IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2305	 70.11	0	2374812..2375855	-	347	146278363	-	Rsph17025_2328	-	diguanylate cyclase
2306	 67.37	0	2376023..2377018	-	331	146278364	-	Rsph17025_2329	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2307	 68.15	0	2377166..2377705	+	179	146278365	-	Rsph17025_2330	-	hypothetical protein
2308	 72.69	+1	2377763..2378692	+	309	146278366	-	Rsph17025_2331	-	hypothetical protein
2309	 70.19	0	2378720..2379571	+	283	146278367	-	Rsph17025_2332	-	CHAD domain-containing protein
2310	 71.27	0	2379568..2380587	-	339	146278368	-	Rsph17025_2333	-	diguanylate cyclase
2311	 69.05	0	2380587..2381174	-	195	146278369	-	Rsph17025_2334	-	heme NO binding domain-containing protein
2312	 72.66	+1	2381237..2382955	-	572	146278370	-	Rsph17025_2335	-	hypothetical protein
2313	 71.55	0	2383059..2383754	-	231	146278371	-	Rsph17025_2336	-	HAD family hydrolase
2314	 72.44	+1	2384212..2385597	+	461	146278372	-	Rsph17025_2337	-	response regulator receiver modulated diguanylate cyclase
2315	 72.87	+1	2385679..2386194	-	171	146278373	-	Rsph17025_2338	-	hypothetical protein
2316	 71.43	0	2386198..2386554	-	118	146278374	-	Rsph17025_2339	-	hypothetical protein
2317	 73.40	+1	2386556..2387149	-	197	146278375	-	Rsph17025_2340	-	RNA polymerase sigma factor
2318	 69.60	0	2387231..2387605	-	124	146278376	-	Rsph17025_2341	-	signal transduction protein
2319	 66.18	0	2388065..2388475	+	136	146278377	-	Rsph17025_2342	-	hypothetical protein
2320	 73.51	+1	2388444..2389130	+	228	146278378	-	Rsph17025_2343	-	NUDIX hydrolase
2321	 70.93	0	2389138..2389512	-	124	146278379	-	Rsph17025_2344	-	hypothetical protein
2322	 74.01	+1	2389528..2390031	-	167	146278380	-	Rsph17025_2345	-	Lipocalin family protein
2323	 71.99	+1	2390019..2390450	-	143	146278381	-	Rsph17025_2346	-	hypothetical protein
2324	 70.02	0	2390533..2391576	-	347	146278382	-	Rsph17025_2347	-	aldo/keto reductase
2325	 75.76	+2	2391682..2392275	+	197	146278383	-	Rsph17025_2348	-	hypothetical protein
2326	 66.72	0	2392383..2394101	+	572	146278384	-	Rsph17025_2349	-	methionyl-tRNA synthetase
2327	 69.43	0	2394240..2396738	-	832	146278385	-	Rsph17025_2350	-	cyclic nucleotide-binding protein
2328	 62.12	-1	2396814..2397143	-	109	146278386	-	Rsph17025_2351	-	hypothetical protein
2329	 71.15	0	2397444..2398760	-	438	146278387	-	Rsph17025_2352	-	polyferredoxin-like protein
2330	 69.31	0	2398906..2400762	+	618	146278388	-	Rsph17025_2353	-	ABC transporter related
2331	 67.12	0	2400805..2401023	-	72	146278389	-	Rsph17025_2354	-	hypothetical protein
2332	 73.50	+1	2401230..2402165	+	311	146278390	-	Rsph17025_2355	-	cobalamin biosynthesis protein CobD
2333	 66.99	0	2402181..2403401	-	406	146278391	-	Rsph17025_2356	-	SufS subfamily cysteine desulfurase
2334	 68.39	0	2403410..2403988	-	192	146278392	-	Rsph17025_2357	-	hypothetical protein
2335	 66.67	0	2403985..2404464	-	159	146278393	-	Rsph17025_2358	-	hypothetical protein
2336	 66.98	0	2404465..2405748	-	427	146278394	-	Rsph17025_2359	-	SufBD protein
2337	 64.43	-1	2405748..2406506	-	252	146278395	-	Rsph17025_2360	-	FeS assembly ATPase SufC
2338	 66.35	0	2406516..2406827	-	103	146278396	-	Rsph17025_2361	-	hypothetical protein
2339	 64.18	-1	2407036..2408565	-	509	146278397	-	Rsph17025_2362	-	cysteine desulfurase activator complex subunit SufB
2340	 70.77	0	2408641..2409687	-	348	146278398	-	Rsph17025_2363	-	cysteine desulfurase
2341	 62.61	-1	2409769..2410236	-	155	146278399	-	Rsph17025_2364	-	BadM/Rrf2 family transcriptional regulator
2342	 61.98	-1	2410324..2411049	+	241	146278400	-	Rsph17025_2365	-	alpha/beta fold family hydrolase-like protein
2343	 68.89	0	2411046..2411630	+	194	146278401	-	Rsph17025_2366	-	HD superfamily hydrolase-like protein
2344	 64.44	-1	2411716..2412930	+	404	146278402	-	Rsph17025_2367	-	isocitrate dehydrogenase
2345	 65.04	0	2413130..2413744	+	204	146278403	-	Rsph17025_2368	-	hypothetical protein
2346	 67.44	0	2413843..2415663	+	606	146278404	-	Rsph17025_2369	-	GTP-binding protein TypA
2347	 69.94	0	2415698..2416492	-	264	146278405	-	Rsph17025_2370	-	glutamine amidotransferase-like protein
2348	 68.73	0	2416645..2416935	-	96	146278406	-	Rsph17025_2371	-	hypothetical protein
2349	 66.97	0	2416937..2419588	-	883	146278407	alaS	Rsph17025_2372	-	alanyl-tRNA synthetase
2350	 61.92	-1	2419676..2420749	-	357	146278408	recA	Rsph17025_2373	-	recombinase A
2351	 63.62	-1	2420947..2421537	+	196	146278409	-	Rsph17025_2374	-	hypothetical protein
2352	 66.54	0	2421541..2423841	-	766	146278410	-	Rsph17025_2375	-	integral membrane sensor hybrid histidine kinase
2353	 73.92	+1	2423945..2425144	-	399	146278411	-	Rsph17025_2376	-	Fmu (Sun) domain-containing protein
2354	 67.85	0	2425198..2425959	+	253	146278412	-	Rsph17025_2377	-	DeoR family transcriptional regulator
2355	 72.08	+1	2425969..2426652	-	227	146278413	-	Rsph17025_2378	-	hypothetical protein
2356	 68.19	0	2426654..2427112	-	152	146278414	-	Rsph17025_2379	-	hypothetical protein
2357	 64.92	0	2427368..2428453	+	361	146278415	-	Rsph17025_2380	-	hypothetical protein
2358	 65.62	0	2428529..2428816	+	95	146278416	-	Rsph17025_2381	-	hypothetical protein
2359	 68.96	0	2428795..2431980	-	1061	146278417	-	Rsph17025_2382	-	acriflavin resistance protein
2360	 73.47	+1	2431973..2432971	-	332	146278418	-	Rsph17025_2383	-	RND family efflux transporter MFP subunit
2361	 68.81	0	2433063..2433950	-	295	146278419	-	Rsph17025_2384	-	cation diffusion facilitator family transporter
2362	 70.90	0	2434081..2434977	-	298	146278420	-	Rsph17025_2385	-	peptidase U32
2363	 69.62	0	2434982..2435962	-	326	146278421	-	Rsph17025_2386	-	peptidase U32
2364	 71.05	0	2435962..2436486	-	174	146278422	-	Rsph17025_2387	-	putative lipid carrier protein-like protein
2365	 70.75	0	2436611..2438104	+	497	146278423	-	Rsph17025_2388	-	UbiD family decarboxylase
2366	 73.51	+1	2438101..2438655	+	184	146278424	-	Rsph17025_2389	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2367	 69.27	0	2438674..2439864	-	396	146278425	-	Rsph17025_2390	-	hypothetical protein
2368	 66.26	0	2439936..2440910	-	324	146278426	-	Rsph17025_2391	-	C4-dicarboxylate transporter/malic acid transport protein
2369	 73.25	+1	2441040..2442557	-	505	146278427	-	Rsph17025_2392	-	kinase-like protein
2370	 63.66	-1	2442705..2443037	+	110	146278428	-	Rsph17025_2393	-	hypothetical protein
2371	 69.43	0	2443160..2443882	+	240	146278429	-	Rsph17025_2394	-	endonuclease/exonuclease/phosphatase
2372	 70.21	0	2443879..2445429	+	516	146278430	-	Rsph17025_2395	-	phospholipase D/transphosphatidylase
2373	 67.56	0	2445650..2446099	+	149	146278431	-	Rsph17025_2396	-	cytochrome c, class II
2374	 68.17	0	2446103..2446699	+	198	146278432	-	Rsph17025_2397	-	cytochrome B561
2375	 69.15	0	2446746..2447390	-	214	146278433	-	Rsph17025_2398	-	L-fuculose-phosphate aldolase
2376	 69.78	0	2447547..2448221	+	224	146278434	-	Rsph17025_2399	-	hypothetical protein
2377	 74.42	+1	2448278..2449774	+	498	146278435	-	Rsph17025_2400	-	hypothetical protein
2378	 65.07	0	2450312..2450686	-	124	146278436	-	Rsph17025_2402	-	IS66 Orf2 family protein
2379	 70.87	0	2450743..2451885	-	380	146278437	-	Rsph17025_2403	-	lysine--tRNA ligase
2380	 64.37	-1	2451897..2452463	+	188	146278438	-	Rsph17025_2404	-	elongation factor P
2381	 70.58	0	2452534..2453913	-	459	146278439	-	Rsph17025_2405	-	fructuronate reductase
2382	 69.97	0	2453903..2454628	-	241	146278440	-	Rsph17025_2406	-	2-deoxy-D-gluconate 3-dehydrogenase
2383	 67.03	0	2454625..2455449	-	274	146278441	-	Rsph17025_2407	-	5-keto-4-deoxyuronate isomerase
2384	 67.66	0	2455461..2455763	-	100	146278442	-	Rsph17025_2408	-	cupin 2 domain-containing protein
2385	 66.74	0	2455772..2457052	-	426	146278443	-	Rsph17025_2409	-	TRAP dicarboxylate transporter, DctM subunit
2386	 67.40	0	2457055..2457600	-	181	146278444	-	Rsph17025_2410	-	tripartite ATP-independent periplasmic transporter DctQ
2387	 63.39	-1	2457659..2458636	-	325	146278445	-	Rsph17025_2411	-	TRAP dicarboxylate transporter, DctP subunit
2388	 68.87	0	2458662..2460068	-	468	146278446	-	Rsph17025_2412	-	glucuronate isomerase
2389	 66.95	0	2460172..2460888	+	238	146278447	-	Rsph17025_2413	-	GntR family transcriptional regulator
2390	 72.72	+1	2460870..2461778	+	302	146278448	-	Rsph17025_2414	-	ribokinase-like domain-containing protein
2391	 71.09	0	2461791..2463215	-	474	146278449	-	Rsph17025_2415	-	hypothetical protein
2392	 72.72	+1	2463215..2465164	-	649	146278450	-	Rsph17025_2416	-	hypothetical protein
2393	 73.17	+1	2465489..2466703	+	404	146278451	-	Rsph17025_2417	-	peptidase S1 and S6, chymotrypsin/Hap
2394	 73.99	+1	2466703..2467794	+	363	146278452	-	Rsph17025_2418	-	hypothetical protein
2395	 70.91	0	2467798..2469093	+	431	146278453	-	Rsph17025_2419	-	hypothetical protein
2396	 72.02	+1	2469090..2471498	+	802	146278454	-	Rsph17025_2420	-	DNA/RNA non-specific endonuclease
2397	 72.18	+1	2471609..2472007	+	132	146278455	-	Rsph17025_2421	-	rhodanese domain-containing protein
2398	 70.05	0	2472034..2472624	+	196	146278456	-	Rsph17025_2422	-	two component LuxR family transcriptional regulator
2399	 72.43	+1	2472851..2474863	+	670	146278457	-	Rsph17025_2423	-	PAS/PAC sensor hybrid histidine kinase
2400	 68.59	0	2474860..2476263	-	467	146278458	-	Rsph17025_2424	-	glycoside hydrolase family protein
2401	 69.03	0	2476436..2477449	-	337	146278459	-	Rsph17025_2425	-	NAD-dependent epimerase/dehydratase
2402	 71.96	+1	2477515..2478591	-	358	146278460	-	Rsph17025_2426	-	hypothetical protein
2403	 71.34	0	2478588..2479679	-	363	146278461	-	Rsph17025_2427	-	hypothetical protein
2404	 72.43	+1	2479679..2480788	-	369	146278462	-	Rsph17025_2428	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.