IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2380	 64.37	-1	2451897..2452463	+	188	146278438	-	Rsph17025_2404	-	elongation factor P
2381	 70.58	0	2452534..2453913	-	459	146278439	-	Rsph17025_2405	-	fructuronate reductase
2382	 69.97	0	2453903..2454628	-	241	146278440	-	Rsph17025_2406	-	2-deoxy-D-gluconate 3-dehydrogenase
2383	 67.03	0	2454625..2455449	-	274	146278441	-	Rsph17025_2407	-	5-keto-4-deoxyuronate isomerase
2384	 67.66	0	2455461..2455763	-	100	146278442	-	Rsph17025_2408	-	cupin 2 domain-containing protein
2385	 66.74	0	2455772..2457052	-	426	146278443	-	Rsph17025_2409	-	TRAP dicarboxylate transporter, DctM subunit
2386	 67.40	0	2457055..2457600	-	181	146278444	-	Rsph17025_2410	-	tripartite ATP-independent periplasmic transporter DctQ
2387	 63.39	-1	2457659..2458636	-	325	146278445	-	Rsph17025_2411	-	TRAP dicarboxylate transporter, DctP subunit
2388	 68.87	0	2458662..2460068	-	468	146278446	-	Rsph17025_2412	-	glucuronate isomerase
2389	 66.95	0	2460172..2460888	+	238	146278447	-	Rsph17025_2413	-	GntR family transcriptional regulator
2390	 72.72	+1	2460870..2461778	+	302	146278448	-	Rsph17025_2414	-	ribokinase-like domain-containing protein
2391	 71.09	0	2461791..2463215	-	474	146278449	-	Rsph17025_2415	-	hypothetical protein
2392	 72.72	+1	2463215..2465164	-	649	146278450	-	Rsph17025_2416	-	hypothetical protein
2393	 73.17	+1	2465489..2466703	+	404	146278451	-	Rsph17025_2417	-	peptidase S1 and S6, chymotrypsin/Hap
2394	 73.99	+1	2466703..2467794	+	363	146278452	-	Rsph17025_2418	-	hypothetical protein
2395	 70.91	0	2467798..2469093	+	431	146278453	-	Rsph17025_2419	-	hypothetical protein
2396	 72.02	+1	2469090..2471498	+	802	146278454	-	Rsph17025_2420	-	DNA/RNA non-specific endonuclease
2397	 72.18	+1	2471609..2472007	+	132	146278455	-	Rsph17025_2421	-	rhodanese domain-containing protein
2398	 70.05	0	2472034..2472624	+	196	146278456	-	Rsph17025_2422	-	two component LuxR family transcriptional regulator
2399	 72.43	+1	2472851..2474863	+	670	146278457	-	Rsph17025_2423	-	PAS/PAC sensor hybrid histidine kinase
2400	 68.59	0	2474860..2476263	-	467	146278458	-	Rsph17025_2424	-	glycoside hydrolase family protein
2401	 69.03	0	2476436..2477449	-	337	146278459	-	Rsph17025_2425	-	NAD-dependent epimerase/dehydratase
2402	 71.96	+1	2477515..2478591	-	358	146278460	-	Rsph17025_2426	-	hypothetical protein
2403	 71.34	0	2478588..2479679	-	363	146278461	-	Rsph17025_2427	-	hypothetical protein
2404	 72.43	+1	2479679..2480788	-	369	146278462	-	Rsph17025_2428	-	hypothetical protein
2405	 72.57	+1	2480790..2481890	-	366	146278463	-	Rsph17025_2429	-	glycosyl transferase, group 1
2406	 71.00	0	2481887..2483896	-	669	146278464	-	Rsph17025_2430	-	NAD-dependent epimerase/dehydratase
2407	 70.64	0	2483893..2484999	-	368	146278465	-	Rsph17025_2431	-	NAD-dependent epimerase/dehydratase
2408	 70.29	0	2485094..2486224	+	376	146278466	-	Rsph17025_2432	-	alcohol dehydrogenase
2409	 73.88	+1	2486215..2487240	+	341	146278467	-	Rsph17025_2433	-	oxidoreductase domain-containing protein
2410	 67.55	0	2487247..2488041	+	264	146278468	-	Rsph17025_2434	-	Ku domain-containing protein
2411	 71.46	0	2488328..2489329	-	333	146278469	-	Rsph17025_2435	-	alcohol dehydrogenase
2412	 71.57	0	2489382..2490074	-	230	146278470	-	Rsph17025_2436	-	rpsU-divergently transcribed protein
2413	 62.80	-1	2490271..2490477	+	68	146278471	rpsU	Rsph17025_2437	-	30S ribosomal protein S21
2414	 67.81	0	2490713..2491411	+	232	146278472	-	Rsph17025_2438	-	phosphatidylserine decarboxylase
2415	 66.40	0	2491415..2492155	+	246	146278473	-	Rsph17025_2439	-	CDP-alcohol phosphatidyltransferase
2416	 67.64	0	2492180..2492794	+	204	146278474	-	Rsph17025_2440	-	phosphatidylethanolamine N-methyltransferase
2417	 66.67	0	2492849..2493307	-	152	146278475	-	Rsph17025_2441	-	AsnC family transcriptional regulator
2418	 70.87	0	2493448..2494566	+	372	146278476	-	Rsph17025_2442	-	alanine dehydrogenase
2419	 64.40	-1	2494591..2495031	-	146	146278477	-	Rsph17025_2443	-	large conductance mechanosensitive channel protein
2420	 71.01	0	2495133..2495684	-	183	146278478	-	Rsph17025_2444	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2421	 70.13	0	2495706..2497121	+	471	146278479	-	Rsph17025_2445	-	argininosuccinate lyase
2422	 72.60	+1	2497273..2497491	+	72	146278480	-	Rsph17025_2446	-	hypothetical protein
2423	 65.41	0	2497493..2497810	+	105	146278481	-	Rsph17025_2447	-	hypothetical protein
2424	 68.17	0	2497847..2499112	+	421	146278482	-	Rsph17025_2448	-	diaminopimelate decarboxylase
2425	 72.44	+1	2499141..2501633	+	830	146278483	-	Rsph17025_2449	-	hypothetical protein
2426	 75.75	+2	2501702..2502472	-	256	146278484	-	Rsph17025_2450	-	Zinc finger-domain-containing protein
2427	 68.60	0	2502635..2503306	+	223	146278485	-	Rsph17025_2451	-	ABC transporter related
2428	 73.75	+1	2503303..2504205	+	300	146278486	-	Rsph17025_2452	-	hypothetical protein
2429	 67.08	0	2504205..2504930	+	241	146278487	-	Rsph17025_2453	-	phospholipid/glycerol acyltransferase
2430	 71.24	0	2504945..2505535	-	196	146278488	-	Rsph17025_2454	-	GCN5-related N-acetyltransferase
2431	 71.89	+1	2505532..2506890	-	452	146278489	-	Rsph17025_2455	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2432	 72.83	+1	2506887..2507486	-	199	146278490	-	Rsph17025_2456	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2433	 67.51	0	2507545..2508252	+	235	146278491	-	Rsph17025_2457	-	AzlC family protein
2434	 71.47	0	2508249..2508581	+	110	146278492	-	Rsph17025_2458	-	branched-chain amino acid transport
2435	 67.32	0	2508591..2509202	-	203	146278493	-	Rsph17025_2459	-	hypothetical protein
2436	 63.44	-1	2509236..2509421	-	61	146278494	-	Rsph17025_2460	-	aa3 type cytochrome c oxidase subunit IV
2437	 71.21	0	2509482..2510516	-	344	146278495	-	Rsph17025_2461	-	beta-lactamase domain-containing protein
2438	 71.64	0	2510513..2512201	-	562	146278496	-	Rsph17025_2462	-	acyl-CoA dehydrogenase domain-containing protein
2439	 76.14	+2	2512310..2513248	+	312	146278497	-	Rsph17025_2463	-	Sua5/YciO/YrdC/YwlC family protein
2440	 66.15	0	2513255..2513833	-	192	146278498	-	Rsph17025_2464	-	DNA-3-methyladenine glycosylase I
2441	 66.43	0	2513924..2514751	+	275	146278499	-	Rsph17025_2465	-	diguanylate phosphodiesterase
2442	 68.54	0	2514893..2516068	+	391	146278500	-	Rsph17025_2466	-	acetyl-CoA acetyltransferase
2443	 64.74	-1	2516167..2516892	+	241	146278501	-	Rsph17025_2467	-	acetoacetyl-CoA reductase
2444	 57.67	-2	2517031..2517219	-	62	146278502	-	Rsph17025_2468	-	hypothetical protein
2445	 71.81	+1	2517300..2518115	-	271	146278503	-	Rsph17025_2469	-	methyltransferase small
2446	 68.76	0	2518331..2519332	+	333	146278504	-	Rsph17025_2470	-	polyprenyl synthetase
2447	 73.95	+1	2519383..2520219	-	278	146278505	-	Rsph17025_2471	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
2448	 69.66	0	2520212..2521912	-	566	146278506	-	Rsph17025_2472	-	TPR repeat-containing protein
2449	 65.46	0	2522012..2523667	-	551	146278507	-	Rsph17025_2473	-	electron-transferring-flavoprotein dehydrogenase
2450	 64.33	-1	2523956..2524426	+	156	146278508	-	Rsph17025_2474	-	transcription elongation factor GreA
2451	 70.66	0	2524437..2525387	+	316	146278509	-	Rsph17025_2475	-	hypothetical protein
2452	 69.62	0	2525392..2526576	-	394	146278510	-	Rsph17025_2476	-	glucose sorbosone dehydrogenase
2453	 71.38	0	2526680..2527252	-	190	146278511	-	Rsph17025_2477	-	hypothetical protein
2454	 69.84	0	2527355..2527669	-	104	146278512	-	Rsph17025_2478	-	small multidrug resistance protein
2455	 67.81	0	2527666..2528625	-	319	146278513	-	Rsph17025_2479	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2456	 69.46	0	2528846..2529310	+	154	146278514	-	Rsph17025_2480	-	transcription activator, effector binding
2457	 63.68	-1	2529401..2530540	-	379	146278515	-	Rsph17025_2481	-	citrate (pro-3S)-lyase
2458	 69.66	0	2530626..2531627	+	333	146278516	-	Rsph17025_2482	-	hypothetical protein
2459	 70.30	0	2531739..2532701	+	320	146278517	-	Rsph17025_2483	-	mandelate racemase/muconate lactonizing protein
2460	 66.55	0	2532704..2533564	+	286	146278518	-	Rsph17025_2484	-	aminotransferase, class IV
2461	 71.27	0	2533613..2534350	-	245	146278519	-	Rsph17025_2485	-	N-formylglutamate amidohydrolase
2462	 69.92	0	2534491..2535936	+	481	146278520	-	Rsph17025_2486	-	pyruvate kinase
2463	 60.70	-2	2536050..2536250	+	66	146278521	rpmI	Rsph17025_2487	-	50S ribosomal protein L35
2464	 68.32	0	2536263..2536625	+	120	146278522	rplT	Rsph17025_2488	-	50S ribosomal protein L20
2465	 68.55	0	2536681..2537847	+	388	146278523	-	Rsph17025_2489	-	phenylalanyl-tRNA synthetase, alpha subunit
2466	 65.44	0	2537881..2538612	+	243	146278524	-	Rsph17025_2490	-	hypothetical protein
2467	 70.72	0	2538945..2541362	+	805	146278525	pheT	Rsph17025_2491	-	phenylalanyl-tRNA synthetase subunit beta
2468	 63.29	-1	2541457..2542107	-	216	146278526	-	Rsph17025_2492	-	hypothetical protein
2469	 57.41	-2	2542115..2542384	-	89	146278527	-	Rsph17025_2493	-	hypothetical protein
2470	 70.68	0	2542506..2543777	+	423	146278528	-	Rsph17025_2494	-	succinyl-diaminopimelate desuccinylase
2471	 71.53	0	2543823..2544665	-	280	146278529	-	Rsph17025_2495	-	pantoate--beta-alanine ligase
2472	 68.94	0	2544662..2545495	-	277	146278530	panB	Rsph17025_2496	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2473	 68.91	0	2545620..2546423	-	267	146278531	-	Rsph17025_2497	-	ErfK/YbiS/YcfS/YnhG family protein
2474	 65.92	0	2546549..2547754	-	401	146278532	-	Rsph17025_2498	-	peptidase M24
2475	 62.60	-1	2547993..2548361	-	122	146278533	-	Rsph17025_2499	-	ferredoxin
2476	 62.23	-1	2548595..2549383	-	262	146278534	-	Rsph17025_2500	-	ABC transporter related
2477	 66.33	0	2549393..2550571	-	392	146278535	-	Rsph17025_2501	-	polar amino acid ABC transporter, inner membrane subunit
2478	 65.08	0	2550724..2551986	-	420	146278536	-	Rsph17025_2502	-	polar amino acid ABC transporter, inner membrane subunit
2479	 66.76	0	2552130..2553146	-	338	146278537	-	Rsph17025_2503	-	cationic amino acid ABC transporter, periplasmic binding protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.