IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2345	 65.04	0	2413130..2413744	+	204	146278403	-	Rsph17025_2368	-	hypothetical protein
2346	 67.44	0	2413843..2415663	+	606	146278404	-	Rsph17025_2369	-	GTP-binding protein TypA
2347	 69.94	0	2415698..2416492	-	264	146278405	-	Rsph17025_2370	-	glutamine amidotransferase-like protein
2348	 68.73	0	2416645..2416935	-	96	146278406	-	Rsph17025_2371	-	hypothetical protein
2349	 66.97	0	2416937..2419588	-	883	146278407	alaS	Rsph17025_2372	-	alanyl-tRNA synthetase
2350	 61.92	-1	2419676..2420749	-	357	146278408	recA	Rsph17025_2373	-	recombinase A
2351	 63.62	-1	2420947..2421537	+	196	146278409	-	Rsph17025_2374	-	hypothetical protein
2352	 66.54	0	2421541..2423841	-	766	146278410	-	Rsph17025_2375	-	integral membrane sensor hybrid histidine kinase
2353	 73.92	+1	2423945..2425144	-	399	146278411	-	Rsph17025_2376	-	Fmu (Sun) domain-containing protein
2354	 67.85	0	2425198..2425959	+	253	146278412	-	Rsph17025_2377	-	DeoR family transcriptional regulator
2355	 72.08	+1	2425969..2426652	-	227	146278413	-	Rsph17025_2378	-	hypothetical protein
2356	 68.19	0	2426654..2427112	-	152	146278414	-	Rsph17025_2379	-	hypothetical protein
2357	 64.92	0	2427368..2428453	+	361	146278415	-	Rsph17025_2380	-	hypothetical protein
2358	 65.62	0	2428529..2428816	+	95	146278416	-	Rsph17025_2381	-	hypothetical protein
2359	 68.96	0	2428795..2431980	-	1061	146278417	-	Rsph17025_2382	-	acriflavin resistance protein
2360	 73.47	+1	2431973..2432971	-	332	146278418	-	Rsph17025_2383	-	RND family efflux transporter MFP subunit
2361	 68.81	0	2433063..2433950	-	295	146278419	-	Rsph17025_2384	-	cation diffusion facilitator family transporter
2362	 70.90	0	2434081..2434977	-	298	146278420	-	Rsph17025_2385	-	peptidase U32
2363	 69.62	0	2434982..2435962	-	326	146278421	-	Rsph17025_2386	-	peptidase U32
2364	 71.05	0	2435962..2436486	-	174	146278422	-	Rsph17025_2387	-	putative lipid carrier protein-like protein
2365	 70.75	0	2436611..2438104	+	497	146278423	-	Rsph17025_2388	-	UbiD family decarboxylase
2366	 73.51	+1	2438101..2438655	+	184	146278424	-	Rsph17025_2389	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2367	 69.27	0	2438674..2439864	-	396	146278425	-	Rsph17025_2390	-	hypothetical protein
2368	 66.26	0	2439936..2440910	-	324	146278426	-	Rsph17025_2391	-	C4-dicarboxylate transporter/malic acid transport protein
2369	 73.25	+1	2441040..2442557	-	505	146278427	-	Rsph17025_2392	-	kinase-like protein
2370	 63.66	-1	2442705..2443037	+	110	146278428	-	Rsph17025_2393	-	hypothetical protein
2371	 69.43	0	2443160..2443882	+	240	146278429	-	Rsph17025_2394	-	endonuclease/exonuclease/phosphatase
2372	 70.21	0	2443879..2445429	+	516	146278430	-	Rsph17025_2395	-	phospholipase D/transphosphatidylase
2373	 67.56	0	2445650..2446099	+	149	146278431	-	Rsph17025_2396	-	cytochrome c, class II
2374	 68.17	0	2446103..2446699	+	198	146278432	-	Rsph17025_2397	-	cytochrome B561
2375	 69.15	0	2446746..2447390	-	214	146278433	-	Rsph17025_2398	-	L-fuculose-phosphate aldolase
2376	 69.78	0	2447547..2448221	+	224	146278434	-	Rsph17025_2399	-	hypothetical protein
2377	 74.42	+1	2448278..2449774	+	498	146278435	-	Rsph17025_2400	-	hypothetical protein
2378	 65.07	0	2450312..2450686	-	124	146278436	-	Rsph17025_2402	-	IS66 Orf2 family protein
2379	 70.87	0	2450743..2451885	-	380	146278437	-	Rsph17025_2403	-	lysine--tRNA ligase
2380	 64.37	-1	2451897..2452463	+	188	146278438	-	Rsph17025_2404	-	elongation factor P
2381	 70.58	0	2452534..2453913	-	459	146278439	-	Rsph17025_2405	-	fructuronate reductase
2382	 69.97	0	2453903..2454628	-	241	146278440	-	Rsph17025_2406	-	2-deoxy-D-gluconate 3-dehydrogenase
2383	 67.03	0	2454625..2455449	-	274	146278441	-	Rsph17025_2407	-	5-keto-4-deoxyuronate isomerase
2384	 67.66	0	2455461..2455763	-	100	146278442	-	Rsph17025_2408	-	cupin 2 domain-containing protein
2385	 66.74	0	2455772..2457052	-	426	146278443	-	Rsph17025_2409	-	TRAP dicarboxylate transporter, DctM subunit
2386	 67.40	0	2457055..2457600	-	181	146278444	-	Rsph17025_2410	-	tripartite ATP-independent periplasmic transporter DctQ
2387	 63.39	-1	2457659..2458636	-	325	146278445	-	Rsph17025_2411	-	TRAP dicarboxylate transporter, DctP subunit
2388	 68.87	0	2458662..2460068	-	468	146278446	-	Rsph17025_2412	-	glucuronate isomerase
2389	 66.95	0	2460172..2460888	+	238	146278447	-	Rsph17025_2413	-	GntR family transcriptional regulator
2390	 72.72	+1	2460870..2461778	+	302	146278448	-	Rsph17025_2414	-	ribokinase-like domain-containing protein
2391	 71.09	0	2461791..2463215	-	474	146278449	-	Rsph17025_2415	-	hypothetical protein
2392	 72.72	+1	2463215..2465164	-	649	146278450	-	Rsph17025_2416	-	hypothetical protein
2393	 73.17	+1	2465489..2466703	+	404	146278451	-	Rsph17025_2417	-	peptidase S1 and S6, chymotrypsin/Hap
2394	 73.99	+1	2466703..2467794	+	363	146278452	-	Rsph17025_2418	-	hypothetical protein
2395	 70.91	0	2467798..2469093	+	431	146278453	-	Rsph17025_2419	-	hypothetical protein
2396	 72.02	+1	2469090..2471498	+	802	146278454	-	Rsph17025_2420	-	DNA/RNA non-specific endonuclease
2397	 72.18	+1	2471609..2472007	+	132	146278455	-	Rsph17025_2421	-	rhodanese domain-containing protein
2398	 70.05	0	2472034..2472624	+	196	146278456	-	Rsph17025_2422	-	two component LuxR family transcriptional regulator
2399	 72.43	+1	2472851..2474863	+	670	146278457	-	Rsph17025_2423	-	PAS/PAC sensor hybrid histidine kinase
2400	 68.59	0	2474860..2476263	-	467	146278458	-	Rsph17025_2424	-	glycoside hydrolase family protein
2401	 69.03	0	2476436..2477449	-	337	146278459	-	Rsph17025_2425	-	NAD-dependent epimerase/dehydratase
2402	 71.96	+1	2477515..2478591	-	358	146278460	-	Rsph17025_2426	-	hypothetical protein
2403	 71.34	0	2478588..2479679	-	363	146278461	-	Rsph17025_2427	-	hypothetical protein
2404	 72.43	+1	2479679..2480788	-	369	146278462	-	Rsph17025_2428	-	hypothetical protein
2405	 72.57	+1	2480790..2481890	-	366	146278463	-	Rsph17025_2429	-	glycosyl transferase, group 1
2406	 71.00	0	2481887..2483896	-	669	146278464	-	Rsph17025_2430	-	NAD-dependent epimerase/dehydratase
2407	 70.64	0	2483893..2484999	-	368	146278465	-	Rsph17025_2431	-	NAD-dependent epimerase/dehydratase
2408	 70.29	0	2485094..2486224	+	376	146278466	-	Rsph17025_2432	-	alcohol dehydrogenase
2409	 73.88	+1	2486215..2487240	+	341	146278467	-	Rsph17025_2433	-	oxidoreductase domain-containing protein
2410	 67.55	0	2487247..2488041	+	264	146278468	-	Rsph17025_2434	-	Ku domain-containing protein
2411	 71.46	0	2488328..2489329	-	333	146278469	-	Rsph17025_2435	-	alcohol dehydrogenase
2412	 71.57	0	2489382..2490074	-	230	146278470	-	Rsph17025_2436	-	rpsU-divergently transcribed protein
2413	 62.80	-1	2490271..2490477	+	68	146278471	rpsU	Rsph17025_2437	-	30S ribosomal protein S21
2414	 67.81	0	2490713..2491411	+	232	146278472	-	Rsph17025_2438	-	phosphatidylserine decarboxylase
2415	 66.40	0	2491415..2492155	+	246	146278473	-	Rsph17025_2439	-	CDP-alcohol phosphatidyltransferase
2416	 67.64	0	2492180..2492794	+	204	146278474	-	Rsph17025_2440	-	phosphatidylethanolamine N-methyltransferase
2417	 66.67	0	2492849..2493307	-	152	146278475	-	Rsph17025_2441	-	AsnC family transcriptional regulator
2418	 70.87	0	2493448..2494566	+	372	146278476	-	Rsph17025_2442	-	alanine dehydrogenase
2419	 64.40	-1	2494591..2495031	-	146	146278477	-	Rsph17025_2443	-	large conductance mechanosensitive channel protein
2420	 71.01	0	2495133..2495684	-	183	146278478	-	Rsph17025_2444	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2421	 70.13	0	2495706..2497121	+	471	146278479	-	Rsph17025_2445	-	argininosuccinate lyase
2422	 72.60	+1	2497273..2497491	+	72	146278480	-	Rsph17025_2446	-	hypothetical protein
2423	 65.41	0	2497493..2497810	+	105	146278481	-	Rsph17025_2447	-	hypothetical protein
2424	 68.17	0	2497847..2499112	+	421	146278482	-	Rsph17025_2448	-	diaminopimelate decarboxylase
2425	 72.44	+1	2499141..2501633	+	830	146278483	-	Rsph17025_2449	-	hypothetical protein
2426	 75.75	+2	2501702..2502472	-	256	146278484	-	Rsph17025_2450	-	Zinc finger-domain-containing protein
2427	 68.60	0	2502635..2503306	+	223	146278485	-	Rsph17025_2451	-	ABC transporter related
2428	 73.75	+1	2503303..2504205	+	300	146278486	-	Rsph17025_2452	-	hypothetical protein
2429	 67.08	0	2504205..2504930	+	241	146278487	-	Rsph17025_2453	-	phospholipid/glycerol acyltransferase
2430	 71.24	0	2504945..2505535	-	196	146278488	-	Rsph17025_2454	-	GCN5-related N-acetyltransferase
2431	 71.89	+1	2505532..2506890	-	452	146278489	-	Rsph17025_2455	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2432	 72.83	+1	2506887..2507486	-	199	146278490	-	Rsph17025_2456	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2433	 67.51	0	2507545..2508252	+	235	146278491	-	Rsph17025_2457	-	AzlC family protein
2434	 71.47	0	2508249..2508581	+	110	146278492	-	Rsph17025_2458	-	branched-chain amino acid transport
2435	 67.32	0	2508591..2509202	-	203	146278493	-	Rsph17025_2459	-	hypothetical protein
2436	 63.44	-1	2509236..2509421	-	61	146278494	-	Rsph17025_2460	-	aa3 type cytochrome c oxidase subunit IV
2437	 71.21	0	2509482..2510516	-	344	146278495	-	Rsph17025_2461	-	beta-lactamase domain-containing protein
2438	 71.64	0	2510513..2512201	-	562	146278496	-	Rsph17025_2462	-	acyl-CoA dehydrogenase domain-containing protein
2439	 76.14	+2	2512310..2513248	+	312	146278497	-	Rsph17025_2463	-	Sua5/YciO/YrdC/YwlC family protein
2440	 66.15	0	2513255..2513833	-	192	146278498	-	Rsph17025_2464	-	DNA-3-methyladenine glycosylase I
2441	 66.43	0	2513924..2514751	+	275	146278499	-	Rsph17025_2465	-	diguanylate phosphodiesterase
2442	 68.54	0	2514893..2516068	+	391	146278500	-	Rsph17025_2466	-	acetyl-CoA acetyltransferase
2443	 64.74	-1	2516167..2516892	+	241	146278501	-	Rsph17025_2467	-	acetoacetyl-CoA reductase
2444	 57.67	-2	2517031..2517219	-	62	146278502	-	Rsph17025_2468	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.