IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2853	 66.76	0	2932265..2934445	-	726	146278911	-	Rsph17025_2879	-	excinuclease ABC subunit B
2854	 66.67	0	2934699..2935010	+	103	146278912	-	Rsph17025_2880	-	ETC complex I subunit region
2855	 71.27	0	2935042..2935497	-	151	146278913	-	Rsph17025_2881	-	hypothetical protein
2856	 67.72	0	2935497..2935874	-	125	146278914	-	Rsph17025_2882	-	hypothetical protein
2857	 65.76	0	2936080..2937177	+	365	146278915	-	Rsph17025_2883	-	carboxynorspermidine decarboxylase
2858	 65.21	0	2937214..2938452	+	412	146278916	-	Rsph17025_2884	-	saccharopine dehydrogenase
2859	 59.86	-2	2938616..2940982	-	788	146278917	-	Rsph17025_2885	-	hypothetical protein
2860	 71.11	0	2941263..2941442	-	59	146278918	-	Rsph17025_2886	-	hypothetical protein
2861	 69.51	0	2941469..2943088	-	539	146278919	-	Rsph17025_2887	-	ABC transporter related
2862	 67.19	0	2943090..2944229	-	379	146278920	-	Rsph17025_2888	-	binding-protein-dependent transport systems inner membrane component
2863	 67.42	0	2944222..2945145	-	307	146278921	-	Rsph17025_2889	-	alkaline phosphatase
2864	 65.72	0	2945202..2946791	-	529	146278922	-	Rsph17025_2890	-	extracellular solute-binding protein
2865	 71.97	+1	2946948..2947871	-	307	146278923	-	Rsph17025_2891	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2866	 67.23	0	2948068..2948421	+	117	146278924	-	Rsph17025_2892	-	hypothetical protein
2867	 72.90	+1	2948486..2950780	-	764	146278925	-	Rsph17025_2893	-	DEAD/DEAH box helicase domain-containing protein
2868	 68.74	0	2951150..2952064	+	304	146278926	-	Rsph17025_2894	-	thioredoxin
2869	 66.07	0	2952068..2952736	+	222	146278927	-	Rsph17025_2895	-	peptidase S16, lon domain-containing protein
2870	 68.33	0	2952733..2952912	+	59	146278928	-	Rsph17025_2896	-	hypothetical protein
2871	 72.29	+1	2952988..2954214	-	408	146278929	-	Rsph17025_2897	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
2872	 73.32	+1	2954225..2955622	+	465	146278930	-	Rsph17025_2898	-	amidase
2873	 68.70	0	2955745..2956923	+	392	146278931	-	Rsph17025_2899	-	aminotransferase, class I and II
2874	 69.96	0	2956934..2960209	+	1091	146278932	-	Rsph17025_2900	-	cell division FtsK/SpoIIIE
2875	 66.82	0	2960263..2960901	+	212	146278933	-	Rsph17025_2901	-	outer membrane lipoprotein carrier protein LolA
2876	 65.98	0	2960920..2961501	-	193	146278934	-	Rsph17025_2902	-	hypothetical protein
2877	 60.38	-2	2961736..2962101	+	121	146278935	-	Rsph17025_2903	-	hemimethylated DNA binding protein
2878	 71.29	0	2962129..2963706	-	525	146278936	-	Rsph17025_2904	-	gamma-glutamyltransferase
2879	 71.78	0	2963915..2964364	-	149	146278937	-	Rsph17025_2905	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
2880	 64.20	-1	2964354..2964677	-	107	146278938	-	Rsph17025_2906	-	anti-sigma-factor antagonist
2881	 70.42	0	2964812..2965264	+	150	146278939	-	Rsph17025_2907	-	putative GAF sensor protein
2882	 62.84	-1	2965325..2965585	-	86	146278940	-	Rsph17025_2908	-	hypothetical protein
2883	 68.52	0	2965670..2966317	+	215	146278941	-	Rsph17025_2909	-	pseudouridine synthase
2884	 69.20	0	2966362..2967822	-	486	146278942	-	Rsph17025_2910	-	aldehyde dehydrogenase
2885	 67.77	0	2968255..2969703	-	482	146278943	-	Rsph17025_2911	-	HemY domain-containing protein
2886	 74.57	+1	2969714..2971003	-	429	146278944	-	Rsph17025_2912	-	hypothetical protein
2887	 76.21	+2	2971071..2971814	-	247	146278945	-	Rsph17025_2913	-	uroporphyrinogen III synthase HEM4
2888	 72.89	+1	2971860..2972951	+	363	146278946	-	Rsph17025_2914	-	metalloendopeptidase glycoprotease family
2889	 72.98	+1	2972948..2973865	+	305	146278947	-	Rsph17025_2915	-	NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
2890	 69.96	0	2973869..2974141	+	90	146278948	-	Rsph17025_2916	-	YciI-like protein
2891	 67.63	0	2974141..2974554	+	137	146278949	-	Rsph17025_2917	-	hypothetical protein
2892	 65.45	0	2974637..2976859	-	740	146278950	-	Rsph17025_2918	-	polynucleotide phosphorylase/polyadenylase
2893	 61.85	-1	2976963..2977232	-	89	146278951	rpsO	Rsph17025_2919	-	30S ribosomal protein S15
2894	 68.82	0	2977406..2977915	-	169	146278952	-	Rsph17025_2920	-	hypothetical protein
2895	 68.43	0	2978124..2979200	-	358	146278953	-	Rsph17025_2921	-	cysteine synthase A
2896	 70.53	0	2979384..2980289	-	301	146278954	truB	Rsph17025_2922	-	tRNA pseudouridine synthase B
2897	 70.19	0	2980357..2981094	-	245	146278955	-	Rsph17025_2923	-	periplasmic protein-like protein
2898	 68.27	0	2981084..2981581	-	165	146278956	rbfA	Rsph17025_2924	-	ribosome-binding factor A
2899	 72.10	+1	2981686..2982495	+	269	146278957	-	Rsph17025_2925	-	dihydrodipicolinate reductase
2900	 74.94	+1	2982806..2984074	+	422	146278958	-	Rsph17025_2926	-	Fmu (Sun) domain-containing protein
2901	 75.62	+2	2984100..2985797	+	565	146278959	-	Rsph17025_2927	-	heparinase II/III family protein
2902	 69.87	0	2985824..2987413	+	529	146278960	purH	Rsph17025_2928	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2903	 68.63	0	2987415..2987975	+	186	146278961	-	Rsph17025_2929	-	lipoprotein signal peptidase
2904	 74.43	+1	2988029..2988556	+	175	146278962	-	Rsph17025_2930	-	hypothetical protein
2905	 69.78	0	2988635..2989981	+	448	146278963	-	Rsph17025_2931	-	peptidase M16 domain-containing protein
2906	 70.26	0	2989978..2991285	+	435	146278964	-	Rsph17025_2932	-	peptidase M16 domain-containing protein
2907	 72.76	+1	2991342..2993180	+	612	146278965	mutL	Rsph17025_2933	-	DNA mismatch repair protein
2908	 68.78	0	2993191..2994327	+	378	146278966	-	Rsph17025_2934	-	hypothetical protein
2909	 71.78	0	2994389..2995033	-	214	146278967	-	Rsph17025_2935	-	anti-ECFsigma factor, ChrR
2910	 66.07	0	2995042..2995548	-	168	146278968	-	Rsph17025_2936	-	RNA polymerase sigma factor RpoE
2911	 67.21	0	2995806..2997098	+	430	146278969	-	Rsph17025_2937	-	FAD dependent oxidoreductase
2912	 69.60	0	2997107..2997856	+	249	146278970	-	Rsph17025_2938	-	hypothetical protein
2913	 71.48	0	2997853..2999058	+	401	146278971	-	Rsph17025_2939	-	Na+/melibiose symporter and related transporters-like protein
2914	 67.02	0	2999062..2999622	+	186	146278972	-	Rsph17025_2940	-	hypothetical protein
2915	 67.34	0	2999619..3000356	+	245	146278973	-	Rsph17025_2941	-	short-chain dehydrogenase/reductase SDR
2916	 72.06	+1	3000462..3001517	-	351	146278974	-	Rsph17025_2942	-	saccharopine dehydrogenase (NAD(+), L-lysine-forming)
2917	 67.53	0	3002609..3003307	+	232	146278975	-	Rsph17025_2943	-	two component transcriptional regulator
2918	 66.67	0	3003346..3004758	-	470	146278976	-	Rsph17025_2944	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
2919	 69.86	0	3004755..3005537	-	260	146278977	-	Rsph17025_2945	-	HAD family hydrolase
2920	 66.47	0	3006412..3007419	+	335	146278978	-	Rsph17025_2946	-	glycosyl transferase family protein
2921	 63.82	-1	3007462..3008235	-	257	146278979	-	Rsph17025_2947	-	glucose-1-phosphate cytidylyltransferase
2922	 66.05	0	3008617..3009918	-	433	146278980	hslU	Rsph17025_2948	-	ATP-dependent protease ATP-binding subunit
2923	 69.18	0	3009915..3010472	-	185	146278981	-	Rsph17025_2949	-	ATP-dependent protease peptidase subunit
2924	 66.36	0	3010718..3011038	-	106	146278982	-	Rsph17025_2950	-	thioredoxin
2925	 72.95	+1	3011097..3014456	-	1119	146278983	-	Rsph17025_2951	-	UvrD-like DNA helicase, C terminal
2926	 74.03	+1	3014446..3017448	-	1000	146278984	-	Rsph17025_2952	-	exonuclease-like protein
2927	 71.32	0	3017441..3018106	-	221	146278985	-	Rsph17025_2953	-	nucleotidyl transferase
2928	 73.57	+1	3018088..3019116	-	342	146278986	-	Rsph17025_2954	-	aminoglycoside phosphotransferase
2929	 72.22	+1	3019109..3019594	-	161	146278987	-	Rsph17025_2955	-	hypothetical protein
2930	 71.79	0	3019646..3021208	-	520	146278988	-	Rsph17025_2956	-	PAS domain-containing protein
2931	 67.89	0	3021315..3022703	-	462	146278989	-	Rsph17025_2957	-	integral membrane sensor signal transduction histidine kinase
2932	 62.79	-1	3022796..3023491	+	231	146278990	-	Rsph17025_2958	-	electron transport protein SCO1/SenC
2933	 67.75	0	3023484..3024038	+	184	146278991	-	Rsph17025_2959	-	two component Fis family transcriptional regulator
2934	 63.30	-1	3024246..3025256	+	336	146278992	-	Rsph17025_2960	-	transposase, IS4 family protein
2935	 62.22	-1	3025468..3025782	+	104	146278993	-	Rsph17025_2961	-	histone family protein nucleoid-structuring protein H-NS
2936	 65.15	0	3025785..3026378	-	197	146278994	-	Rsph17025_2962	-	metal dependent phosphohydrolase
2937	 61.67	-1	3026375..3027334	-	319	146278995	-	Rsph17025_2963	-	glycosyl transferase family protein
2938	 64.30	-1	3027453..3028844	+	463	146278996	-	Rsph17025_2964	-	S-adenosyl-L-homocysteine hydrolase
2939	 66.33	0	3028897..3030102	-	401	146278997	-	Rsph17025_2965	-	tryptophan synthase subunit beta
2940	 67.81	0	3030398..3030922	-	174	146278998	-	Rsph17025_2966	-	hypothetical protein
2941	 61.83	-1	3031133..3031318	+	61	146278999	-	Rsph17025_2967	-	hypothetical protein
2942	 69.47	0	3031386..3032420	-	344	146279000	-	Rsph17025_2968	-	topoisomerase IB-like protein
2943	 70.52	0	3032536..3034221	+	561	146279001	-	Rsph17025_2969	-	protein of unknown function DUF894, DitE
2944	 68.29	0	3034308..3036092	-	594	146279002	-	Rsph17025_2970	-	transposase, IS4 family protein
2945	 64.52	-1	3036243..3037127	-	294	146279003	purU	Rsph17025_2971	-	formyltetrahydrofolate deformylase
2946	 66.59	0	3037264..3038646	-	460	146279004	-	Rsph17025_2972	-	aminotransferase class-III
2947	 66.41	0	3038748..3039512	-	254	146279005	-	Rsph17025_2973	-	binding-protein-dependent transport systems inner membrane component
2948	 68.95	0	3039512..3040300	-	262	146279006	-	Rsph17025_2974	-	ABC transporter related
2949	 67.75	0	3040352..3041362	-	336	146279007	-	Rsph17025_2975	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
2950	 69.49	0	3041513..3042292	-	259	146279008	-	Rsph17025_2976	-	hypothetical protein
2951	 69.66	0	3042423..3042689	-	88	146279009	-	Rsph17025_2977	-	hypothetical protein
2952	 66.36	0	3042784..3044430	-	548	146279010	-	Rsph17025_2978	-	alpha amylase, catalytic region
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.