IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2471	 71.53	0	2543823..2544665	-	280	146278529	-	Rsph17025_2495	-	pantoate--beta-alanine ligase
2472	 68.94	0	2544662..2545495	-	277	146278530	panB	Rsph17025_2496	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2473	 68.91	0	2545620..2546423	-	267	146278531	-	Rsph17025_2497	-	ErfK/YbiS/YcfS/YnhG family protein
2474	 65.92	0	2546549..2547754	-	401	146278532	-	Rsph17025_2498	-	peptidase M24
2475	 62.60	-1	2547993..2548361	-	122	146278533	-	Rsph17025_2499	-	ferredoxin
2476	 62.23	-1	2548595..2549383	-	262	146278534	-	Rsph17025_2500	-	ABC transporter related
2477	 66.33	0	2549393..2550571	-	392	146278535	-	Rsph17025_2501	-	polar amino acid ABC transporter, inner membrane subunit
2478	 65.08	0	2550724..2551986	-	420	146278536	-	Rsph17025_2502	-	polar amino acid ABC transporter, inner membrane subunit
2479	 66.76	0	2552130..2553146	-	338	146278537	-	Rsph17025_2503	-	cationic amino acid ABC transporter, periplasmic binding protein
2480	 71.89	+1	2553376..2554083	-	235	146278538	-	Rsph17025_2504	-	ATP12 ATPase
2481	 68.49	0	2554083..2555123	-	346	146278539	-	Rsph17025_2505	-	RluA family pseudouridine synthase
2482	 68.72	0	2555337..2556650	-	437	146278540	-	Rsph17025_2506	-	recombination factor protein RarA
2483	 69.70	0	2556689..2558074	-	461	146278541	-	Rsph17025_2507	-	protease Do
2484	 62.25	-1	2558128..2558739	-	203	146278542	-	Rsph17025_2508	-	response regulator receiver protein
2485	 67.38	0	2559006..2559425	-	139	146278543	rplQ	Rsph17025_2509	-	50S ribosomal protein L17
2486	 63.82	-1	2559523..2560539	-	338	146278544	-	Rsph17025_2510	-	DNA-directed RNA polymerase subunit alpha
2487	 65.13	0	2560655..2561044	-	129	146278545	-	Rsph17025_2511	-	30S ribosomal protein S11
2488	 65.04	0	2561059..2561427	-	122	146278546	rpsM	Rsph17025_2512	-	30S ribosomal protein S13
2489	 65.75	0	2561604..2562257	-	217	146278547	-	Rsph17025_2513	-	adenylate kinase
2490	 63.28	-1	2562268..2563626	-	452	146278548	secY	Rsph17025_2514	-	preprotein translocase subunit SecY
2491	 68.12	0	2563727..2564209	-	160	146278549	rplO	Rsph17025_2515	-	50S ribosomal protein L15
2492	 65.61	0	2564366..2564554	-	62	146278550	rpmD	Rsph17025_2516	-	50S ribosomal protein L30
2493	 67.20	0	2564567..2565130	-	187	146278551	rpsE	Rsph17025_2517	-	30S ribosomal protein S5
2494	 65.56	0	2565142..2565501	-	119	146278552	rplR	Rsph17025_2518	-	50S ribosomal protein L18
2495	 65.54	0	2565513..2566046	-	177	146278553	rplF	Rsph17025_2519	-	50S ribosomal protein L6
2496	 64.66	-1	2566057..2566455	-	132	146278554	rpsH	Rsph17025_2520	-	30S ribosomal protein S8
2497	 60.78	-2	2566468..2566773	-	101	146278555	rpsN	Rsph17025_2521	-	30S ribosomal protein S14
2498	 61.68	-1	2566793..2567353	-	186	146278556	rplE	Rsph17025_2522	-	50S ribosomal protein L5
2499	 64.38	-1	2567353..2567658	-	101	146278557	rplX	Rsph17025_2523	-	50S ribosomal protein L24
2500	 63.14	-1	2567658..2568026	-	122	146278558	rplN	Rsph17025_2524	-	50S ribosomal protein L14
2501	 61.73	-1	2568100..2568342	-	80	146278559	rpsQ	Rsph17025_2525	-	30S ribosomal protein S17
2502	 66.67	0	2568356..2568559	-	67	146278560	-	Rsph17025_2526	-	50S ribosomal protein L29
2503	 65.46	0	2568798..2569211	-	137	146278561	rplP	Rsph17025_2527	-	50S ribosomal protein L16
2504	 66.11	0	2569224..2569940	-	238	146278562	rpsC	Rsph17025_2528	-	30S ribosomal protein S3
2505	 62.20	-1	2569940..2570320	-	126	146278563	rplV	Rsph17025_2529	-	50S ribosomal protein L22
2506	 57.71	-2	2570324..2570602	-	92	146278564	rpsS	Rsph17025_2530	-	30S ribosomal protein S19
2507	 67.02	0	2570606..2571445	-	279	146278565	rplB	Rsph17025_2531	-	50S ribosomal protein L2
2508	 60.61	-2	2571568..2571864	-	98	146278566	rplW	Rsph17025_2532	-	50S ribosomal protein L23
2509	 64.57	-1	2571861..2572481	-	206	146278567	rplD	Rsph17025_2533	-	50S ribosomal protein L4
2510	 66.39	0	2572471..2573190	-	239	146278568	rplC	Rsph17025_2534	-	50S ribosomal protein L3
2511	 62.14	-1	2573204..2573512	-	102	146278569	rpsJ	Rsph17025_2535	-	30S ribosomal protein S10
2512	 64.46	-1	2573585..2574760	-	391	146278570	-	Rsph17025_2536	-	elongation factor Tu
2513	 64.21	-1	2574835..2576952	-	705	146278571	-	Rsph17025_2537	-	elongation factor G
2514	 63.91	-1	2576978..2577448	-	156	146278572	-	Rsph17025_2538	-	30S ribosomal protein S7
2515	 62.10	-1	2577461..2577832	-	123	146278573	rpsL	Rsph17025_2539	-	30S ribosomal protein S12
2516	 68.50	0	2578045..2578971	-	308	146278574	-	Rsph17025_2540	-	hypothetical protein
2517	 64.81	-1	2579147..2583394	-	1415	146278575	-	Rsph17025_2541	-	DNA-directed RNA polymerase subunit beta'
2518	 65.26	0	2583476..2587609	-	1377	146278576	rpoB	Rsph17025_2542	-	DNA-directed RNA polymerase subunit beta
2519	 61.60	-1	2587855..2588229	-	124	146278577	rplL	Rsph17025_2543	-	50S ribosomal protein L7/L12
2520	 63.76	-1	2588299..2588814	-	171	146278578	rplJ	Rsph17025_2544	-	50S ribosomal protein L10
2521	 66.95	0	2589051..2589749	-	232	146278579	rplA	Rsph17025_2545	-	50S ribosomal protein L1
2522	 65.12	0	2589753..2590205	-	150	146278580	rplK	Rsph17025_2546	-	50S ribosomal protein L11
2523	 63.50	-1	2590298..2590834	-	178	146278581	-	Rsph17025_2547	-	NusG antitermination factor
2524	 62.56	-1	2590996..2591190	-	64	146278582	secE	Rsph17025_2548	-	preprotein translocase subunit SecE
2525	 64.46	-1	2591531..2592706	-	391	146278583	-	Rsph17025_2549	-	elongation factor Tu
2526	 66.15	0	2592808..2593383	-	191	146278584	-	Rsph17025_2550	-	hypothetical protein
2527	 68.27	0	2593532..2595835	-	767	146278585	-	Rsph17025_2551	-	DNA topoisomerase IV subunit A
2528	 73.93	+1	2595968..2596504	+	178	146278586	-	Rsph17025_2552	-	SH3 type 3 domain-containing protein
2529	 69.98	0	2596593..2597408	+	271	146278587	-	Rsph17025_2553	-	short-chain dehydrogenase/reductase SDR
2530	 62.86	-1	2597535..2597744	+	69	146278588	-	Rsph17025_2554	-	hypothetical protein
2531	 69.08	0	2597745..2598323	+	192	146278589	-	Rsph17025_2555	-	ATP--cobalamin adenosyltransferase
2532	 65.49	0	2598454..2599215	+	253	146278590	-	Rsph17025_2556	-	electron transfer flavoprotein beta-subunit
2533	 69.36	0	2599215..2600141	+	308	146278591	-	Rsph17025_2557	-	electron transfer flavoprotein, alpha subunit
2534	 67.03	0	2600190..2601014	-	274	146278592	-	Rsph17025_2558	-	hypothetical protein
2535	 63.81	-1	2601183..2602058	+	291	146278593	-	Rsph17025_2559	-	3-hydroxybutyryl-CoA dehydrogenase
2536	 65.19	0	2602071..2602340	-	89	146278594	-	Rsph17025_2560	-	phosphotransferase system, phosphocarrier protein HPr
2537	 67.42	0	2602337..2602735	-	132	146278595	-	Rsph17025_2561	-	PTS system fructose subfamily IIA component
2538	 67.55	0	2602732..2603640	-	302	146278596	-	Rsph17025_2562	-	hypothetical protein
2539	 67.60	0	2603662..2604090	-	142	146278597	-	Rsph17025_2563	-	HPr kinase
2540	 67.57	0	2604087..2605739	-	550	146278598	-	Rsph17025_2564	-	integral membrane sensor signal transduction histidine kinase
2541	 62.70	-1	2605927..2606556	+	209	146278599	-	Rsph17025_2565	-	hypothetical protein
2542	 65.23	0	2606871..2608469	+	532	146278600	-	Rsph17025_2566	-	phosphoenolpyruvate carboxykinase
2543	 67.57	0	2608635..2610302	+	555	146278601	-	Rsph17025_2567	-	acyl-CoA dehydrogenase domain-containing protein
2544	 72.97	+1	2610335..2611048	-	237	146278602	recO	Rsph17025_2568	-	DNA repair protein RecO
2545	 71.73	0	2611073..2611408	-	111	146278603	-	Rsph17025_2569	-	hypothetical protein
2546	 68.74	0	2611405..2612319	-	304	146278604	era	Rsph17025_2570	-	GTP-binding protein Era
2547	 72.32	+1	2612312..2613001	-	229	146278605	-	Rsph17025_2571	-	ribonuclease III
2548	 63.88	-1	2612998..2613786	-	262	146278606	-	Rsph17025_2572	-	signal peptidase I
2549	 69.32	0	2613856..2614269	-	137	146278607	acpS	Rsph17025_2573	-	4'-phosphopantetheinyl transferase
2550	 71.20	0	2614292..2615041	-	249	146278608	-	Rsph17025_2574	-	pyridoxal phosphate biosynthetic protein PdxJ
2551	 65.60	0	2615087..2615743	-	218	146278609	-	Rsph17025_2575	-	hypothetical protein
2552	 65.44	0	2615762..2617879	-	705	146278610	-	Rsph17025_2576	-	(p)ppGpp synthetase I, SpoT/RelA
2553	 64.69	-1	2617910..2618263	-	117	146278611	-	Rsph17025_2577	-	DNA-directed RNA polymerase subunit omega
2554	 65.92	0	2618347..2618883	-	178	146278612	-	Rsph17025_2578	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2555	 62.83	-1	2619074..2619646	+	190	146278613	-	Rsph17025_2579	-	hypothetical protein
2556	 68.12	0	2619775..2620734	+	319	146278614	-	Rsph17025_2580	-	hydroxymethylbutenyl pyrophosphate reductase
2557	 67.33	0	2620752..2621204	+	150	146278615	-	Rsph17025_2581	-	hypothetical protein
2558	 67.92	0	2621211..2622248	-	345	146278616	-	Rsph17025_2582	-	alanine racemase
2559	 68.55	0	2622959..2623330	+	123	146278617	-	Rsph17025_2583	-	hypothetical protein
2560	 75.81	+2	2623327..2624310	+	327	146278618	-	Rsph17025_2584	-	peptidase S49
2561	 58.50	-2	2624372..2624824	-	150	146278619	-	Rsph17025_2585	-	GCN5-related N-acetyltransferase
2562	 68.40	0	2625468..2625698	+	76	146278620	-	Rsph17025_2586	-	hypothetical protein
2563	 72.03	+1	2626307..2626567	+	86	146278621	-	Rsph17025_2587	-	hypothetical protein
2564	 69.92	0	2626569..2628473	+	634	146278622	-	Rsph17025_2588	-	Ig family protein
2565	 64.24	-1	2628657..2628944	+	95	146278623	-	Rsph17025_2589	-	hypothetical protein
2566	 69.02	0	2628935..2631358	+	807	146278624	-	Rsph17025_2590	-	hypothetical protein
2567	 65.77	0	2631387..2632163	-	258	146278625	-	Rsph17025_2591	-	enoyl-CoA hydratase/isomerase
2568	 70.42	0	2632224..2633075	-	283	146278626	-	Rsph17025_2592	-	formamidopyrimidine-DNA glycosylase
2569	 63.61	-1	2633169..2633921	+	250	146278627	-	Rsph17025_2593	-	ubiquinone/menaquinone biosynthesis methyltransferase
2570	 68.04	0	2633923..2635452	+	509	146278628	-	Rsph17025_2594	-	2-polyprenylphenol 6-hydroxylase
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.