	Rsph17025_0076	-	dihydrolipoamide acetyltransferase
76	 65.05	0	84305..87268	-	987	146276134	kgd	Rsph17025_0077	-	alpha-ketoglutarate decarboxylase
77	 66.89	0	87324..88208	-	294	146276135	-	Rsph17025_0078	-	succinyl-CoA synthetase, alpha subunit
78	 64.99	0	88213..89406	-	397	146276136	sucC	Rsph17025_0079	-	succinyl-CoA synthetase subunit beta
79	 67.29	0	89636..90598	-	320	146276137	-	Rsph17025_0080	-	malate dehydrogenase
80	 67.07	0	90800..91537	+	245	146276138	-	Rsph17025_0081	-	hypothetical protein
81	 67.02	0	91624..92481	+	285	146276139	-	Rsph17025_0082	-	citrate (pro-3S)-lyase
82	 66.49	0	92490..93044	+	184	146276140	-	Rsph17025_0083	-	NnrU family protein
83	 64.22	-1	93041..93244	+	67	146276141	-	Rsph17025_0084	-	hypothetical protein
84	 66.86	0	93245..94276	+	343	146276142	-	Rsph17025_0085	-	dehydratase
85	 65.62	0	94492..94875	+	127	146276143	-	Rsph17025_0086	-	succinate dehydrogenase, cytochrome b subunit
86	 65.05	0	94887..95258	+	123	146276144	-	Rsph17025_0087	-	hypothetical protein
87	 68.05	0	95269..97071	+	600	146276145	sdhA	Rsph17025_0088	-	succinate dehydrogenase flavoprotein subunit
88	 73.83	+1	97071..97391	+	106	146276146	-	Rsph17025_0089	-	hypothetical protein
89	 70.33	0	97395..97667	+	90	146276147	-	Rsph17025_0090	-	hypothetical protein
90	 63.45	-1	97686..98462	+	258	146276148	sdhB	Rsph17025_0091	-	succinate dehydrogenase iron-sulfur subunit
91	 65.56	0	98514..98876	-	120	146276149	-	Rsph17025_0092	-	hypothetical protein
92	 71.58	0	98970..99620	-	216	146276150	-	Rsph17025_0093	-	GntR family transcriptional regulator
93	 70.45	0	99653..100339	-	228	146276151	-	Rsph17025_0094	-	hypothetical protein
94	 61.15	-2	100453..100833	+	126	146276152	-	Rsph17025_0095	-	hypothetical protein
95	 65.00	0	101961..102260	-	99	146276153	-	Rsph17025_0096	-	hypothetical protein
96	 73.92	+1	102650..103228	-	192	146276154	-	Rsph17025_0097	-	hypothetical protein
97	 61.90	-1	103498..104148	+	216	146276155	-	Rsph17025_0098	-	hypothetical protein
98	 70.83	0	104316..104771	-	151	146276156	-	Rsph17025_0099	-	hypothetical protein
99	 72.51	+1	104749..105159	-	136	146276157	-	Rsph17025_0100	-	hypothetical protein
100	 73.88	+1	105143..105655	-	170	146276158	-	Rsph17025_0101	-	hypothetical protein
101	 70.87	0	105663..106043	-	126	146276159	-	Rsph17025_0102	-	hypothetical protein
102	 66.27	0	106103..107122	-	339	146276160	-	Rsph17025_0103	-	hypothetical protein
103	 72.44	+1	107139..108524	-	461	146276161	-	Rsph17025_0104	-	peptidase S49
104	 69.06	0	108980..109522	-	180	146276162	-	Rsph17025_0105	-	hypothetical protein
105	 71.20	0	109519..109893	-	124	146276163	-	Rsph17025_0106	-	hypothetical protein
106	 69.86	0	110109..110672	-	187	146276164	-	Rsph17025_0107	-	hypothetical protein
107	 69.67	0	110665..110997	-	110	146276165	-	Rsph17025_0108	-	hypothetical protein
108	 62.54	-1	111019..111648	-	209	146276166	-	Rsph17025_0109	-	hypothetical protein
109	 63.01	-1	111658..112368	-	236	146276167	-	Rsph17025_0110	-	hypothetical protein
110	 70.15	0	112861..113577	-	238	146276168	-	Rsph17025_0111	-	hypothetical protein
111	 69.24	0	113577..114818	-	413	146276169	-	Rsph17025_0112	-	phage integrase family protein
112	 62.34	-1	114970..115431	-	153	146276170	-	Rsph17025_0113	-	hypothetical protein
113	 65.98	0	115782..117083	-	433	146276171	-	Rsph17025_0114	-	HlyD family type I secretion membrane fusion protein
114	 67.53	0	117080..118816	-	578	146276172	-	Rsph17025_0115	-	type I secretion system ATPase
115	 65.14	0	119025..119810	+	261	146276173	-	Rsph17025_0116	-	VacJ family lipoprotein
116	 66.99	0	119800..120423	+	207	146276174	-	Rsph17025_0117	-	toluene tolerance family protein
117	 69.37	0	120533..122899	-	788	146276175	-	Rsph17025_0118	-	1A family penicillin-binding protein
118	 61.06	-2	123062..123400	+	112	146276176	-	Rsph17025_0119	-	nitrogen regulatory protein P-II
119	 65.85	0	123428..124780	+	450	146276177	-	Rsph17025_0120	-	ammonium transporter
120	 66.75	0	124942..126162	-	406	146276178	-	Rsph17025_0121	-	aromatic amino acid aminotransferase
121	 69.49	0	126134..126982	-	282	146276179	-	Rsph17025_0122	-	rhodanese domain-containing protein
122	 62.45	-1	127075..127548	-	157	146276180	smpB	Rsph17025_0123	-	SsrA-binding protein
123	 68.38	0	127678..128550	-	290	146276181	-	Rsph17025_0124	-	dihydrodipicolinate synthase
124	 72.00	+1	128630..130672	+	680	146276182	-	Rsph17025_0125	-	lytic transglycosylase, catalytic
125	 64.67	-1	130812..131261	+	149	146276183	-	Rsph17025_0126	-	hypothetical protein
126	 65.73	0	131258..132427	+	389	146276184	-	Rsph17025_0127	-	ATPase-like protein
127	 66.30	0	132408..132959	-	183	146276185	-	Rsph17025_0128	-	hypothetical protein
128	 65.88	0	133040..133294	+	84	146276186	-	Rsph17025_0129	-	hypothetical protein
129	 71.75	0	133389..133880	+	163	146276187	-	Rsph17025_0130	-	Phage DNA packaging protein Nu1 subunit of terminase-like protein
130	 71.11	0	133867..135645	+	592	146276188	-	Rsph17025_0131	-	phage terminase GpA
131	 61.42	-1	135923..136189	-	88	146276189	-	Rsph17025_0132	-	XRE family transcriptional regulator
132	 63.37	-1	136248..136490	+	80	146276190	-	Rsph17025_0133	-	hypothetical protein
133	 69.44	0	136480..136839	+	119	146276191	-	Rsph17025_0134	-	hypothetical protein
134	 61.33	-2	136934..137458	+	174	146276192	-	Rsph17025_0135	-	hypothetical protein
135	 71.25	0	137455..138786	+	443	146276193	-	Rsph17025_0136	-	lambda family phage portal protein
136	 69.73	0	138783..140543	+	586	146276194	-	Rsph17025_0137	-	peptidase U35, phage prohead HK97
137	 66.21	0	140543..140761	+	72	146276195	-	Rsph17025_0138	-	hypothetical protein
138	 66.97	0	140763..141092	+	109	146276196	-	Rsph17025_0139	-	hypothetical protein
139	 59.66	-2	141340..142467	+	375	146276197	-	Rsph17025_0140	-	phage integrase family protein
140	 72.88	+1	142619..143680	-	353	146276198	-	Rsph17025_0141	-	FAD dependent oxidoreductase
68.34	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.