IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
627	 68.92	0	630426..630824	+	132	146276685	-	Rsph17025_0633	-	hypothetical protein
628	 74.49	+1	630837..632396	-	519	146276686	-	Rsph17025_0634	-	exodeoxyribonuclease VII, large subunit
629	 72.13	+1	632501..633763	+	420	146276687	-	Rsph17025_0635	-	phosphoribosylamine--glycine ligase
630	 64.68	-1	633871..635130	+	419	146276688	-	Rsph17025_0636	-	aspartate kinase
631	 68.27	0	635155..637398	+	747	146276689	-	Rsph17025_0637	-	phosphoenolpyruvate-protein phosphotransferase PtsP
632	 67.01	0	637590..638771	+	393	146276690	-	Rsph17025_0638	-	O-succinylhomoserine sulfhydrylase
633	 66.76	0	638864..639943	+	359	146276691	-	Rsph17025_0639	-	putative GTP cyclohydrolase
634	 65.70	0	640168..641622	+	484	146276692	-	Rsph17025_0640	-	cation transporter
635	 73.56	+1	641638..643407	-	589	146276693	-	Rsph17025_0641	-	peptidoglycan binding domain-containing protein
636	 65.48	0	643532..644455	+	307	146276694	glyQ	Rsph17025_0642	-	glycyl-tRNA synthetase subunit alpha
637	 67.94	0	644452..644922	+	156	146276695	-	Rsph17025_0643	-	hypothetical protein
638	 67.94	0	644922..647198	+	758	146276696	-	Rsph17025_0644	-	glycine--tRNA ligase
639	 71.36	0	647317..649875	+	852	146276697	-	Rsph17025_0645	-	pyruvate phosphate dikinase
640	 68.70	0	650081..650767	+	228	146276698	-	Rsph17025_0646	-	cell wall hydrolase, SleB
641	 72.44	+1	650835..651770	+	311	146276699	-	Rsph17025_0647	-	dihydroneopterin aldolase
642	 72.25	+1	651816..652853	+	345	146276700	-	Rsph17025_0648	-	dihydropteroate synthase
643	 70.39	0	652850..654193	+	447	146276701	-	Rsph17025_0649	-	phosphoglucosamine mutase
644	 64.84	-1	654287..654505	+	72	146276702	-	Rsph17025_0650	-	hypothetical protein
645	 64.13	-1	654567..655589	-	340	146276703	-	Rsph17025_0651	-	ketol-acid reductoisomerase
646	 68.64	0	655720..656175	+	151	146276704	-	Rsph17025_0652	-	AsnC family transcriptional regulator
647	 71.24	0	656172..656630	+	152	146276705	-	Rsph17025_0653	-	AsnC family transcriptional regulator
648	 70.04	0	656783..657910	+	375	146276706	-	Rsph17025_0654	-	aminotransferase, class V
649	 72.00	+1	657914..659113	-	399	146276707	-	Rsph17025_0655	-	2-octaprenyl-6-methoxyphenyl hydroxylase
650	 64.50	-1	659165..659395	-	76	146276708	-	Rsph17025_0656	-	hypothetical protein
651	 69.29	0	659477..660124	-	215	146276709	-	Rsph17025_0657	-	pyrimidine 5'-nucleotidase
652	 67.14	0	660241..660876	+	211	146276710	-	Rsph17025_0658	-	GntR family transcriptional regulator
653	 71.44	0	660884..662770	-	628	146276711	-	Rsph17025_0659	-	general secretion pathway protein E
654	 69.60	0	662939..663721	-	260	146276712	-	Rsph17025_0660	-	ErfK/YbiS/YcfS/YnhG family protein
655	 69.59	0	663937..665100	-	387	146276713	-	Rsph17025_0661	-	carbamoyl phosphate synthase small subunit
656	 67.83	0	665308..665736	+	142	146276714	-	Rsph17025_0662	-	GatB/Yqey domain-containing protein
657	 72.16	+1	665753..666262	-	169	146276715	-	Rsph17025_0663	-	integral membrane protein-like protein
658	 63.20	-1	666285..667985	-	566	146276716	-	Rsph17025_0664	-	cytochrome-c oxidase
659	 70.47	0	668301..668957	-	218	146276717	lipB	Rsph17025_0665	-	lipoyltransferase
660	 66.21	0	669586..670689	+	367	146276718	-	Rsph17025_0666	-	spermidine/putrescine ABC transporter ATPase subunit
661	 66.20	0	670761..671834	+	357	146276719	-	Rsph17025_0667	-	spermidine/putrescine-binding periplasmic protein-like protein
662	 66.82	0	671884..673158	+	424	146276720	-	Rsph17025_0668	-	binding-protein-dependent transport systems inner membrane component
663	 64.03	-1	673236..674144	+	302	146276721	-	Rsph17025_0669	-	binding-protein-dependent transport systems inner membrane component
664	 58.33	-2	674324..674491	+	55	146276722	rpmG	Rsph17025_0670	-	50S ribosomal protein L33
665	 63.97	-1	674696..675436	-	246	146276723	-	Rsph17025_0671	-	hypothetical protein
666	 72.29	+1	675569..675799	-	76	146276724	-	Rsph17025_0672	-	hypothetical protein
667	 69.56	0	675921..676853	+	310	146276725	-	Rsph17025_0673	-	LysR family transcriptional regulator
668	 71.98	+1	676858..677817	-	319	146276726	-	Rsph17025_0674	-	alcohol dehydrogenase
669	 64.46	-1	678181..678543	+	120	146276727	-	Rsph17025_0675	-	XRE family transcriptional regulator
670	 67.29	0	678633..679433	+	266	146276728	-	Rsph17025_0676	-	inositol monophosphatase
671	 67.50	0	679502..682966	-	1154	146276729	-	Rsph17025_0677	-	pyruvate carboxylase
672	 67.22	0	683147..685498	+	783	146276730	-	Rsph17025_0678	-	UvrD/REP helicase
673	 73.91	+1	685502..686647	-	381	146276731	-	Rsph17025_0679	-	benzoate transporter
674	 65.28	0	687212..687427	-	71	146276732	-	Rsph17025_0680	-	hypothetical protein
675	 70.79	0	687698..688765	+	355	146276733	-	Rsph17025_0681	-	septum formation inhibitor-activating ATPase-like protein
676	 66.07	0	689575..690081	+	168	146276734	-	Rsph17025_0682	-	cell division protein MraZ
677	 73.39	+1	690085..691080	+	331	146276735	-	Rsph17025_0683	-	S-adenosyl-methyltransferase MraW
678	 68.89	0	691081..691440	+	119	146276736	-	Rsph17025_0684	-	hypothetical protein
679	 69.12	0	691437..693230	+	597	146276737	-	Rsph17025_0685	-	peptidoglycan glycosyltransferase
680	 73.66	+1	693248..694735	+	495	146276738	murE	Rsph17025_0686	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
681	 73.24	+1	694826..696271	+	481	146276739	-	Rsph17025_0687	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
682	 65.47	0	696272..697354	+	360	146276740	-	Rsph17025_0688	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
683	 72.51	+1	697534..698046	+	170	146276741	-	Rsph17025_0689	-	transport-associated
684	 69.53	0	698151..699548	+	465	146276742	-	Rsph17025_0690	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
685	 71.52	0	699545..700039	+	164	146276743	-	Rsph17025_0691	-	glutathione-dependent formaldehyde-activating, GFA
686	 66.84	0	700155..701321	+	388	146276744	-	Rsph17025_0692	-	cell division protein FtsW
687	 72.33	+1	701323..702417	+	364	146276745	murG	Rsph17025_0693	-	N-acetylglucosaminyl transferase
688	 69.00	0	702414..703826	+	470	146276746	murC	Rsph17025_0694	-	UDP-N-acetylmuramate--L-alanine ligase
689	 70.16	0	703837..704094	+	85	146276747	-	Rsph17025_0695	-	hypothetical protein
690	 69.80	0	704091..705017	+	308	146276748	-	Rsph17025_0696	-	UDP-N-acetylenolpyruvoylglucosamine reductase
691	 69.37	0	705056..705979	+	307	146276749	-	Rsph17025_0697	-	D-alanine--D-alanine ligase
692	 72.24	+1	705967..706881	+	304	146276750	-	Rsph17025_0698	-	cell division protein FtsQ
693	 68.31	0	706878..708212	+	444	146276751	-	Rsph17025_0699	-	cell division protein FtsA
694	 70.29	0	708392..710047	+	551	146276752	-	Rsph17025_0700	-	cell division protein FtsZ
695	 68.06	0	710192..711196	+	334	146276753	lpxC	Rsph17025_0701	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
696	 64.87	0	711311..712147	+	278	146276754	-	Rsph17025_0702	-	TPR repeat-containing protein
697	 73.80	+1	712175..713815	+	546	146276755	-	Rsph17025_0703	-	DNA repair protein RecN
698	 72.52	+1	713823..714215	-	130	146276756	-	Rsph17025_0704	-	hypothetical protein
699	 71.18	0	714212..715585	-	457	146276757	-	Rsph17025_0705	-	FAD linked oxidase domain-containing protein
700	 69.05	0	715722..716351	-	209	146276758	-	Rsph17025_0706	-	hypothetical protein
701	 63.95	-1	716555..717253	-	232	146276759	-	Rsph17025_0707	-	methionine synthase
702	 73.46	+1	717409..718497	+	362	146276760	-	Rsph17025_0708	-	radical SAM domain-containing protein
703	 71.04	0	718631..719704	-	357	146276761	-	Rsph17025_0709	-	methionine synthase I
704	 67.29	0	719891..720211	-	106	146276762	-	Rsph17025_0710	-	hypothetical protein
705	 65.60	0	720393..721145	+	250	146276763	-	Rsph17025_0711	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
706	 65.00	0	721160..721399	+	79	146276764	-	Rsph17025_0712	-	phosphoribosylformylglycinamidine synthase, purS
707	 70.25	0	721572..722240	+	222	146276765	-	Rsph17025_0713	-	phosphoribosylformylglycinamidine synthase I
708	 66.67	0	722237..724051	+	604	146276766	-	Rsph17025_0714	-	integral membrane sensor signal transduction histidine kinase
709	 66.29	0	724061..725389	+	442	146276767	-	Rsph17025_0715	-	two component, sigma54 specific, Fis family transcriptional regulator
710	 68.47	0	725871..728480	+	869	146276768	-	Rsph17025_0716	-	ribonuclease
711	 68.61	0	728535..728843	-	102	146276769	-	Rsph17025_0717	-	SirA family protein
712	 66.53	0	728910..729656	+	248	146276770	-	Rsph17025_0718	-	cytochrome c biogenesis protein, transmembrane region
713	 70.78	0	729863..730081	-	72	146276771	-	Rsph17025_0719	-	hypothetical protein
714	 73.53	+1	730078..730281	-	67	146276772	-	Rsph17025_0720	-	hypothetical protein
715	 65.38	0	730281..731675	-	464	146276773	fumC	Rsph17025_0721	-	fumarate hydratase
716	 65.58	0	731844..732305	-	153	146276774	-	Rsph17025_0722	-	hypothetical protein
717	 72.30	+1	732407..733063	-	218	146276775	-	Rsph17025_0723	-	hypothetical protein
718	 60.55	-2	734141..734827	+	228	146276776	-	Rsph17025_0724	-	hypothetical protein
719	 55.97	-2	734889..737888	-	999	146276777	-	Rsph17025_0725	-	phage integrase family protein
720	 56.83	-2	737875..739368	-	497	146276778	-	Rsph17025_0726	-	phage integrase family protein
721	 66.67	0	740398..740763	-	121	146276779	-	Rsph17025_0727	-	hypothetical protein
722	 60.57	-2	741432..741710	-	92	146276780	-	Rsph17025_0728	-	hypothetical protein
723	 62.46	-1	741840..743123	+	427	146276781	-	Rsph17025_0729	-	transposase IS116/IS110/IS902 family protein
724	 66.67	0	743435..743935	+	166	146276782	-	Rsph17025_0730	-	hypothetical protein
725	 70.57	0	743932..745059	+	375	146276783	-	Rsph17025_0731	-	integrase catalytic subunit
726	 62.22	-1	745374..745778	+	134	146276784	-	Rsph17025_0732	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.