IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2553	 64.69	-1	2617910..2618263	-	117	146278611	-	Rsph17025_2577	-	DNA-directed RNA polymerase subunit omega
2554	 65.92	0	2618347..2618883	-	178	146278612	-	Rsph17025_2578	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2555	 62.83	-1	2619074..2619646	+	190	146278613	-	Rsph17025_2579	-	hypothetical protein
2556	 68.12	0	2619775..2620734	+	319	146278614	-	Rsph17025_2580	-	hydroxymethylbutenyl pyrophosphate reductase
2557	 67.33	0	2620752..2621204	+	150	146278615	-	Rsph17025_2581	-	hypothetical protein
2558	 67.92	0	2621211..2622248	-	345	146278616	-	Rsph17025_2582	-	alanine racemase
2559	 68.55	0	2622959..2623330	+	123	146278617	-	Rsph17025_2583	-	hypothetical protein
2560	 75.81	+2	2623327..2624310	+	327	146278618	-	Rsph17025_2584	-	peptidase S49
2561	 58.50	-2	2624372..2624824	-	150	146278619	-	Rsph17025_2585	-	GCN5-related N-acetyltransferase
2562	 68.40	0	2625468..2625698	+	76	146278620	-	Rsph17025_2586	-	hypothetical protein
2563	 72.03	+1	2626307..2626567	+	86	146278621	-	Rsph17025_2587	-	hypothetical protein
2564	 69.92	0	2626569..2628473	+	634	146278622	-	Rsph17025_2588	-	Ig family protein
2565	 64.24	-1	2628657..2628944	+	95	146278623	-	Rsph17025_2589	-	hypothetical protein
2566	 69.02	0	2628935..2631358	+	807	146278624	-	Rsph17025_2590	-	hypothetical protein
2567	 65.77	0	2631387..2632163	-	258	146278625	-	Rsph17025_2591	-	enoyl-CoA hydratase/isomerase
2568	 70.42	0	2632224..2633075	-	283	146278626	-	Rsph17025_2592	-	formamidopyrimidine-DNA glycosylase
2569	 63.61	-1	2633169..2633921	+	250	146278627	-	Rsph17025_2593	-	ubiquinone/menaquinone biosynthesis methyltransferase
2570	 68.04	0	2633923..2635452	+	509	146278628	-	Rsph17025_2594	-	2-polyprenylphenol 6-hydroxylase
2571	 68.49	0	2635447..2636103	-	218	146278629	flgD	Rsph17025_2595	-	flagellar basal body rod modification protein
2572	 71.29	0	2636112..2637128	-	338	146278630	-	Rsph17025_2596	-	hypothetical protein
2573	 65.59	0	2638484..2638762	+	92	146278631	-	Rsph17025_2597	-	hypothetical protein
2574	 71.68	0	2638752..2639090	+	112	146278632	-	Rsph17025_2598	-	hypothetical protein
2575	 69.26	0	2639101..2640411	-	436	146278633	-	Rsph17025_2599	-	FliI/YscN family ATPase
2576	 67.45	0	2640495..2640878	+	127	146278634	flgB	Rsph17025_2600	-	flagellar basal body rod protein FlgB
2577	 63.78	-1	2640881..2641261	+	126	146278635	flgC	Rsph17025_2601	-	flagellar basal body rod protein FlgC
2578	 69.76	0	2641275..2641565	+	96	146278636	fliE	Rsph17025_2602	-	flagellar hook-basal body protein FliE
2579	 65.17	0	2641565..2641831	+	88	146278637	-	Rsph17025_2603	-	export protein FliQ
2580	 67.50	0	2641833..2642552	+	239	146278638	flgF	Rsph17025_2604	-	flagellar basal body rod protein FlgF
2581	 66.92	0	2642549..2643334	+	261	146278639	flgG	Rsph17025_2605	-	flagellar basal body rod protein FlgG
2582	 70.71	0	2643334..2643753	+	139	146278640	flgA	Rsph17025_2606	-	flagellar basal body P-ring biosynthesis protein FlgA
2583	 66.94	0	2643764..2644483	+	239	146278641	flgH	Rsph17025_2607	-	flagellar basal body L-ring protein
2584	 60.30	-2	2644641..2645237	-	198	146278642	-	Rsph17025_2608	-	hypothetical protein
2585	 64.40	-1	2645587..2646555	-	322	146278643	-	Rsph17025_2610	-	transposase, IS4 family protein
2586	 66.11	0	2647135..2648214	-	359	146278644	flhB	Rsph17025_2611	-	flagellar biosynthesis protein FlhB
2587	 68.47	0	2648211..2648987	-	258	146278645	-	Rsph17025_2612	-	type III secretion system inner membrane R protein
2588	 67.34	0	2648984..2651053	-	689	146278646	flhA	Rsph17025_2613	-	flagellar biosynthesis protein FlhA
2589	 69.71	0	2651058..2651747	-	229	146278647	-	Rsph17025_2614	-	lytic transglycosylase, catalytic
2590	 65.75	0	2651898..2653199	-	433	146278648	-	Rsph17025_2615	-	xylose isomerase
2591	 73.00	+1	2653196..2654632	-	478	146278649	-	Rsph17025_2616	-	xylulokinase
2592	 65.77	0	2654633..2655415	-	260	146278650	-	Rsph17025_2617	-	ABC transporter related
2593	 67.74	0	2655412..2656710	-	432	146278651	-	Rsph17025_2618	-	inner-membrane translocator
2594	 67.93	0	2656789..2657814	-	341	146278652	-	Rsph17025_2619	-	D-xylose ABC transporter, periplasmic substrate-binding protein
2595	 71.36	0	2658009..2659286	+	425	146278653	-	Rsph17025_2620	-	ROK family protein
2596	 69.00	0	2659415..2661298	+	627	146278654	-	Rsph17025_2621	-	surface antigen (D15)
2597	 70.63	0	2661298..2665128	+	1276	146278655	-	Rsph17025_2622	-	hypothetical protein
2598	 67.98	0	2665132..2665968	-	278	146278656	-	Rsph17025_2623	-	putative ribonuclease BN
2599	 66.24	0	2666043..2666276	-	77	146278657	-	Rsph17025_2624	-	hypothetical protein
2600	 62.42	-1	2666361..2667020	-	219	146278658	-	Rsph17025_2625	-	hypothetical protein
2601	 65.97	0	2667017..2669179	-	720	146278659	-	Rsph17025_2626	-	protein of unknown function DUF940, membrane lipoprotein putative
2602	 65.39	0	2669273..2671159	-	628	146278660	-	Rsph17025_2627	-	polysaccharide biosynthesis protein CapD
2603	 63.72	-1	2671306..2671950	-	214	146278661	-	Rsph17025_2628	-	sugar transferase
2604	 75.18	+1	2671947..2672780	-	277	146278662	-	Rsph17025_2629	-	NAD-dependent epimerase/dehydratase
2605	 69.37	0	2672781..2673224	-	147	146278663	-	Rsph17025_2630	-	MarR family transcriptional regulator
2606	 70.28	0	2673224..2674054	-	276	146278664	-	Rsph17025_2631	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2607	 69.77	0	2674061..2674318	-	85	146278665	-	Rsph17025_2632	-	glutaredoxin 3
2608	 70.82	0	2674354..2675076	-	240	146278666	-	Rsph17025_2633	-	amidophosphoribosyltransferase-like protein
2609	 71.79	0	2675108..2675926	+	272	146278667	-	Rsph17025_2634	-	hypothetical protein
2610	 64.73	-1	2675964..2677097	+	377	146278668	hemH	Rsph17025_2635	-	ferrochelatase
2611	 66.67	0	2677163..2677357	+	64	146278669	-	Rsph17025_2636	-	hypothetical protein
2612	 67.28	0	2677499..2678149	-	216	146278670	-	Rsph17025_2637	-	ErfK/YbiS/YcfS/YnhG family protein
2613	 68.89	0	2678280..2678819	+	179	146278671	-	Rsph17025_2638	-	Allergen V5/Tpx-1 family protein
2614	 61.41	-1	2678867..2679361	-	164	146278672	-	Rsph17025_2639	-	ErfK/YbiS/YcfS/YnhG family protein
2615	 74.24	+1	2679475..2680689	-	404	146278673	-	Rsph17025_2640	-	SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase-like protein
2616	 69.27	0	2680686..2682530	-	614	146278674	-	Rsph17025_2641	-	ABC transporter related
2617	 68.78	0	2682527..2684371	-	614	146278675	-	Rsph17025_2642	-	ABC transporter related
2618	 74.72	+1	2684436..2685578	-	380	146278676	-	Rsph17025_2643	-	polynucleotide adenylyltransferase region
2619	 71.60	0	2685575..2686162	-	195	146278677	-	Rsph17025_2644	-	NUDIX hydrolase
2620	 67.58	0	2686155..2687144	-	329	146278678	-	Rsph17025_2645	-	Hsp33 protein
2621	 69.63	0	2687217..2687654	+	145	146278679	-	Rsph17025_2646	-	NUDIX hydrolase
2622	 68.02	0	2687676..2688932	-	418	146278680	-	Rsph17025_2647	-	response regulator receiver protein
2623	 65.81	0	2689119..2689469	+	116	146278681	-	Rsph17025_2648	-	Hpt protein
2624	 68.27	0	2689432..2690679	-	415	146278682	-	Rsph17025_2649	-	threonine dehydratase
2625	 64.87	0	2690798..2692024	+	408	146278683	-	Rsph17025_2650	-	argininosuccinate synthase
2626	 71.32	0	2692097..2692762	+	221	146278684	-	Rsph17025_2651	-	hypothetical protein
2627	 67.50	0	2692752..2693474	-	240	146278685	-	Rsph17025_2652	-	hypothetical protein
2628	 65.11	0	2693471..2694370	-	299	146278686	-	Rsph17025_2653	-	aminotransferase, class IV
2629	 66.71	0	2694478..2696733	-	751	146278687	-	Rsph17025_2654	-	malic enzyme
2630	 70.77	0	2696862..2699492	+	876	146278688	-	Rsph17025_2655	-	DNA mismatch repair protein
2631	 69.34	0	2699586..2700146	-	186	146278689	-	Rsph17025_2656	-	GrpE protein
2632	 66.67	0	2700152..2701204	-	350	146278690	hrcA	Rsph17025_2657	-	heat-inducible transcription repressor
2633	 69.19	0	2701355..2702068	+	237	146278691	-	Rsph17025_2658	-	ribonuclease PH
2634	 67.32	0	2702065..2702676	+	203	146278692	-	Rsph17025_2659	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2635	 66.13	0	2702673..2703047	+	124	146278693	-	Rsph17025_2660	-	endoribonuclease L-PSP
2636	 67.44	0	2703050..2704207	+	385	146278694	-	Rsph17025_2661	-	coproporphyrinogen III oxidase
2637	 66.67	0	2704209..2704562	+	117	146278695	-	Rsph17025_2662	-	hypothetical protein
2638	 65.23	0	2704537..2705439	-	300	146278696	-	Rsph17025_2663	-	parB-like partition protein
2639	 62.29	-1	2705442..2706263	-	273	146278697	-	Rsph17025_2664	-	cobyrinic acid a,c-diamide synthase
2640	 61.72	-1	2706256..2706882	-	208	146278698	-	Rsph17025_2665	-	methyltransferase GidB
2641	 62.45	-1	2706879..2708753	-	624	146278699	-	Rsph17025_2666	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2642	 65.81	0	2708756..2710042	-	428	146278700	trmE	Rsph17025_2667	-	tRNA modification GTPase TrmE
2643	 63.44	-1	2710069..2711337	-	422	146278701	rho	Rsph17025_2668	-	transcription termination factor Rho
2644	 63.05	-1	2711477..2711974	-	165	146278702	-	Rsph17025_2669	-	hypothetical protein
2645	 68.86	0	2712357..2712950	+	197	146278703	-	Rsph17025_2670	-	Maf family protein
2646	 70.24	0	2712947..2713786	+	279	146278704	-	Rsph17025_2671	-	shikimate 5-dehydrogenase
2647	 73.57	+1	2713783..2714376	+	197	146278705	-	Rsph17025_2672	-	dephospho-CoA kinase
2648	 69.19	0	2714345..2715058	+	237	146278706	-	Rsph17025_2673	-	DNA polymerase III, epsilon subunit
2649	 64.27	-1	2715062..2715562	-	166	146278707	-	Rsph17025_2674	-	preprotein translocase subunit SecB
2650	 72.08	+1	2715624..2716103	-	159	146278708	-	Rsph17025_2675	-	FxsA cytoplasmic membrane protein
2651	 66.36	0	2716247..2716906	+	219	146278709	-	Rsph17025_2676	-	import inner membrane translocase, subunit Tim44
2652	 69.88	0	2716906..2717931	+	341	146278710	-	Rsph17025_2677	-	MltA domain-containing protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.