IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
334	 71.32	0	333924..334697	-	257	146276392	-	Rsph17025_0340	-	uroporphyrin-III C-methyltransferase
335	 64.29	-1	334831..335292	+	153	146276393	-	Rsph17025_0341	-	AsnC family transcriptional regulator
336	 70.92	0	335399..336622	-	407	146276394	-	Rsph17025_0342	-	cytochrome P450
337	 71.68	0	336878..337615	-	245	146276395	-	Rsph17025_0343	-	Triose-phosphate isomerase
338	 63.87	-1	337684..338040	-	118	146276396	-	Rsph17025_0344	-	iron-sulfur cluster assembly accessory protein
339	 63.36	-1	338161..338523	-	120	146276397	-	Rsph17025_0345	-	hypothetical protein
340	 70.09	0	338715..339971	+	418	146276398	-	Rsph17025_0346	-	metallophosphoesterase
341	 73.76	+1	339971..343354	+	1127	146276399	-	Rsph17025_0347	-	hypothetical protein
342	 68.31	0	343399..344496	-	365	146276400	-	Rsph17025_0348	-	translation-associated GTPase
343	 70.45	0	344766..345557	+	263	146276401	trpA	Rsph17025_0349	-	tryptophan synthase subunit alpha
344	 66.84	0	345785..346948	+	387	146276402	-	Rsph17025_0350	-	L-lactate dehydrogenase (cytochrome)
345	 63.56	-1	347086..347697	+	203	146276403	-	Rsph17025_0351	-	50S ribosomal protein L25/general stress protein Ctc
346	 69.76	0	347844..348521	+	225	146276404	-	Rsph17025_0352	-	peptidyl-tRNA hydrolase
347	 70.33	0	348531..349295	-	254	146276405	ppnK	Rsph17025_0353	-	inorganic polyphosphate/ATP-NAD kinase
348	 68.36	0	349462..350757	+	431	146276406	-	Rsph17025_0354	-	serine hydroxymethyltransferase
349	 70.97	0	350797..351168	-	123	146276407	-	Rsph17025_0355	-	hypothetical protein
350	 69.78	0	351262..352032	+	256	146276408	-	Rsph17025_0356	-	alpha/beta hydrolase fold
351	 64.12	-1	352071..352580	-	169	146276409	-	Rsph17025_0357	-	cytochrome B561
352	 61.02	-2	352610..352786	-	58	146276410	-	Rsph17025_0358	-	hypothetical protein
353	 69.82	0	353146..354507	-	453	146276411	-	Rsph17025_0359	-	DEAD/DEAH box helicase domain-containing protein
354	 67.90	0	354767..355498	-	243	146276412	-	Rsph17025_0360	-	hemolysin-type calcium-binding region
355	 67.33	0	355681..359010	-	1109	146276413	carB	Rsph17025_0361	-	carbamoyl phosphate synthase large subunit
356	 70.50	0	359165..360337	+	390	146276414	-	Rsph17025_0362	-	para-aminobenzoate synthase component I
357	 74.04	+1	360280..360957	+	225	146276415	-	Rsph17025_0363	-	hypothetical protein
358	 67.74	0	360997..361650	+	217	146276416	-	Rsph17025_0364	-	abortive infection protein
359	 66.50	0	361831..363606	+	591	146276417	aspS	Rsph17025_0365	-	aspartyl-tRNA synthetase
360	 69.93	0	363610..364314	+	234	146276418	-	Rsph17025_0366	-	GCN5-related N-acetyltransferase
361	 72.56	+1	364325..365020	-	231	146276419	-	Rsph17025_0367	-	response regulator receiver protein
362	 65.43	0	365171..365575	+	134	146276420	-	Rsph17025_0368	-	methylmalonyl-CoA epimerase
363	 68.79	0	365572..365853	+	93	146276421	-	Rsph17025_0369	-	hypothetical protein
364	 67.82	0	365894..366589	-	231	146276422	-	Rsph17025_0370	-	hypothetical protein
365	 72.37	+1	366586..367164	-	192	146276423	-	Rsph17025_0371	-	nitroreductase
366	 64.53	-1	367423..369012	+	529	146276424	-	Rsph17025_0372	-	extracellular solute-binding protein
367	 67.69	0	369013..370083	+	356	146276425	-	Rsph17025_0373	-	binding-protein-dependent transport systems inner membrane component
368	 70.87	0	370080..370982	+	300	146276426	-	Rsph17025_0374	-	binding-protein-dependent transport systems inner membrane component
369	 71.03	0	371104..371928	+	274	146276427	-	Rsph17025_0375	-	ABC transporter related
370	 71.43	0	371928..372683	+	251	146276428	-	Rsph17025_0376	-	ABC transporter related
371	 70.32	0	372680..373747	+	355	146276429	-	Rsph17025_0377	-	membrane dipeptidase
372	 71.77	0	373870..374967	-	365	146276430	-	Rsph17025_0378	-	histone deacetylase superfamily protein
373	 70.59	0	375027..375281	+	84	146276431	-	Rsph17025_0379	-	hypothetical protein
374	 69.71	0	375322..376242	-	306	146276432	-	Rsph17025_0380	-	beta-lactamase domain-containing protein
375	 67.53	0	376348..376809	-	153	146276433	-	Rsph17025_0381	-	hypothetical protein
376	 68.40	0	376918..378243	+	441	146276434	gltX	Rsph17025_0382	-	glutamyl-tRNA synthetase
377	 70.19	0	378244..378612	-	122	146276435	-	Rsph17025_0383	-	hypothetical protein
378	 72.06	+1	378700..380145	-	481	146276436	-	Rsph17025_0384	-	cobyric acid synthase
379	 71.14	0	380317..381321	+	334	146276437	-	Rsph17025_0385	-	LysR family transcriptional regulator
380	 55.56	-2	381420..381500	+	26	146276438	-	Rsph17025_0386	-	coenzyme PQQ biosynthesis protein A
381	 71.98	+1	381519..382421	+	300	146276439	-	Rsph17025_0387	-	pyrroloquinoline quinone biosynthesis protein PqqB
382	 67.84	0	382418..383185	+	255	146276440	-	Rsph17025_0388	-	pyrroloquinoline quinone biosynthesis protein PqqC
383	 70.03	0	383182..383478	+	98	146276441	-	Rsph17025_0389	-	coenzyme PQQ synthesis D
384	 70.34	0	383478..384620	+	380	146276442	-	Rsph17025_0390	-	pyrroloquinoline quinone biosynthesis protein PqqE
385	 74.67	+1	384673..385647	-	324	146276443	-	Rsph17025_0391	-	aminotransferase, class I and II
386	 76.73	+2	385657..386481	-	274	146276444	-	Rsph17025_0392	-	hypothetical protein
387	 72.89	+1	386478..386879	-	133	146276445	-	Rsph17025_0393	-	hypothetical protein
388	 66.86	0	387213..388232	-	339	146276446	-	Rsph17025_0394	-	endonuclease/exonuclease/phosphatase
389	 70.32	0	388233..388916	-	227	146276447	-	Rsph17025_0395	-	heat shock protein DnaJ domain-containing protein
390	 70.47	0	388948..389499	-	183	146276448	-	Rsph17025_0396	-	GCN5-related N-acetyltransferase
391	 69.46	0	389496..391037	-	513	146276449	-	Rsph17025_0397	-	Ppx/GppA phosphatase
392	 67.40	0	391168..393357	-	729	146276450	-	Rsph17025_0398	-	polyphosphate kinase
393	 73.27	+1	393417..394097	-	226	146276451	-	Rsph17025_0399	-	chromosomal replication initiator, DnaA
394	 67.60	0	394094..395167	-	357	146276452	-	Rsph17025_0400	-	hypothetical protein
395	 65.99	0	395400..396737	+	445	146276453	-	Rsph17025_0401	-	prolyl-tRNA synthetase
396	 68.38	0	396871..398157	+	428	146276454	-	Rsph17025_0402	-	LolC/E family lipoprotein releasing system, transmembrane protein
397	 73.04	+1	398150..398824	+	224	146276455	-	Rsph17025_0403	-	ABC transporter related
398	 70.77	0	398883..399272	+	129	146276456	-	Rsph17025_0404	-	hypothetical protein
399	 70.12	0	399335..401653	+	772	146276457	-	Rsph17025_0405	-	RNA-binding S1 domain-containing protein
400	 69.79	0	401810..403024	+	404	146276458	-	Rsph17025_0406	-	mannonate dehydratase
401	 66.27	0	403168..405159	-	663	146276459	-	Rsph17025_0407	-	DNA topoisomerase IV subunit B
402	 72.41	+1	405391..407097	+	568	146276460	-	Rsph17025_0408	-	regulatory protein, LuxR
403	 66.37	0	407339..408355	+	338	146276461	-	Rsph17025_0409	-	hypothetical protein
404	 71.36	0	408359..408571	+	70	146276462	-	Rsph17025_0410	-	hypothetical protein
405	 68.65	0	408622..409983	+	453	146276463	-	Rsph17025_0411	-	MATE efflux family protein
406	 66.83	0	410028..411230	-	400	146276464	-	Rsph17025_0412	-	aspartate aminotransferase
407	 70.43	0	411338..411736	+	132	146276465	-	Rsph17025_0413	-	helix-turn-helix domain-containing protein
408	 66.30	0	411733..412002	+	89	146276466	-	Rsph17025_0414	-	hypothetical protein
409	 62.05	-1	412096..412593	+	165	146276467	-	Rsph17025_0415	-	MarR family transcriptional regulator
410	 66.75	0	412755..413888	-	377	146276468	-	Rsph17025_0416	-	polysaccharide export protein
411	 68.17	0	414376..414972	+	198	146276469	-	Rsph17025_0417	-	riboflavin synthase subunit alpha
412	 73.80	+1	414974..415534	+	186	146276470	-	Rsph17025_0418	-	hypothetical protein
413	 64.99	0	415516..416589	-	357	146276471	-	Rsph17025_0419	-	hypothetical protein
414	 67.30	0	416743..417846	+	367	146276472	-	Rsph17025_0420	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
415	 69.27	0	417850..418386	+	178	146276473	-	Rsph17025_0421	-	6,7-dimethyl-8-ribityllumazine synthase
416	 66.67	0	418383..418856	+	157	146276474	-	Rsph17025_0422	-	NusB antitermination factor
417	 62.93	-1	419101..419421	+	106	146276475	-	Rsph17025_0423	-	hypothetical protein
418	 61.97	-1	419623..420495	+	290	146276476	-	Rsph17025_0424	-	hypothetical protein
419	 67.86	0	420830..421333	+	167	146276477	-	Rsph17025_0425	-	hypothetical protein
420	 68.47	0	421334..421555	-	73	146276478	-	Rsph17025_0426	-	hypothetical protein
421	 67.90	0	421668..422153	+	161	146276479	-	Rsph17025_0427	-	GCN5-related N-acetyltransferase
422	 55.87	-2	422485..423021	+	178	146276480	-	Rsph17025_0428	-	phage-associated protein-like protein
423	 61.51	-1	424113..424364	-	83	146276481	-	Rsph17025_0429	-	hypothetical protein
424	 68.38	0	424552..424842	+	96	146276482	-	Rsph17025_0430	-	hypothetical protein
425	 68.38	0	424866..426437	-	523	146276483	-	Rsph17025_0431	-	transposase IS66
426	 68.08	0	426506..426859	-	117	146276484	-	Rsph17025_0432	-	IS66 Orf2 family protein
427	 67.61	0	426856..427278	-	140	146276485	-	Rsph17025_0433	-	transposase IS3/IS911 family protein
428	 68.87	0	427602..427919	+	105	146276486	-	Rsph17025_0434	-	hypothetical protein
429	 70.72	0	427909..428871	+	320	146276487	-	Rsph17025_0435	-	hypothetical protein
430	 58.89	-2	429280..430128	+	282	146276488	-	Rsph17025_0436	-	hypothetical protein
431	 65.26	0	430591..431517	+	308	146276489	-	Rsph17025_0437	-	hypothetical protein
432	 67.76	0	431580..432038	+	152	146276490	-	Rsph17025_0438	-	hypothetical protein
433	 68.68	0	432100..432696	+	198	146276491	-	Rsph17025_0439	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.