IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3010	 70.00	0	3106697..3107416	+	239	146279068	-	Rsph17025_3038	-	antenna complex, alpha/beta subunit
3011	 64.36	-1	3107588..3108802	+	404	146279069	-	Rsph17025_3039	-	isocitrate dehydrogenase
3012	 72.00	+1	3108982..3109956	-	324	146279070	-	Rsph17025_3040	-	2-dehydropantoate 2-reductase
3013	 72.40	+1	3109953..3111488	-	511	146279071	-	Rsph17025_3041	-	AMP-dependent synthetase and ligase
3014	 69.43	0	3111654..3112340	-	228	146279072	-	Rsph17025_3042	-	fumarylacetoacetate (FAA) hydrolase
3015	 70.73	0	3112406..3113389	-	327	146279073	-	Rsph17025_3043	-	luciferase family protein
3016	 68.17	0	3113490..3114686	-	398	146279074	-	Rsph17025_3044	-	hypothetical protein
3017	 70.97	0	3114801..3116147	-	448	146279075	-	Rsph17025_3045	-	BLUF domain-containing protein
3018	 65.41	0	3116158..3116475	-	105	146279076	-	Rsph17025_3046	-	hypothetical protein
3019	 75.21	+1	3116613..3117314	+	233	146279077	-	Rsph17025_3047	-	cobalamin (vitamin B12) biosynthesis CbiX protein
3020	 71.68	0	3117311..3119863	-	850	146279078	-	Rsph17025_3048	-	multi-sensor hybrid histidine kinase
3021	 69.68	0	3119958..3121352	-	464	146279079	-	Rsph17025_3049	-	glutamine synthetase, catalytic region
3022	 71.76	0	3121361..3122734	-	457	146279080	-	Rsph17025_3050	-	aminotransferase
3023	 70.73	0	3122731..3123813	-	360	146279081	-	Rsph17025_3051	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3024	 69.96	0	3123806..3124291	-	161	146279082	-	Rsph17025_3052	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
3025	 60.73	-2	3124520..3124738	-	72	146279083	-	Rsph17025_3053	-	hypothetical protein
3026	 66.24	0	3125032..3125499	+	155	146279084	-	Rsph17025_3054	-	heat shock protein Hsp20
3027	 66.22	0	3125496..3125720	+	74	146279085	-	Rsph17025_3055	-	hypothetical protein
3028	 72.09	+1	3125878..3127407	-	509	146279086	-	Rsph17025_3056	-	Mg chelatase, subunit ChlI
3029	 64.86	-1	3127523..3128020	-	165	146279087	-	Rsph17025_3057	-	hypothetical protein
3030	 68.83	0	3128151..3130460	-	769	146279088	-	Rsph17025_3058	-	oxidoreductase alpha (molybdopterin) subunit
3031	 69.58	0	3130670..3132214	+	514	146279089	-	Rsph17025_3059	-	NAD+ synthetase
3032	 71.77	0	3132215..3132763	-	182	146279090	mogA	Rsph17025_3060	-	molybdenum cofactor biosynthesis protein
3033	 72.89	+1	3132915..3134039	+	374	146279091	-	Rsph17025_3061	-	alcohol dehydrogenase
3034	 66.13	0	3134318..3134878	+	186	146279092	-	Rsph17025_3062	-	transposase
3035	 67.80	0	3135080..3135433	+	117	146279093	-	Rsph17025_3063	-	hypothetical protein
3036	 69.51	0	3135487..3135732	-	81	146279094	-	Rsph17025_3064	-	hypothetical protein
3037	 67.50	0	3136150..3137235	+	361	146279095	-	Rsph17025_3065	-	phage integrase family protein
3038	 70.49	0	3137482..3138528	+	348	146279096	-	Rsph17025_3066	-	phosphoribosylaminoimidazole synthetase
3039	 71.07	0	3138525..3139115	+	196	146279097	-	Rsph17025_3067	-	phosphoribosylglycinamide formyltransferase
3040	 66.49	0	3139210..3140367	+	385	146279098	-	Rsph17025_3068	-	ribonuclease D
3041	 73.51	+1	3140404..3140856	-	150	146279099	-	Rsph17025_3069	-	hypothetical protein
3042	 66.67	0	3140986..3141414	+	142	146279100	-	Rsph17025_3070	-	Fe-S metabolism associated SufE
3043	 61.99	-1	3141437..3141778	-	113	146279101	-	Rsph17025_3071	-	hypothetical protein
3044	 69.95	0	3141845..3143641	-	598	146279102	-	Rsph17025_3072	-	peptidase M24
3045	 68.98	0	3143641..3145500	-	619	146279103	-	Rsph17025_3073	-	cobaltochelatase
3046	 75.15	+1	3145542..3145871	-	109	146279104	-	Rsph17025_3074	-	hypothetical protein
3047	 72.42	+1	3145873..3146202	-	109	146279105	-	Rsph17025_3075	-	hypothetical protein
3048	 64.07	-1	3146199..3147236	-	345	146279106	-	Rsph17025_3076	-	cobalt chelatase, pCobS small subunit
3049	 65.25	0	3147360..3147995	-	211	146279107	-	Rsph17025_3077	-	heat shock protein DnaJ domain-containing protein
3050	 68.22	0	3148069..3148326	+	85	146279108	-	Rsph17025_3078	-	BolA family protein
3051	 69.17	0	3148452..3150611	-	719	146279109	-	Rsph17025_3079	-	malate synthase G
3052	 73.39	+1	3150712..3152079	-	455	146279110	-	Rsph17025_3080	-	deoxyribodipyrimidine photo-lyase
3053	 68.74	0	3152304..3154859	+	851	146279111	-	Rsph17025_3081	-	aminopeptidase N
3054	 67.32	0	3154963..3155874	+	303	146279112	-	Rsph17025_3082	-	phospholipid/glycerol acyltransferase
3055	 69.75	0	3155931..3157034	+	367	146279113	-	Rsph17025_3083	-	histidinol-phosphate aminotransferase
3056	 70.63	0	3157047..3157475	-	142	146279114	-	Rsph17025_3084	-	hypothetical protein
3057	 66.07	0	3157613..3159124	-	503	146279115	gatB	Rsph17025_3085	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
3058	 70.85	0	3159292..3159888	+	198	146279116	-	Rsph17025_3086	-	lytic transglycosylase, catalytic
3059	 67.58	0	3160028..3162991	-	987	146279117	valS	Rsph17025_3087	-	valyl-tRNA synthetase
3060	 69.21	0	3163065..3163496	-	143	146279118	-	Rsph17025_3088	-	AsnC family transcriptional regulator
3061	 67.02	0	3163715..3164860	+	381	146279119	-	Rsph17025_3089	-	Orn/DAP/Arg decarboxylase 2
3062	 67.66	0	3165017..3166120	+	367	146279120	-	Rsph17025_3090	-	hypothetical protein
3063	 63.09	-1	3166178..3167464	-	428	146279121	-	Rsph17025_3091	-	citrate synthase I
3064	 67.66	0	3167572..3168987	-	471	146279122	-	Rsph17025_3092	-	glutamyl-tRNA synthetase
3065	 71.88	+1	3169088..3171103	+	671	146279123	-	Rsph17025_3093	-	ComEC/Rec2-related protein
3066	 67.54	0	3171118..3171804	-	228	146279124	-	Rsph17025_3094	-	LexA repressor
3067	 72.49	+1	3171862..3173046	-	394	146279125	-	Rsph17025_3095	-	molybdenum cofactor synthesis domain-containing protein
3068	 70.42	0	3173043..3173522	-	159	146279126	moaC	Rsph17025_3096	-	molybdenum cofactor biosynthesis protein C
3069	 68.39	0	3173522..3174334	-	270	146279127	-	Rsph17025_3097	-	indole-3-glycerol-phosphate synthase
3070	 71.88	+1	3174366..3175382	-	338	146279128	-	Rsph17025_3098	-	anthranilate phosphoribosyltransferase
3071	 68.21	0	3175379..3175960	-	193	146279129	-	Rsph17025_3099	-	anthranilate synthase component II
3072	 75.79	+2	3176138..3177562	+	474	146279130	-	Rsph17025_3100	-	protein of unknown function DUF610, YibQ
3073	 69.51	0	3177638..3179149	-	503	146279131	-	Rsph17025_3101	-	anthranilate synthase component I
3074	 70.63	0	3179159..3181126	-	655	146279132	-	Rsph17025_3102	-	hypothetical protein
3075	 73.92	+1	3181168..3183195	+	675	146279133	-	Rsph17025_3103	-	AsmA family protein
3076	 74.27	+1	3183251..3183868	-	205	146279134	-	Rsph17025_3104	-	GcrA cell cycle regulator
3077	 69.46	0	3184243..3185424	+	393	146279135	-	Rsph17025_3105	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
3078	 68.29	0	3185479..3186465	+	328	146279136	-	Rsph17025_3106	-	ornithine carbamoyltransferase
3079	 67.15	0	3186577..3186783	-	68	146279137	-	Rsph17025_3107	-	hypothetical protein
3080	 66.38	0	3187159..3187857	+	232	146279138	-	Rsph17025_3108	-	3-oxoacid CoA-transferase, A subunit
3081	 66.03	0	3187872..3188501	+	209	146279139	-	Rsph17025_3109	-	3-oxoacid CoA-transferase, B subunit
3082	 65.10	0	3188642..3188833	+	63	146279140	-	Rsph17025_3110	-	hypothetical protein
3083	 74.17	+1	3188959..3191385	-	808	146279141	-	Rsph17025_3111	-	ATP-dependent helicase HrpB
3084	 71.84	+1	3191427..3192122	-	231	146279142	-	Rsph17025_3112	-	hypothetical protein
3085	 72.02	+1	3192276..3193247	+	323	146279143	-	Rsph17025_3113	-	arginine/ornithine transport system ATPase
3086	 66.32	0	3193473..3193763	+	96	146279144	rpmB	Rsph17025_3114	-	50S ribosomal protein L28
3087	 72.27	+1	3193999..3194355	+	118	146279145	-	Rsph17025_3115	-	hypothetical protein
3088	 68.92	0	3194389..3194877	+	162	146279146	-	Rsph17025_3116	-	hypothetical protein
3089	 67.97	0	3194923..3195228	-	101	146279147	-	Rsph17025_3117	-	hypothetical protein
3090	 64.89	0	3195595..3197394	+	599	146279148	-	Rsph17025_3118	-	GTP-binding protein LepA
3091	 64.58	-1	3197434..3197577	-	47	146279149	-	Rsph17025_3119	-	entericidin EcnAB
3092	 71.59	0	3198001..3198630	+	209	146279150	-	Rsph17025_3120	-	hypothetical protein
3093	 67.98	0	3198634..3199545	-	303	146279151	-	Rsph17025_3121	-	ornithine cyclodeaminase
3094	 70.37	0	3199542..3200027	-	161	146279152	-	Rsph17025_3122	-	hypothetical protein
3095	 65.70	0	3200020..3200850	-	276	146279153	-	Rsph17025_3123	-	carboxylesterase
3096	 68.17	0	3200866..3201795	-	309	146279154	-	Rsph17025_3124	-	auxin efflux carrier
3097	 61.98	-1	3202163..3202354	+	63	146279155	-	Rsph17025_3125	-	hypothetical protein
3098	 67.63	0	3202415..3203038	+	207	146279156	-	Rsph17025_3126	-	TetR family transcriptional regulator
3099	 66.54	0	3203123..3203911	-	262	146279157	-	Rsph17025_3127	-	exodeoxyribonuclease III Xth
3100	 60.12	-2	3204145..3204831	-	228	146279158	-	Rsph17025_3128	-	two component transcriptional regulator
3101	 69.79	0	3204982..3206070	+	362	146279159	-	Rsph17025_3129	-	GTP cyclohydrolase II
3102	 72.32	+1	3206067..3206561	+	164	146279160	-	Rsph17025_3130	-	hypothetical protein
3103	 71.49	0	3206566..3207228	-	220	146279161	-	Rsph17025_3131	-	alanine racemase domain-containing protein
3104	 72.45	+1	3207221..3209383	-	720	146279162	-	Rsph17025_3132	-	sulfotransferase
3105	 65.57	0	3209598..3210596	-	332	146279163	-	Rsph17025_3133	-	hypothetical protein
3106	 71.71	0	3210881..3211435	+	184	146279164	-	Rsph17025_3134	-	hypothetical protein
3107	 65.52	0	3211518..3214139	+	873	146279165	leuS	Rsph17025_3135	-	leucyl-tRNA synthetase
3108	 68.10	0	3214126..3214614	+	162	146279166	-	Rsph17025_3136	-	hypothetical protein
3109	 71.30	0	3214611..3215603	+	330	146279167	-	Rsph17025_3137	-	DNA polymerase III, delta
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.