IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
230	 67.40	0	223155..226004	-	949	146276288	-	Rsph17025_0232	-	putative monovalent cation/H+ antiporter subunit A
231	 72.12	+1	226132..227397	-	421	146276289	-	Rsph17025_0233	-	ROK family protein
232	 68.98	0	227543..228580	+	345	146276290	-	Rsph17025_0234	-	periplasmic binding protein/LacI transcriptional regulator
233	 66.76	0	228676..229767	+	363	146276291	-	Rsph17025_0235	-	monosaccharide-transporting ATPase
234	 67.44	0	229767..230543	+	258	146276292	-	Rsph17025_0236	-	ABC transporter related
235	 73.37	+1	230540..231136	+	198	146276293	frcK	Rsph17025_0237	-	putative fructose transport system kinase
236	 68.51	0	231133..232107	-	324	146276294	-	Rsph17025_0238	-	hypothetical protein
237	 70.20	0	232224..233921	+	565	146276295	-	Rsph17025_0239	-	adenine deaminase
238	 71.76	0	233949..234203	-	84	146276296	-	Rsph17025_0240	-	hypothetical protein
239	 64.86	-1	234353..235678	-	441	146276297	-	Rsph17025_0241	-	TRAP dicarboxylate transporter, DctM subunit
240	 65.58	0	235680..236321	-	213	146276298	-	Rsph17025_0242	-	tripartite ATP-independent periplasmic transporter DctQ
241	 65.67	0	236406..237410	-	334	146276299	-	Rsph17025_0243	-	TRAP dicarboxylate transporter, DctP subunit
242	 72.76	+1	237549..239534	+	661	146276300	-	Rsph17025_0244	-	multi-sensor signal transduction histidine kinase
243	 70.94	0	239531..240139	+	202	146276301	-	Rsph17025_0245	-	response regulator receiver protein
244	 68.55	0	240114..240962	-	282	146276302	-	Rsph17025_0246	-	ABC-3 protein
245	 66.67	0	240959..241819	-	286	146276303	-	Rsph17025_0247	-	ABC-3 protein
246	 69.70	0	241806..242696	-	296	146276304	-	Rsph17025_0248	-	ABC transporter related
247	 66.22	0	242693..243592	-	299	146276305	-	Rsph17025_0249	-	periplasmic solute binding protein
248	 70.15	0	243776..244234	+	152	146276306	-	Rsph17025_0250	-	endoribonuclease L-PSP
249	 73.28	+1	244234..245004	+	256	146276307	-	Rsph17025_0251	-	glycerophosphoryl diester phosphodiesterase
250	 69.88	0	245156..246337	+	393	146276308	-	Rsph17025_0252	-	hypothetical protein
251	 67.96	0	246349..246966	+	205	146276309	-	Rsph17025_0253	-	glutathione S-transferase domain-containing protein
252	 66.67	0	246959..247231	+	90	146276310	-	Rsph17025_0254	-	transcriptional coactivator/pterin dehydratase
253	 65.46	0	247467..249200	-	577	146276311	-	Rsph17025_0255	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
254	 68.25	0	249362..250369	-	335	146276312	-	Rsph17025_0256	-	thioredoxin reductase
255	 67.07	0	250522..251022	+	166	146276313	-	Rsph17025_0257	-	AsnC family transcriptional regulator
256	 71.05	0	251051..251803	-	250	146276314	-	Rsph17025_0258	-	hypothetical protein
257	 71.19	0	251800..252861	-	353	146276315	-	Rsph17025_0259	-	hypothetical protein
258	 68.60	0	252858..253736	-	292	146276316	-	Rsph17025_0260	-	prolipoprotein diacylglyceryl transferase
259	 65.86	0	253841..254089	+	82	146276317	-	Rsph17025_0261	-	hypothetical protein
260	 71.54	0	254464..254730	+	88	146276318	-	Rsph17025_0262	-	hypothetical protein
261	 60.93	-2	254727..255092	+	121	146276319	-	Rsph17025_0263	-	response regulator receiver protein
262	 67.48	0	255089..257053	+	654	146276320	-	Rsph17025_0264	-	CheA signal transduction histidine kinase
263	 66.06	0	257050..257541	+	163	146276321	-	Rsph17025_0265	-	putative CheW protein
264	 66.29	0	257647..258180	+	177	146276322	-	Rsph17025_0266	-	putative CheW protein
265	 64.04	-1	258180..259016	+	278	146276323	-	Rsph17025_0267	-	protein-glutamate O-methyltransferase
266	 68.19	0	259019..260134	+	371	146276324	-	Rsph17025_0268	-	response regulator receiver modulated CheB methylesterase
267	 68.84	0	260131..261921	+	596	146276325	-	Rsph17025_0269	-	hypothetical protein
268	 64.47	-1	261969..262970	+	333	146276326	-	Rsph17025_0270	-	glutathione S-transferase-like protein
269	 70.10	0	262940..264394	-	484	146276327	-	Rsph17025_0271	-	two component, sigma54 specific, Fis family transcriptional regulator
270	 69.89	0	264391..265011	-	206	146276328	-	Rsph17025_0272	-	hypothetical protein
271	 66.09	0	265086..266978	-	630	146276329	-	Rsph17025_0273	-	AMP-dependent synthetase and ligase
272	 68.42	0	267140..269419	-	759	146276330	-	Rsph17025_0274	-	malic enzyme
273	 71.50	0	269585..269977	+	130	146276331	-	Rsph17025_0275	-	cytidine deaminase
274	 71.94	+1	269979..271286	+	435	146276332	deoA	Rsph17025_0276	-	thymidine phosphorylase
275	 72.77	+1	271286..272482	+	398	146276333	-	Rsph17025_0277	-	phosphopentomutase
276	 68.60	0	272479..273462	+	327	146276334	-	Rsph17025_0278	-	adenosine deaminase
277	 63.51	-1	273455..274087	+	210	146276335	-	Rsph17025_0279	-	uracil phosphoribosyltransferase
278	 75.78	+2	274153..275085	+	310	146276336	-	Rsph17025_0280	-	sporulation domain-containing protein
279	 70.49	0	275207..276226	-	339	146276337	-	Rsph17025_0281	-	hypothetical protein
280	 67.15	0	276310..277956	-	548	146276338	-	Rsph17025_0282	-	AMP-dependent synthetase and ligase
281	 70.63	0	278056..278988	+	310	146276339	-	Rsph17025_0283	-	hypothetical protein
282	 71.90	+1	279006..279635	-	209	146276340	-	Rsph17025_0284	-	methyltransferase type 11
283	 70.43	0	279745..280647	-	300	146276341	-	Rsph17025_0285	-	GntR family transcriptional regulator
284	 67.98	0	280769..281761	+	330	146276342	-	Rsph17025_0286	-	alcohol dehydrogenase
285	 69.93	0	281852..283354	+	500	146276343	-	Rsph17025_0287	-	Altronate dehydratase
286	 72.74	+1	283430..285223	+	597	146276344	-	Rsph17025_0288	-	integral membrane sensor signal transduction histidine kinase
287	 73.33	+1	285220..286539	+	439	146276345	-	Rsph17025_0289	-	two component, sigma54 specific, Fis family transcriptional regulator
288	 66.67	0	286749..287702	+	317	146276346	-	Rsph17025_0290	-	TRAP transporter solute receptor TAXI family protein
289	 68.47	0	287812..289920	+	702	146276347	-	Rsph17025_0291	-	TRAP transporter, 4TM/12TM fusion protein
290	 73.71	+1	289917..290285	+	122	146276348	-	Rsph17025_0292	-	hypothetical protein
291	 69.79	0	290305..291585	-	426	146276349	-	Rsph17025_0293	-	guanine deaminase
292	 68.26	0	291715..293094	+	459	146276350	-	Rsph17025_0294	-	magnesium transporter
293	 72.87	+1	293091..293654	+	187	146276351	-	Rsph17025_0295	-	5-formyltetrahydrofolate cyclo-ligase
294	 65.37	0	293651..294961	-	436	146276352	-	Rsph17025_0296	-	ATPase with chaperone activity-like protein
295	 66.67	0	294983..295474	-	163	146276353	-	Rsph17025_0297	-	hypothetical protein
296	 66.78	0	295489..296334	-	281	146276354	-	Rsph17025_0298	-	hypothetical protein
297	 68.08	0	296373..296939	-	188	146276355	-	Rsph17025_0299	-	TPR repeat-containing protein
298	 66.26	0	296946..297917	-	323	146276356	-	Rsph17025_0300	-	type II secretion system protein
299	 64.29	-1	297922..298890	-	322	146276357	-	Rsph17025_0301	-	type II secretion system protein
300	 67.15	0	298898..300352	-	484	146276358	-	Rsph17025_0302	-	type II secretion system protein E
301	 66.75	0	300373..301644	-	423	146276359	-	Rsph17025_0303	-	ATPase involved in chromosome partitioning-like protein
302	 65.41	0	301864..302502	-	212	146276360	-	Rsph17025_0304	-	OmpA/MotB domain-containing protein
303	 66.38	0	302506..303891	-	461	146276361	-	Rsph17025_0305	-	type II and III secretion system protein
304	 71.43	0	304084..304965	-	293	146276362	-	Rsph17025_0306	-	lytic transglycosylase, catalytic
305	 56.37	-2	305315..305518	+	67	146276363	-	Rsph17025_0307	-	hypothetical protein
306	 57.35	-2	305685..305888	+	67	146276364	-	Rsph17025_0308	-	hypothetical protein
307	 64.48	-1	305961..306785	+	274	146276365	-	Rsph17025_0309	-	Flp pilus assembly protein CpaB-like protein
308	 68.04	0	307200..307490	+	96	146276366	-	Rsph17025_0310	-	hypothetical protein
309	 60.89	-2	307708..307932	+	74	146276367	-	Rsph17025_0311	-	hypothetical protein
310	 66.78	0	308315..309178	+	287	146276368	-	Rsph17025_0313	-	hypothetical protein
311	 67.04	0	309303..310115	-	270	146276369	-	Rsph17025_0314	-	transposase
312	 67.85	0	311797..312303	+	168	146276370	-	Rsph17025_0316	-	hypothetical protein
313	 62.04	-1	312309..312632	+	107	146276371	-	Rsph17025_0317	-	hypothetical protein
314	 64.58	-1	313952..314335	+	127	146276372	-	Rsph17025_0320	-	hypothetical protein
315	 69.94	0	314742..315749	+	335	146276373	-	Rsph17025_0321	-	tRNA-dihydrouridine synthase A
316	 70.09	0	315835..316653	+	272	146276374	-	Rsph17025_0322	-	hypothetical protein
317	 67.00	0	316811..318301	-	496	146276375	-	Rsph17025_0323	-	replicative DNA helicase
318	 68.38	0	318570..319268	-	232	146276376	pyrE	Rsph17025_0324	-	orotate phosphoribosyltransferase
319	 71.47	0	319311..320351	-	346	146276377	-	Rsph17025_0325	-	dihydroorotase
320	 74.05	+1	320448..320975	+	175	146276378	-	Rsph17025_0326	-	metal dependent phosphohydrolase
321	 70.05	0	321139..322053	+	304	146276379	-	Rsph17025_0327	-	ATPase
322	 72.35	+1	322158..323354	+	398	146276380	-	Rsph17025_0328	-	VWA containing CoxE family protein
323	 71.10	0	323496..323924	+	142	146276381	-	Rsph17025_0329	-	hypothetical protein
324	 72.64	+1	324174..326366	+	730	146276382	-	Rsph17025_0330	-	OmpA/MotB domain-containing protein
325	 73.25	+1	326455..327426	+	323	146276383	-	Rsph17025_0331	-	hypothetical protein
326	 74.48	+1	327426..328436	+	336	146276384	-	Rsph17025_0332	-	molybdopterin binding domain-containing protein
327	 63.59	-1	328481..329065	-	194	146276385	infC	Rsph17025_0333	-	translation initiation factor IF-3
328	 75.16	+1	329188..329823	+	211	146276386	-	Rsph17025_0334	-	hypothetical protein
329	 65.30	0	329915..330721	-	268	146276387	-	Rsph17025_0335	-	oxidoreductase FAD-binding subunit
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.