IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2946	 66.59	0	3037264..3038646	-	460	146279004	-	Rsph17025_2972	-	aminotransferase class-III
2947	 66.41	0	3038748..3039512	-	254	146279005	-	Rsph17025_2973	-	binding-protein-dependent transport systems inner membrane component
2948	 68.95	0	3039512..3040300	-	262	146279006	-	Rsph17025_2974	-	ABC transporter related
2949	 67.75	0	3040352..3041362	-	336	146279007	-	Rsph17025_2975	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
2950	 69.49	0	3041513..3042292	-	259	146279008	-	Rsph17025_2976	-	hypothetical protein
2951	 69.66	0	3042423..3042689	-	88	146279009	-	Rsph17025_2977	-	hypothetical protein
2952	 66.36	0	3042784..3044430	-	548	146279010	-	Rsph17025_2978	-	alpha amylase, catalytic region
2953	 71.09	0	3044754..3045590	+	278	146279011	-	Rsph17025_2979	-	diaminopimelate epimerase
2954	 69.95	0	3045587..3046864	+	425	146279012	-	Rsph17025_2980	-	MiaB-like tRNA modifying enzyme
2955	 70.35	0	3046895..3048415	+	506	146279013	-	Rsph17025_2981	-	phosphoglyceromutase
2956	 72.51	+1	3048412..3049524	+	370	146279014	-	Rsph17025_2982	-	peptidase M23B
2957	 67.93	0	3049532..3050881	+	449	146279015	-	Rsph17025_2983	-	carboxyl-terminal protease
2958	 67.08	0	3050889..3051377	+	162	146279016	-	Rsph17025_2984	-	NUDIX hydrolase
2959	 72.24	+1	3051523..3052761	-	412	146279017	-	Rsph17025_2985	-	FolC bifunctional protein
2960	 66.88	0	3052794..3053747	-	317	146279018	-	Rsph17025_2986	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
2961	 72.16	+1	3054018..3054563	+	181	146279019	-	Rsph17025_2987	-	hypothetical protein
2962	 61.00	-2	3054723..3055022	+	99	146279020	-	Rsph17025_2988	-	hypothetical protein
2963	 65.67	0	3055285..3056190	+	301	146279021	-	Rsph17025_2989	-	LysR family transcriptional regulator
2964	 72.77	+1	3056200..3057150	-	316	146279022	-	Rsph17025_2990	-	OmpA/MotB domain-containing protein
2965	 73.98	+1	3057147..3057857	-	236	146279023	-	Rsph17025_2991	-	GCN5-related N-acetyltransferase
2966	 70.08	0	3057854..3058585	-	243	146279024	-	Rsph17025_2992	-	molybdopterin binding domain-containing protein
2967	 65.76	0	3058661..3059542	+	293	146279025	-	Rsph17025_2993	-	methionine aminopeptidase, type I
2968	 75.93	+2	3059607..3060491	-	294	146279026	-	Rsph17025_2994	-	TonB family protein
2969	 67.60	0	3060488..3060916	-	142	146279027	-	Rsph17025_2995	-	biopolymer transport protein ExbD/TolR
2970	 73.97	+1	3060920..3061987	-	355	146279028	-	Rsph17025_2996	-	MotA/TolQ/ExbB proton channel
2971	 67.48	0	3062228..3063085	-	285	146279029	-	Rsph17025_2997	-	short-chain dehydrogenase/reductase SDR
2972	 72.95	+1	3063168..3063788	-	206	146279030	-	Rsph17025_2998	-	enoyl-CoA hydratase/isomerase
2973	 71.58	0	3063785..3064537	-	250	146279031	-	Rsph17025_2999	-	short-chain dehydrogenase/reductase SDR
2974	 69.15	0	3064661..3066190	+	509	146279032	-	Rsph17025_3000	-	hypothetical protein
2975	 72.13	+1	3066260..3067651	+	463	146279033	-	Rsph17025_3001	-	peptidase U62, modulator of DNA gyrase
2976	 73.62	+1	3067638..3068414	+	258	146279034	-	Rsph17025_3002	-	inositol-phosphate phosphatase
2977	 69.28	0	3068420..3069298	-	292	146279035	-	Rsph17025_3003	-	LysR family transcriptional regulator
2978	 70.85	0	3069884..3070528	-	214	146279036	-	Rsph17025_3004	-	HAD family hydrolase
2979	 71.17	0	3070525..3071079	-	184	146279037	-	Rsph17025_3005	-	putative methyltransferase
2980	 71.31	0	3071076..3072281	-	401	146279038	-	Rsph17025_3006	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2981	 67.48	0	3072382..3072870	+	162	146279039	-	Rsph17025_3007	-	redoxin domain-containing protein
2982	 68.20	0	3073034..3074992	-	652	146279040	-	Rsph17025_3008	-	methylmalonyl-CoA mutase, large subunit
2983	 65.74	0	3075341..3076633	+	430	146279041	-	Rsph17025_3009	-	crotonyl-CoA reductase
2984	 70.09	0	3076834..3078525	+	563	146279042	-	Rsph17025_3010	-	AAA ATPase
2985	 59.49	-2	3078604..3078840	+	78	146279043	-	Rsph17025_3011	-	AsnC family transcriptional regulator
2986	 70.51	0	3078885..3079952	-	355	146279044	-	Rsph17025_3012	-	dihydroorotate dehydrogenase 2
2987	 69.91	0	3079949..3080287	-	112	146279045	-	Rsph17025_3013	-	hypothetical protein
2988	 71.95	+1	3082269..3083177	+	302	146279046	-	Rsph17025_3016	-	response regulator receiver protein
2989	 70.51	0	3083246..3086629	+	1127	146279047	-	Rsph17025_3017	-	transglutaminase domain-containing protein
2990	 72.45	+1	3086629..3089013	+	794	146279048	-	Rsph17025_3018	-	hypothetical protein
2991	 71.32	0	3089014..3089895	+	293	146279049	-	Rsph17025_3019	-	transglutaminase domain-containing protein
2992	 73.06	+1	3090021..3091115	-	364	146279050	-	Rsph17025_3020	-	secreted hydrolase-like protein
2993	 73.53	+1	3091105..3093492	-	795	146279051	-	Rsph17025_3021	-	hypothetical protein
2994	 71.16	0	3093489..3094178	-	229	146279052	-	Rsph17025_3022	-	ABC transporter related
2995	 74.79	+1	3094297..3095355	-	352	146279053	-	Rsph17025_3023	-	hypothetical protein
2996	 74.37	+1	3095357..3096355	-	332	146279054	-	Rsph17025_3024	-	periplasmic lipoprotein-like protein
2997	 71.11	0	3096355..3097863	-	502	146279055	-	Rsph17025_3025	-	hypothetical protein
2998	 62.35	-1	3097959..3098444	-	161	146279056	-	Rsph17025_3026	-	bacterioferritin
2999	 62.75	-1	3098434..3098688	-	84	146279057	-	Rsph17025_3027	-	hypothetical protein
3000	 68.87	0	3098767..3100035	-	422	146279058	-	Rsph17025_3028	-	hypothetical protein
3001	 65.43	0	3100089..3100250	-	53	146279059	-	Rsph17025_3029	-	hypothetical protein
3002	 71.51	0	3100604..3101284	+	226	146279060	-	Rsph17025_3030	-	hypothetical protein
3003	 70.76	0	3101298..3102128	-	276	146279061	-	Rsph17025_3031	-	regulatory protein, IclR
3004	 69.03	0	3102411..3102791	+	126	146279062	-	Rsph17025_3032	-	glyoxalase/bleomycin resistance protein/dioxygenase
3005	 69.70	0	3102910..3103404	-	164	146279063	-	Rsph17025_3033	-	ureidoglycolate hydrolase
3006	 70.25	0	3103503..3104339	-	278	146279064	-	Rsph17025_3034	-	hypothetical protein
3007	 69.99	0	3104336..3105751	-	471	146279065	-	Rsph17025_3035	-	chitin deacetylase
3008	 68.36	0	3105930..3106283	+	117	146279066	-	Rsph17025_3036	-	transthyretin
3009	 66.03	0	3106528..3106683	+	51	146279067	-	Rsph17025_3037	-	antenna complex, alpha/beta subunit
3010	 70.00	0	3106697..3107416	+	239	146279068	-	Rsph17025_3038	-	antenna complex, alpha/beta subunit
3011	 64.36	-1	3107588..3108802	+	404	146279069	-	Rsph17025_3039	-	isocitrate dehydrogenase
3012	 72.00	+1	3108982..3109956	-	324	146279070	-	Rsph17025_3040	-	2-dehydropantoate 2-reductase
3013	 72.40	+1	3109953..3111488	-	511	146279071	-	Rsph17025_3041	-	AMP-dependent synthetase and ligase
3014	 69.43	0	3111654..3112340	-	228	146279072	-	Rsph17025_3042	-	fumarylacetoacetate (FAA) hydrolase
3015	 70.73	0	3112406..3113389	-	327	146279073	-	Rsph17025_3043	-	luciferase family protein
3016	 68.17	0	3113490..3114686	-	398	146279074	-	Rsph17025_3044	-	hypothetical protein
3017	 70.97	0	3114801..3116147	-	448	146279075	-	Rsph17025_3045	-	BLUF domain-containing protein
3018	 65.41	0	3116158..3116475	-	105	146279076	-	Rsph17025_3046	-	hypothetical protein
3019	 75.21	+1	3116613..3117314	+	233	146279077	-	Rsph17025_3047	-	cobalamin (vitamin B12) biosynthesis CbiX protein
3020	 71.68	0	3117311..3119863	-	850	146279078	-	Rsph17025_3048	-	multi-sensor hybrid histidine kinase
3021	 69.68	0	3119958..3121352	-	464	146279079	-	Rsph17025_3049	-	glutamine synthetase, catalytic region
3022	 71.76	0	3121361..3122734	-	457	146279080	-	Rsph17025_3050	-	aminotransferase
3023	 70.73	0	3122731..3123813	-	360	146279081	-	Rsph17025_3051	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3024	 69.96	0	3123806..3124291	-	161	146279082	-	Rsph17025_3052	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
3025	 60.73	-2	3124520..3124738	-	72	146279083	-	Rsph17025_3053	-	hypothetical protein
3026	 66.24	0	3125032..3125499	+	155	146279084	-	Rsph17025_3054	-	heat shock protein Hsp20
3027	 66.22	0	3125496..3125720	+	74	146279085	-	Rsph17025_3055	-	hypothetical protein
3028	 72.09	+1	3125878..3127407	-	509	146279086	-	Rsph17025_3056	-	Mg chelatase, subunit ChlI
3029	 64.86	-1	3127523..3128020	-	165	146279087	-	Rsph17025_3057	-	hypothetical protein
3030	 68.83	0	3128151..3130460	-	769	146279088	-	Rsph17025_3058	-	oxidoreductase alpha (molybdopterin) subunit
3031	 69.58	0	3130670..3132214	+	514	146279089	-	Rsph17025_3059	-	NAD+ synthetase
3032	 71.77	0	3132215..3132763	-	182	146279090	mogA	Rsph17025_3060	-	molybdenum cofactor biosynthesis protein
3033	 72.89	+1	3132915..3134039	+	374	146279091	-	Rsph17025_3061	-	alcohol dehydrogenase
3034	 66.13	0	3134318..3134878	+	186	146279092	-	Rsph17025_3062	-	transposase
3035	 67.80	0	3135080..3135433	+	117	146279093	-	Rsph17025_3063	-	hypothetical protein
3036	 69.51	0	3135487..3135732	-	81	146279094	-	Rsph17025_3064	-	hypothetical protein
3037	 67.50	0	3136150..3137235	+	361	146279095	-	Rsph17025_3065	-	phage integrase family protein
3038	 70.49	0	3137482..3138528	+	348	146279096	-	Rsph17025_3066	-	phosphoribosylaminoimidazole synthetase
3039	 71.07	0	3138525..3139115	+	196	146279097	-	Rsph17025_3067	-	phosphoribosylglycinamide formyltransferase
3040	 66.49	0	3139210..3140367	+	385	146279098	-	Rsph17025_3068	-	ribonuclease D
3041	 73.51	+1	3140404..3140856	-	150	146279099	-	Rsph17025_3069	-	hypothetical protein
3042	 66.67	0	3140986..3141414	+	142	146279100	-	Rsph17025_3070	-	Fe-S metabolism associated SufE
3043	 61.99	-1	3141437..3141778	-	113	146279101	-	Rsph17025_3071	-	hypothetical protein
3044	 69.95	0	3141845..3143641	-	598	146279102	-	Rsph17025_3072	-	peptidase M24
3045	 68.98	0	3143641..3145500	-	619	146279103	-	Rsph17025_3073	-	cobaltochelatase
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.