IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.34   STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
771	 70.90	0	792661..793629	+	322	146276829	-	Rsph17025_0777	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
772	 70.36	0	793642..794454	+	270	146276830	-	Rsph17025_0778	-	binding-protein-dependent transport systems inner membrane component
773	 70.13	0	794463..795212	+	249	146276831	-	Rsph17025_0779	-	ABC transporter related
774	 72.28	+1	795247..796386	-	379	146276832	-	Rsph17025_0780	-	cystathionine gamma-synthase
775	 71.57	0	796379..796888	-	169	146276833	-	Rsph17025_0781	-	OsmC family protein
776	 70.15	0	796885..798834	-	649	146276834	-	Rsph17025_0782	-	acetate--CoA ligase
777	 66.67	0	798899..799690	-	263	146276835	-	Rsph17025_0783	-	YaeC family lipoprotein
778	 68.77	0	799724..800389	-	221	146276836	-	Rsph17025_0784	-	binding-protein-dependent transport systems inner membrane component
779	 69.56	0	800379..801656	-	425	146276837	-	Rsph17025_0785	-	ABC transporter related
780	 66.67	0	801906..802700	+	264	146276838	-	Rsph17025_0786	-	NLPA lipoprotein
781	 71.52	0	802715..804364	+	549	146276839	-	Rsph17025_0787	-	AMP-dependent synthetase and ligase
782	 69.01	0	804467..804808	+	113	146276840	-	Rsph17025_0788	-	hypothetical protein
783	 65.50	0	805012..805524	-	170	146276841	-	Rsph17025_0789	-	AsnC family transcriptional regulator
784	 72.41	+1	805521..805973	-	150	146276842	-	Rsph17025_0790	-	hypothetical protein
785	 68.19	0	805977..806696	-	239	146276843	-	Rsph17025_0791	-	sulfate ABC transporter, ATPase subunit
786	 68.17	0	806707..807573	-	288	146276844	-	Rsph17025_0792	-	sulfate ABC transporter, inner membrane subunit CysW
787	 70.83	0	807577..808416	-	279	146276845	-	Rsph17025_0793	-	sulfate ABC transporter, inner membrane subunit CysT
788	 68.25	0	808418..809425	-	335	146276846	-	Rsph17025_0794	-	sulfate ABC transporter, periplasmic sulfate-binding protein
789	 70.83	0	809490..809753	-	87	146276847	-	Rsph17025_0795	-	hypothetical protein
790	 63.33	-1	810129..810698	+	189	146276848	-	Rsph17025_0796	-	BadM/Rrf2 family transcriptional regulator
791	 62.62	-1	810938..811258	+	106	146276849	-	Rsph17025_0797	-	transposase IS3/IS911 family protein
792	 65.07	0	811324..811824	+	166	146276850	-	Rsph17025_0798	-	hypothetical protein
793	 67.83	0	811821..812762	+	313	146276851	-	Rsph17025_0799	-	transposase, IS4 family protein
794	 65.90	0	812821..813345	+	174	146276852	-	Rsph17025_0800	-	IstB ATP binding domain-containing protein
795	 63.37	-1	813571..813813	+	80	146276853	-	Rsph17025_0801	-	IstB ATP binding domain-containing protein
796	 67.65	0	814150..815166	-	338	146276854	-	Rsph17025_0802	-	transposase IS116/IS110/IS902 family protein
797	 65.98	0	815341..816363	+	340	146276855	-	Rsph17025_0803	-	transposase IS116/IS110/IS902 family protein
798	 60.71	-2	816517..817641	+	374	146276856	-	Rsph17025_0804	-	transposase IS116/IS110/IS902 family protein
799	 62.99	-1	818059..820017	-	652	146276857	-	Rsph17025_0805	-	hypothetical protein
800	 64.81	-1	820014..820499	-	161	146276858	-	Rsph17025_0806	-	hypothetical protein
801	 61.10	-2	820496..821716	-	406	146276859	-	Rsph17025_0807	-	hypothetical protein
802	 70.48	0	822331..824478	-	715	146276860	-	Rsph17025_0808	-	ATPase central domain-containing protein
803	 57.19	-2	824928..825476	-	182	146276861	-	Rsph17025_0809	-	hypothetical protein
804	 57.75	-2	825669..825926	+	85	146276862	-	Rsph17025_0810	-	XRE family transcriptional regulator
805	 57.78	-2	825914..826228	-	104	146276863	-	Rsph17025_0811	-	hypothetical protein
806	 71.39	0	827873..829186	+	437	146276864	-	Rsph17025_0814	-	aminotransferase, class V
807	 72.47	+1	829368..830780	+	470	146276865	-	Rsph17025_0815	-	deoxyribodipyrimidine photo-lyase
808	 65.92	0	830818..832029	+	403	146276866	-	Rsph17025_0816	-	cyclopropane-fatty-acyl-phospholipid synthase
809	 69.84	0	832053..832493	+	146	146276867	-	Rsph17025_0817	-	hypothetical protein
810	 73.19	+1	832490..833578	+	362	146276868	-	Rsph17025_0818	-	NUDIX hydrolase
811	 68.12	0	833701..834735	+	344	146276869	-	Rsph17025_0819	-	cysteine synthase A
812	 70.35	0	834740..837289	+	849	146276870	-	Rsph17025_0820	-	MscS mechanosensitive ion channel
813	 72.08	+1	837289..838008	+	239	146276871	-	Rsph17025_0821	-	threonyl/alanyl tRNA synthetase, SAD
814	 72.36	+1	838027..839115	-	362	146276872	-	Rsph17025_0822	-	cell wall biosynthesis glycosyltransferase-like protein
815	 70.26	0	839115..839921	-	268	146276873	-	Rsph17025_0823	-	metallophosphoesterase
816	 65.11	0	840227..840934	-	235	146276874	-	Rsph17025_0824	-	phosphoesterase, PA-phosphatase related
817	 67.20	0	841292..842035	+	247	146276875	-	Rsph17025_0825	-	membrane-bound lytic murein transglycosylase B-like protein
818	 62.82	-1	842178..843062	-	294	146276876	-	Rsph17025_0826	-	phage integrase family protein
819	 62.88	-1	843574..844101	+	175	146276877	-	Rsph17025_0827	-	hypothetical protein
820	 61.11	-2	844006..846471	-	821	146276878	-	Rsph17025_0828	-	hypothetical protein
821	 63.08	-1	846868..847257	+	129	146276879	-	Rsph17025_0829	-	transposase, IS4 family protein
822	 59.80	-2	847335..847640	+	101	146276880	-	Rsph17025_0830	-	hypothetical protein
823	 63.54	-1	847817..848905	+	362	146276881	-	Rsph17025_0831	-	phage integrase family protein
824	 74.09	+1	849065..850816	-	583	146276882	-	Rsph17025_0832	-	single-stranded-DNA-specific exonuclease RecJ
825	 69.46	0	850813..851778	-	321	146276883	glpX	Rsph17025_0833	-	fructose 1,6-bisphosphatase II
826	 70.94	0	851840..853126	-	428	146276884	-	Rsph17025_0834	-	homoserine dehydrogenase
827	 69.31	0	853580..854185	+	201	146276885	-	Rsph17025_0835	-	TetR family transcriptional regulator
828	 63.19	-1	854166..854741	-	191	146276886	-	Rsph17025_0836	-	hypothetical protein
829	 63.92	-1	854738..855283	-	181	146276887	-	Rsph17025_0837	-	hypothetical protein
830	 62.53	-1	855280..856971	-	563	146276888	-	Rsph17025_0838	-	hypothetical protein
831	 67.09	0	857292..858719	+	475	146276889	-	Rsph17025_0839	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
832	 71.04	0	858875..860839	+	654	146276890	dnaG	Rsph17025_0840	-	DNA primase
833	 64.42	-1	860981..862984	+	667	146276891	-	Rsph17025_0841	-	RNA polymerase sigma factor RpoD
834	 70.60	0	862996..863376	+	126	146276892	-	Rsph17025_0842	-	hypothetical protein
835	 63.89	-1	863647..864114	+	155	146276893	-	Rsph17025_0843	-	transcriptional regulator NrdR
836	 76.19	+2	864129..865199	+	356	146276894	-	Rsph17025_0844	-	riboflavin biosynthesis protein RibD
837	 65.97	0	865236..865664	-	142	146276895	-	Rsph17025_0845	-	glyoxalase/bleomycin resistance protein/dioxygenase
838	 66.89	0	865872..866768	+	298	146276896	-	Rsph17025_0846	-	thymidylate synthase
839	 70.21	0	866768..867247	+	159	146276897	-	Rsph17025_0847	-	dihydrofolate reductase
840	 65.68	0	867285..867689	+	134	146276898	-	Rsph17025_0848	-	membrane protein-like protein
841	 64.83	-1	867755..868081	+	108	146276899	-	Rsph17025_0849	-	arsenate reductase
842	 62.80	-1	868137..868343	-	68	146276900	-	Rsph17025_0850	-	cold-shock DNA-binding domain-containing protein
843	 65.48	0	868840..870780	-	646	146276901	-	Rsph17025_0851	-	threonyl-tRNA synthetase
844	 68.27	0	870934..871680	+	248	146276902	-	Rsph17025_0852	-	alpha/beta fold family hydrolase/acetyltransferase-like protein
845	 65.25	0	871733..873004	-	423	146276903	-	Rsph17025_0853	-	polyhydroxyalkanoate depolymerase, intracellular
846	 64.68	-1	873106..874914	+	602	146276904	-	Rsph17025_0854	-	poly(R)-hydroxyalkanoic acid synthase, class I
847	 63.73	-1	875040..875516	+	158	146276905	-	Rsph17025_0855	-	hypothetical protein
848	 63.24	-1	875643..876197	+	184	146276906	-	Rsph17025_0856	-	polyhydroxyalkonate synthesis repressor, PhaR
849	 66.30	0	876247..877614	-	455	146276907	-	Rsph17025_0857	-	aminotransferase class-III
850	 70.00	0	878160..878279	-	39	146276908	-	Rsph17025_0859	-	hypothetical protein
851	 67.34	0	878451..878747	-	98	146276909	-	Rsph17025_0860	-	hypothetical protein
852	 64.57	-1	878947..879519	+	190	146276910	-	Rsph17025_0861	-	transposase, IS4 family protein
853	 64.52	-1	879514..879792	-	92	146276911	-	Rsph17025_0862	-	hypothetical protein
854	 69.43	0	879850..881151	-	433	146276912	-	Rsph17025_0863	-	FAD dependent oxidoreductase
855	 66.89	0	881148..882503	-	451	146276913	-	Rsph17025_0864	-	glutamate--putrescine ligase
856	 67.70	0	882508..883185	-	225	146276914	-	Rsph17025_0865	-	glutamine amidotransferase class-I
857	 68.24	0	883246..884583	-	445	146276915	-	Rsph17025_0866	-	glutamate--putrescine ligase
858	 65.22	0	884588..885415	-	275	146276916	-	Rsph17025_0867	-	binding-protein-dependent transport systems inner membrane component
859	 66.33	0	885412..886293	-	293	146276917	-	Rsph17025_0868	-	binding-protein-dependent transport systems inner membrane component
860	 65.29	0	886334..887059	-	241	146276918	-	Rsph17025_0869	-	extracellular solute-binding protein
861	 68.77	0	887097..887906	-	269	146276919	-	Rsph17025_0870	-	ABC transporter related
862	 71.81	+1	888042..888527	-	161	146276920	-	Rsph17025_0871	-	hypothetical protein
863	 70.67	0	888547..889320	-	257	146276921	-	Rsph17025_0872	-	hypothetical protein
864	 65.27	0	889482..891125	-	547	146276922	-	Rsph17025_0873	-	CTP synthetase
865	 73.88	+1	891288..891911	-	207	146276923	secG	Rsph17025_0874	-	preprotein translocase subunit SecG
866	 69.68	0	892152..893444	+	430	146276924	-	Rsph17025_0875	-	adenylosuccinate synthetase
867	 65.04	0	893497..893742	+	81	146276925	-	Rsph17025_0876	-	hypothetical protein
868	 64.40	-1	893884..894456	-	190	146276926	-	Rsph17025_0877	-	transposase, IS4 family protein
869	 73.67	+1	894689..895816	-	375	146276927	-	Rsph17025_0878	-	hypothetical protein
870	 72.48	+1	895951..896655	+	234	146276928	-	Rsph17025_0879	-	thiamine pyrophosphokinase
68.34	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.