IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
269	 70.10	0	262940..264394	-	484	146276327	-	Rsph17025_0271	-	two component, sigma54 specific, Fis family transcriptional regulator
270	 69.89	0	264391..265011	-	206	146276328	-	Rsph17025_0272	-	hypothetical protein
271	 66.09	0	265086..266978	-	630	146276329	-	Rsph17025_0273	-	AMP-dependent synthetase and ligase
272	 68.42	0	267140..269419	-	759	146276330	-	Rsph17025_0274	-	malic enzyme
273	 71.50	0	269585..269977	+	130	146276331	-	Rsph17025_0275	-	cytidine deaminase
274	 71.94	+1	269979..271286	+	435	146276332	deoA	Rsph17025_0276	-	thymidine phosphorylase
275	 72.77	+1	271286..272482	+	398	146276333	-	Rsph17025_0277	-	phosphopentomutase
276	 68.60	0	272479..273462	+	327	146276334	-	Rsph17025_0278	-	adenosine deaminase
277	 63.51	-1	273455..274087	+	210	146276335	-	Rsph17025_0279	-	uracil phosphoribosyltransferase
278	 75.78	+2	274153..275085	+	310	146276336	-	Rsph17025_0280	-	sporulation domain-containing protein
279	 70.49	0	275207..276226	-	339	146276337	-	Rsph17025_0281	-	hypothetical protein
280	 67.15	0	276310..277956	-	548	146276338	-	Rsph17025_0282	-	AMP-dependent synthetase and ligase
281	 70.63	0	278056..278988	+	310	146276339	-	Rsph17025_0283	-	hypothetical protein
282	 71.90	+1	279006..279635	-	209	146276340	-	Rsph17025_0284	-	methyltransferase type 11
283	 70.43	0	279745..280647	-	300	146276341	-	Rsph17025_0285	-	GntR family transcriptional regulator
284	 67.98	0	280769..281761	+	330	146276342	-	Rsph17025_0286	-	alcohol dehydrogenase
285	 69.93	0	281852..283354	+	500	146276343	-	Rsph17025_0287	-	Altronate dehydratase
286	 72.74	+1	283430..285223	+	597	146276344	-	Rsph17025_0288	-	integral membrane sensor signal transduction histidine kinase
287	 73.33	+1	285220..286539	+	439	146276345	-	Rsph17025_0289	-	two component, sigma54 specific, Fis family transcriptional regulator
288	 66.67	0	286749..287702	+	317	146276346	-	Rsph17025_0290	-	TRAP transporter solute receptor TAXI family protein
289	 68.47	0	287812..289920	+	702	146276347	-	Rsph17025_0291	-	TRAP transporter, 4TM/12TM fusion protein
290	 73.71	+1	289917..290285	+	122	146276348	-	Rsph17025_0292	-	hypothetical protein
291	 69.79	0	290305..291585	-	426	146276349	-	Rsph17025_0293	-	guanine deaminase
292	 68.26	0	291715..293094	+	459	146276350	-	Rsph17025_0294	-	magnesium transporter
293	 72.87	+1	293091..293654	+	187	146276351	-	Rsph17025_0295	-	5-formyltetrahydrofolate cyclo-ligase
294	 65.37	0	293651..294961	-	436	146276352	-	Rsph17025_0296	-	ATPase with chaperone activity-like protein
295	 66.67	0	294983..295474	-	163	146276353	-	Rsph17025_0297	-	hypothetical protein
296	 66.78	0	295489..296334	-	281	146276354	-	Rsph17025_0298	-	hypothetical protein
297	 68.08	0	296373..296939	-	188	146276355	-	Rsph17025_0299	-	TPR repeat-containing protein
298	 66.26	0	296946..297917	-	323	146276356	-	Rsph17025_0300	-	type II secretion system protein
299	 64.29	-1	297922..298890	-	322	146276357	-	Rsph17025_0301	-	type II secretion system protein
300	 67.15	0	298898..300352	-	484	146276358	-	Rsph17025_0302	-	type II secretion system protein E
301	 66.75	0	300373..301644	-	423	146276359	-	Rsph17025_0303	-	ATPase involved in chromosome partitioning-like protein
302	 65.41	0	301864..302502	-	212	146276360	-	Rsph17025_0304	-	OmpA/MotB domain-containing protein
303	 66.38	0	302506..303891	-	461	146276361	-	Rsph17025_0305	-	type II and III secretion system protein
304	 71.43	0	304084..304965	-	293	146276362	-	Rsph17025_0306	-	lytic transglycosylase, catalytic
305	 56.37	-2	305315..305518	+	67	146276363	-	Rsph17025_0307	-	hypothetical protein
306	 57.35	-2	305685..305888	+	67	146276364	-	Rsph17025_0308	-	hypothetical protein
307	 64.48	-1	305961..306785	+	274	146276365	-	Rsph17025_0309	-	Flp pilus assembly protein CpaB-like protein
308	 68.04	0	307200..307490	+	96	146276366	-	Rsph17025_0310	-	hypothetical protein
309	 60.89	-2	307708..307932	+	74	146276367	-	Rsph17025_0311	-	hypothetical protein
310	 66.78	0	308315..309178	+	287	146276368	-	Rsph17025_0313	-	hypothetical protein
311	 67.04	0	309303..310115	-	270	146276369	-	Rsph17025_0314	-	transposase
312	 67.85	0	311797..312303	+	168	146276370	-	Rsph17025_0316	-	hypothetical protein
313	 62.04	-1	312309..312632	+	107	146276371	-	Rsph17025_0317	-	hypothetical protein
314	 64.58	-1	313952..314335	+	127	146276372	-	Rsph17025_0320	-	hypothetical protein
315	 69.94	0	314742..315749	+	335	146276373	-	Rsph17025_0321	-	tRNA-dihydrouridine synthase A
316	 70.09	0	315835..316653	+	272	146276374	-	Rsph17025_0322	-	hypothetical protein
317	 67.00	0	316811..318301	-	496	146276375	-	Rsph17025_0323	-	replicative DNA helicase
318	 68.38	0	318570..319268	-	232	146276376	pyrE	Rsph17025_0324	-	orotate phosphoribosyltransferase
319	 71.47	0	319311..320351	-	346	146276377	-	Rsph17025_0325	-	dihydroorotase
320	 74.05	+1	320448..320975	+	175	146276378	-	Rsph17025_0326	-	metal dependent phosphohydrolase
321	 70.05	0	321139..322053	+	304	146276379	-	Rsph17025_0327	-	ATPase
322	 72.35	+1	322158..323354	+	398	146276380	-	Rsph17025_0328	-	VWA containing CoxE family protein
323	 71.10	0	323496..323924	+	142	146276381	-	Rsph17025_0329	-	hypothetical protein
324	 72.64	+1	324174..326366	+	730	146276382	-	Rsph17025_0330	-	OmpA/MotB domain-containing protein
325	 73.25	+1	326455..327426	+	323	146276383	-	Rsph17025_0331	-	hypothetical protein
326	 74.48	+1	327426..328436	+	336	146276384	-	Rsph17025_0332	-	molybdopterin binding domain-containing protein
327	 63.59	-1	328481..329065	-	194	146276385	infC	Rsph17025_0333	-	translation initiation factor IF-3
328	 75.16	+1	329188..329823	+	211	146276386	-	Rsph17025_0334	-	hypothetical protein
329	 65.30	0	329915..330721	-	268	146276387	-	Rsph17025_0335	-	oxidoreductase FAD-binding subunit
330	 68.14	0	330784..331191	-	135	146276388	-	Rsph17025_0336	-	hypothetical protein
331	 68.39	0	331188..331943	-	251	146276389	-	Rsph17025_0337	-	phosphoadenosine phosphosulfate reductase
332	 66.25	0	331933..333603	-	556	146276390	-	Rsph17025_0338	-	nitrite/sulfite reductase hemoprotein beta subunit
333	 70.26	0	333622..333927	-	101	146276391	-	Rsph17025_0339	-	hypothetical protein
334	 71.32	0	333924..334697	-	257	146276392	-	Rsph17025_0340	-	uroporphyrin-III C-methyltransferase
335	 64.29	-1	334831..335292	+	153	146276393	-	Rsph17025_0341	-	AsnC family transcriptional regulator
336	 70.92	0	335399..336622	-	407	146276394	-	Rsph17025_0342	-	cytochrome P450
337	 71.68	0	336878..337615	-	245	146276395	-	Rsph17025_0343	-	Triose-phosphate isomerase
338	 63.87	-1	337684..338040	-	118	146276396	-	Rsph17025_0344	-	iron-sulfur cluster assembly accessory protein
339	 63.36	-1	338161..338523	-	120	146276397	-	Rsph17025_0345	-	hypothetical protein
340	 70.09	0	338715..339971	+	418	146276398	-	Rsph17025_0346	-	metallophosphoesterase
341	 73.76	+1	339971..343354	+	1127	146276399	-	Rsph17025_0347	-	hypothetical protein
342	 68.31	0	343399..344496	-	365	146276400	-	Rsph17025_0348	-	translation-associated GTPase
343	 70.45	0	344766..345557	+	263	146276401	trpA	Rsph17025_0349	-	tryptophan synthase subunit alpha
344	 66.84	0	345785..346948	+	387	146276402	-	Rsph17025_0350	-	L-lactate dehydrogenase (cytochrome)
345	 63.56	-1	347086..347697	+	203	146276403	-	Rsph17025_0351	-	50S ribosomal protein L25/general stress protein Ctc
346	 69.76	0	347844..348521	+	225	146276404	-	Rsph17025_0352	-	peptidyl-tRNA hydrolase
347	 70.33	0	348531..349295	-	254	146276405	ppnK	Rsph17025_0353	-	inorganic polyphosphate/ATP-NAD kinase
348	 68.36	0	349462..350757	+	431	146276406	-	Rsph17025_0354	-	serine hydroxymethyltransferase
349	 70.97	0	350797..351168	-	123	146276407	-	Rsph17025_0355	-	hypothetical protein
350	 69.78	0	351262..352032	+	256	146276408	-	Rsph17025_0356	-	alpha/beta hydrolase fold
351	 64.12	-1	352071..352580	-	169	146276409	-	Rsph17025_0357	-	cytochrome B561
352	 61.02	-2	352610..352786	-	58	146276410	-	Rsph17025_0358	-	hypothetical protein
353	 69.82	0	353146..354507	-	453	146276411	-	Rsph17025_0359	-	DEAD/DEAH box helicase domain-containing protein
354	 67.90	0	354767..355498	-	243	146276412	-	Rsph17025_0360	-	hemolysin-type calcium-binding region
355	 67.33	0	355681..359010	-	1109	146276413	carB	Rsph17025_0361	-	carbamoyl phosphate synthase large subunit
356	 70.50	0	359165..360337	+	390	146276414	-	Rsph17025_0362	-	para-aminobenzoate synthase component I
357	 74.04	+1	360280..360957	+	225	146276415	-	Rsph17025_0363	-	hypothetical protein
358	 67.74	0	360997..361650	+	217	146276416	-	Rsph17025_0364	-	abortive infection protein
359	 66.50	0	361831..363606	+	591	146276417	aspS	Rsph17025_0365	-	aspartyl-tRNA synthetase
360	 69.93	0	363610..364314	+	234	146276418	-	Rsph17025_0366	-	GCN5-related N-acetyltransferase
361	 72.56	+1	364325..365020	-	231	146276419	-	Rsph17025_0367	-	response regulator receiver protein
362	 65.43	0	365171..365575	+	134	146276420	-	Rsph17025_0368	-	methylmalonyl-CoA epimerase
363	 68.79	0	365572..365853	+	93	146276421	-	Rsph17025_0369	-	hypothetical protein
364	 67.82	0	365894..366589	-	231	146276422	-	Rsph17025_0370	-	hypothetical protein
365	 72.37	+1	366586..367164	-	192	146276423	-	Rsph17025_0371	-	nitroreductase
366	 64.53	-1	367423..369012	+	529	146276424	-	Rsph17025_0372	-	extracellular solute-binding protein
367	 67.69	0	369013..370083	+	356	146276425	-	Rsph17025_0373	-	binding-protein-dependent transport systems inner membrane component
368	 70.87	0	370080..370982	+	300	146276426	-	Rsph17025_0374	-	binding-protein-dependent transport systems inner membrane component
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.