IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
680	 73.66	+1	693248..694735	+	495	146276738	murE	Rsph17025_0686	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
681	 73.24	+1	694826..696271	+	481	146276739	-	Rsph17025_0687	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
682	 65.47	0	696272..697354	+	360	146276740	-	Rsph17025_0688	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
683	 72.51	+1	697534..698046	+	170	146276741	-	Rsph17025_0689	-	transport-associated
684	 69.53	0	698151..699548	+	465	146276742	-	Rsph17025_0690	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
685	 71.52	0	699545..700039	+	164	146276743	-	Rsph17025_0691	-	glutathione-dependent formaldehyde-activating, GFA
686	 66.84	0	700155..701321	+	388	146276744	-	Rsph17025_0692	-	cell division protein FtsW
687	 72.33	+1	701323..702417	+	364	146276745	murG	Rsph17025_0693	-	N-acetylglucosaminyl transferase
688	 69.00	0	702414..703826	+	470	146276746	murC	Rsph17025_0694	-	UDP-N-acetylmuramate--L-alanine ligase
689	 70.16	0	703837..704094	+	85	146276747	-	Rsph17025_0695	-	hypothetical protein
690	 69.80	0	704091..705017	+	308	146276748	-	Rsph17025_0696	-	UDP-N-acetylenolpyruvoylglucosamine reductase
691	 69.37	0	705056..705979	+	307	146276749	-	Rsph17025_0697	-	D-alanine--D-alanine ligase
692	 72.24	+1	705967..706881	+	304	146276750	-	Rsph17025_0698	-	cell division protein FtsQ
693	 68.31	0	706878..708212	+	444	146276751	-	Rsph17025_0699	-	cell division protein FtsA
694	 70.29	0	708392..710047	+	551	146276752	-	Rsph17025_0700	-	cell division protein FtsZ
695	 68.06	0	710192..711196	+	334	146276753	lpxC	Rsph17025_0701	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
696	 64.87	0	711311..712147	+	278	146276754	-	Rsph17025_0702	-	TPR repeat-containing protein
697	 73.80	+1	712175..713815	+	546	146276755	-	Rsph17025_0703	-	DNA repair protein RecN
698	 72.52	+1	713823..714215	-	130	146276756	-	Rsph17025_0704	-	hypothetical protein
699	 71.18	0	714212..715585	-	457	146276757	-	Rsph17025_0705	-	FAD linked oxidase domain-containing protein
700	 69.05	0	715722..716351	-	209	146276758	-	Rsph17025_0706	-	hypothetical protein
701	 63.95	-1	716555..717253	-	232	146276759	-	Rsph17025_0707	-	methionine synthase
702	 73.46	+1	717409..718497	+	362	146276760	-	Rsph17025_0708	-	radical SAM domain-containing protein
703	 71.04	0	718631..719704	-	357	146276761	-	Rsph17025_0709	-	methionine synthase I
704	 67.29	0	719891..720211	-	106	146276762	-	Rsph17025_0710	-	hypothetical protein
705	 65.60	0	720393..721145	+	250	146276763	-	Rsph17025_0711	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
706	 65.00	0	721160..721399	+	79	146276764	-	Rsph17025_0712	-	phosphoribosylformylglycinamidine synthase, purS
707	 70.25	0	721572..722240	+	222	146276765	-	Rsph17025_0713	-	phosphoribosylformylglycinamidine synthase I
708	 66.67	0	722237..724051	+	604	146276766	-	Rsph17025_0714	-	integral membrane sensor signal transduction histidine kinase
709	 66.29	0	724061..725389	+	442	146276767	-	Rsph17025_0715	-	two component, sigma54 specific, Fis family transcriptional regulator
710	 68.47	0	725871..728480	+	869	146276768	-	Rsph17025_0716	-	ribonuclease
711	 68.61	0	728535..728843	-	102	146276769	-	Rsph17025_0717	-	SirA family protein
712	 66.53	0	728910..729656	+	248	146276770	-	Rsph17025_0718	-	cytochrome c biogenesis protein, transmembrane region
713	 70.78	0	729863..730081	-	72	146276771	-	Rsph17025_0719	-	hypothetical protein
714	 73.53	+1	730078..730281	-	67	146276772	-	Rsph17025_0720	-	hypothetical protein
715	 65.38	0	730281..731675	-	464	146276773	fumC	Rsph17025_0721	-	fumarate hydratase
716	 65.58	0	731844..732305	-	153	146276774	-	Rsph17025_0722	-	hypothetical protein
717	 72.30	+1	732407..733063	-	218	146276775	-	Rsph17025_0723	-	hypothetical protein
718	 60.55	-2	734141..734827	+	228	146276776	-	Rsph17025_0724	-	hypothetical protein
719	 55.97	-2	734889..737888	-	999	146276777	-	Rsph17025_0725	-	phage integrase family protein
720	 56.83	-2	737875..739368	-	497	146276778	-	Rsph17025_0726	-	phage integrase family protein
721	 66.67	0	740398..740763	-	121	146276779	-	Rsph17025_0727	-	hypothetical protein
722	 60.57	-2	741432..741710	-	92	146276780	-	Rsph17025_0728	-	hypothetical protein
723	 62.46	-1	741840..743123	+	427	146276781	-	Rsph17025_0729	-	transposase IS116/IS110/IS902 family protein
724	 66.67	0	743435..743935	+	166	146276782	-	Rsph17025_0730	-	hypothetical protein
725	 70.57	0	743932..745059	+	375	146276783	-	Rsph17025_0731	-	integrase catalytic subunit
726	 62.22	-1	745374..745778	+	134	146276784	-	Rsph17025_0732	-	hypothetical protein
727	 68.43	0	745857..747161	+	434	146276785	-	Rsph17025_0733	-	transposase IS66
728	 71.51	0	747237..747422	+	61	146276786	-	Rsph17025_0734	-	hypothetical protein
729	 65.04	0	747460..748506	+	348	146276787	-	Rsph17025_0735	-	transposase IS116/IS110/IS902 family protein
730	 67.00	0	748786..749388	+	200	146276788	-	Rsph17025_0736	-	plasmid pRiA4b ORF-3 family protein
731	 67.37	0	749488..749916	+	142	146276789	-	Rsph17025_0737	-	hypothetical protein
732	 63.10	-1	750038..750205	-	55	146276790	-	Rsph17025_0738	-	hypothetical protein
733	 64.73	-1	750290..750856	-	188	146276791	-	Rsph17025_0739	-	hypothetical protein
734	 62.95	-1	750857..751690	-	277	146276792	-	Rsph17025_0740	-	integrase catalytic subunit
735	 63.13	-1	751687..752082	-	131	146276793	-	Rsph17025_0741	-	transposase IS3/IS911 family protein
736	 67.89	0	752358..753743	-	461	146276794	-	Rsph17025_0742	-	chromate transporter
737	 68.71	0	753740..754573	-	277	146276795	-	Rsph17025_0743	-	rhodanese domain-containing protein
738	 68.16	0	754993..755394	-	133	146276796	-	Rsph17025_0744	-	rhodanese domain-containing protein
739	 64.67	-1	755399..756349	-	316	146276797	-	Rsph17025_0745	-	hypothetical protein
740	 65.42	0	756346..757065	-	239	146276798	-	Rsph17025_0746	-	hypothetical protein
741	 64.81	-1	757123..758040	-	305	146276799	-	Rsph17025_0747	-	rhodanese domain-containing protein
742	 68.32	0	758273..759058	-	261	146276800	-	Rsph17025_0748	-	ABC transporter related
743	 67.92	0	759055..759855	-	266	146276801	-	Rsph17025_0749	-	binding-protein-dependent transport systems inner membrane component
744	 68.07	0	759845..760699	-	284	146276802	-	Rsph17025_0750	-	binding-protein-dependent transport systems inner membrane component
745	 64.50	-1	760765..761874	-	369	146276803	-	Rsph17025_0751	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
746	 66.77	0	761894..762853	-	319	146276804	-	Rsph17025_0752	-	taurine dioxygenase
747	 66.55	0	763377..764243	+	288	146276805	-	Rsph17025_0753	-	hypothetical protein
748	 68.31	0	764290..766116	-	608	146276806	-	Rsph17025_0754	-	SufS subfamily cysteine desulfurase
749	 64.51	-1	766091..767017	-	308	146276807	-	Rsph17025_0755	-	hypothetical protein
750	 68.15	0	767072..768016	-	314	146276808	-	Rsph17025_0756	-	Serine O-acetyltransferase
751	 67.11	0	768042..768491	-	149	146276809	-	Rsph17025_0757	-	rhodanese domain-containing protein
752	 66.50	0	768966..769550	+	194	146276810	-	Rsph17025_0758	-	hypothetical protein
753	 70.47	0	769595..770962	+	455	146276811	-	Rsph17025_0759	-	hypothetical protein
754	 67.33	0	771065..772873	+	602	146276812	-	Rsph17025_0760	-	sulfoacetaldehyde acetyltransferase
755	 69.33	0	773004..774242	-	412	146276813	-	Rsph17025_0761	-	binding-protein-dependent transport systems inner membrane component
756	 67.62	0	774239..775075	-	278	146276814	-	Rsph17025_0762	-	ABC transporter related
757	 64.26	-1	775121..776116	-	331	146276815	-	Rsph17025_0763	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
758	 68.14	0	776699..777649	+	316	146276816	-	Rsph17025_0764	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
759	 66.79	0	777660..778457	+	265	146276817	-	Rsph17025_0765	-	binding-protein-dependent transport systems inner membrane component
760	 71.00	0	778457..779218	+	253	146276818	-	Rsph17025_0766	-	ABC transporter related
761	 69.23	0	779401..782172	+	923	146276819	-	Rsph17025_0767	-	molybdopterin oxidoreductase Fe4S4 region
762	 70.31	0	782169..782882	+	237	146276820	-	Rsph17025_0768	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
763	 72.97	+1	782882..783769	+	295	146276821	-	Rsph17025_0769	-	DMSO reductase anchor subunit (DmsC)
764	 68.14	0	783835..785187	-	450	146276822	-	Rsph17025_0770	-	coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein
765	 67.73	0	785225..785788	-	187	146276823	-	Rsph17025_0771	-	NADPH-dependent FMN reductase
766	 72.35	+1	785987..787342	-	451	146276824	-	Rsph17025_0772	-	nitrogenase
767	 73.05	+1	787342..788703	-	453	146276825	-	Rsph17025_0773	-	oxidoreductase/nitrogenase, component 1
768	 67.81	0	788705..789577	-	290	146276826	-	Rsph17025_0774	-	nitrogenase
769	 64.20	-1	789628..790842	-	404	146276827	-	Rsph17025_0775	-	radical SAM domain-containing protein
770	 67.97	0	791265..792572	+	435	146276828	-	Rsph17025_0776	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
771	 70.90	0	792661..793629	+	322	146276829	-	Rsph17025_0777	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
772	 70.36	0	793642..794454	+	270	146276830	-	Rsph17025_0778	-	binding-protein-dependent transport systems inner membrane component
773	 70.13	0	794463..795212	+	249	146276831	-	Rsph17025_0779	-	ABC transporter related
774	 72.28	+1	795247..796386	-	379	146276832	-	Rsph17025_0780	-	cystathionine gamma-synthase
775	 71.57	0	796379..796888	-	169	146276833	-	Rsph17025_0781	-	OsmC family protein
776	 70.15	0	796885..798834	-	649	146276834	-	Rsph17025_0782	-	acetate--CoA ligase
777	 66.67	0	798899..799690	-	263	146276835	-	Rsph17025_0783	-	YaeC family lipoprotein
778	 68.77	0	799724..800389	-	221	146276836	-	Rsph17025_0784	-	binding-protein-dependent transport systems inner membrane component
779	 69.56	0	800379..801656	-	425	146276837	-	Rsph17025_0785	-	ABC transporter related
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.