IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2191	 67.96	0	2245610..2246695	-	361	146278249	-	Rsph17025_2213	-	histidinol-phosphate aminotransferase
2192	 62.96	-1	2246911..2247531	-	206	146278250	rpsD	Rsph17025_2214	-	30S ribosomal protein S4
2193	 70.34	0	2247723..2248430	-	235	146278251	-	Rsph17025_2215	-	two component transcriptional regulator
2194	 70.88	0	2248427..2250349	-	640	146278252	-	Rsph17025_2216	-	PAS/PAC sensor hybrid histidine kinase
2195	 65.65	0	2250610..2252571	+	653	146278253	-	Rsph17025_2217	-	AMP-dependent synthetase and ligase
2196	 64.36	-1	2252568..2253392	+	274	146278254	-	Rsph17025_2218	-	ABC transporter related
2197	 64.95	0	2253512..2254501	+	329	146278255	-	Rsph17025_2219	-	inner-membrane translocator
2198	 64.44	-1	2254505..2255581	+	358	146278256	-	Rsph17025_2220	-	inner-membrane translocator
2199	 65.74	0	2255643..2256932	+	429	146278257	-	Rsph17025_2221	-	ABC-type branched-chain amino acid transport systems periplasmic component-like protein
2200	 66.55	0	2256986..2257816	+	276	146278258	-	Rsph17025_2222	-	ABC transporter related
2201	 70.21	0	2257831..2259045	+	404	146278259	-	Rsph17025_2223	-	coenzyme F390 synthetase-like protein
2202	 72.58	+1	2259564..2260223	-	219	146278260	-	Rsph17025_2224	-	N-acetylmuramoyl-L-alanine amidase
2203	 71.38	0	2260227..2261054	-	275	146278261	-	Rsph17025_2225	-	hypothetical protein
2204	 67.89	0	2261069..2262544	-	491	146278262	gatA	Rsph17025_2226	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
2205	 67.71	0	2262541..2262828	-	95	146278263	-	Rsph17025_2227	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
2206	 70.81	0	2262860..2263510	-	216	146278264	-	Rsph17025_2228	-	hypothetical protein
2207	 67.10	0	2263627..2264319	+	230	146278265	-	Rsph17025_2229	-	beta-lactamase domain-containing protein
2208	 73.04	+1	2264376..2264720	-	114	146278266	-	Rsph17025_2230	-	CMP/dCMP deaminase, zinc-binding
2209	 76.02	+2	2264989..2266389	+	466	146278267	-	Rsph17025_2231	-	RNA-binding S4 domain-containing protein
2210	 73.27	+1	2266544..2267422	+	292	146278268	-	Rsph17025_2232	-	hypothetical protein
2211	 68.60	0	2267583..2268773	+	396	146278269	-	Rsph17025_2233	-	toxic anion resistance family protein
2212	 69.57	0	2268786..2269751	+	321	146278270	-	Rsph17025_2234	-	hypothetical protein
2213	 69.64	0	2269770..2270879	+	369	146278271	-	Rsph17025_2235	-	putative virion core protein (lumpy skin disease virus)-like protein
2214	 71.13	0	2270881..2271978	+	365	146278272	-	Rsph17025_2236	-	hypothetical protein
2215	 73.52	+1	2271982..2272419	+	145	146278273	-	Rsph17025_2237	-	membrane protein-like protein
2216	 67.60	0	2272518..2273477	+	319	146278274	-	Rsph17025_2238	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2217	 72.31	+1	2273490..2274410	+	306	146278275	-	Rsph17025_2239	-	ribokinase-like domain-containing protein
2218	 70.60	0	2274431..2274862	+	143	146278276	-	Rsph17025_2240	-	D-tyrosyl-tRNA deacylase
2219	 68.41	0	2274966..2276855	-	629	146278277	-	Rsph17025_2241	-	acyl-CoA synthetase
2220	 69.63	0	2276961..2278748	-	595	146278278	-	Rsph17025_2242	-	lipid ABC transporter ATPase/inner membrane protein
2221	 71.64	0	2278934..2279758	+	274	146278279	-	Rsph17025_2243	-	alpha/beta hydrolase fold
2222	 74.44	+1	2279755..2280732	+	325	146278280	-	Rsph17025_2244	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
2223	 70.22	0	2280856..2281644	+	262	146278281	-	Rsph17025_2245	-	3-oxoadipate enol-lactonase
2224	 71.63	0	2281637..2282362	+	241	146278282	-	Rsph17025_2246	-	hypothetical protein
2225	 71.00	0	2282393..2283592	+	399	146278283	-	Rsph17025_2247	-	major facilitator transporter
2226	 69.70	0	2283668..2285680	-	670	146278284	-	Rsph17025_2248	-	elongation factor G
2227	 67.52	0	2285917..2286504	+	195	146278285	hisB	Rsph17025_2249	-	imidazoleglycerol-phosphate dehydratase
2228	 67.14	0	2286504..2287142	+	212	146278286	hisH	Rsph17025_2250	-	imidazole glycerol phosphate synthase subunit HisH
2229	 72.22	+1	2287300..2288019	+	239	146278287	-	Rsph17025_2251	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2230	 70.87	0	2288161..2288922	+	253	146278288	-	Rsph17025_2252	-	imidazole glycerol phosphate synthase subunit HisF
2231	 71.79	0	2288919..2289230	+	103	146278289	hisE	Rsph17025_2253	-	phosphoribosyl-ATP pyrophosphatase
2232	 70.50	0	2289349..2289765	-	138	146278290	-	Rsph17025_2254	-	CoA-binding domain-containing protein
2233	 71.50	0	2289941..2290726	-	261	146278291	-	Rsph17025_2255	-	RNA methyltransferase
2234	 66.73	0	2291469..2292992	-	507	146278292	-	Rsph17025_2256	-	EmrB/QacA family drug resistance transporter
2235	 72.63	+1	2293000..2294106	-	368	146278293	-	Rsph17025_2257	-	secretion protein HlyD family protein
2236	 68.80	0	2294103..2294570	-	155	146278294	-	Rsph17025_2258	-	MarR family transcriptional regulator
2237	 72.98	+1	2294704..2295717	+	337	146278295	-	Rsph17025_2259	-	beta-lactamase
2238	 68.80	0	2295784..2297004	+	406	146278296	-	Rsph17025_2260	-	radical SAM domain-containing protein
2239	 73.05	+1	2297004..2298461	+	485	146278297	-	Rsph17025_2261	-	phage SPO1 DNA polymerase-related protein
2240	 65.49	0	2298491..2298745	-	84	146278298	-	Rsph17025_2262	-	hypothetical protein
2241	 71.75	0	2298949..2299263	-	104	146278299	-	Rsph17025_2263	-	response regulator receiver/SARP domain-containing protein
2242	 68.44	0	2299283..2302780	-	1165	146278300	-	Rsph17025_2264	-	putative PAS/PAC sensor protein
2243	 67.58	0	2302785..2303444	-	219	146278301	-	Rsph17025_2265	-	hypothetical protein
2244	 72.85	+1	2303636..2304865	+	409	146278302	-	Rsph17025_2266	-	glucose-1-phosphate adenylyltransferase
2245	 68.35	0	2304862..2306937	+	691	146278303	-	Rsph17025_2267	-	glycogen debranching enzyme GlgX
2246	 67.86	0	2307042..2307713	-	223	146278304	-	Rsph17025_2268	-	hypothetical protein
2247	 73.49	+1	2307946..2309118	+	390	146278305	-	Rsph17025_2269	-	RND family efflux transporter MFP subunit
2248	 69.52	0	2309123..2312272	+	1049	146278306	-	Rsph17025_2270	-	acriflavin resistance protein
2249	 74.03	+1	2312413..2312670	+	85	146278307	-	Rsph17025_2271	-	hypothetical protein
2250	 66.82	0	2312784..2314088	+	434	146278308	-	Rsph17025_2272	-	adenylosuccinate lyase
2251	 66.67	0	2314216..2314371	+	51	146278309	-	Rsph17025_2273	-	hypothetical protein
2252	 69.65	0	2314431..2315501	+	356	146278310	-	Rsph17025_2274	-	flagellar motor switch protein FliG
2253	 68.93	0	2315692..2316573	+	293	146278311	-	Rsph17025_2275	-	lipid A biosynthesis acyltransferase
2254	 71.04	0	2316596..2317144	-	182	146278312	-	Rsph17025_2276	-	ErfK/YbiS/YcfS/YnhG family protein
2255	 68.29	0	2317359..2318222	+	287	146278313	-	Rsph17025_2277	-	aminotransferase
2256	 66.67	0	2318276..2318731	+	151	146278314	-	Rsph17025_2278	-	UspA domain-containing protein
2257	 67.56	0	2318915..2319475	+	186	146278315	-	Rsph17025_2279	-	NifU domain-containing protein
2258	 75.37	+2	2319465..2320073	+	202	146278316	-	Rsph17025_2280	-	peptidase M22, glycoprotease
2259	 77.43	+2	2320070..2320552	+	160	146278317	-	Rsph17025_2281	-	GCN5-related N-acetyltransferase
2260	 66.67	0	2320707..2321702	+	331	146278318	-	Rsph17025_2282	-	basic membrane lipoprotein
2261	 68.63	0	2321705..2323282	+	525	146278319	-	Rsph17025_2283	-	ABC transporter related
2262	 68.86	0	2323282..2324376	+	364	146278320	-	Rsph17025_2284	-	inner-membrane translocator
2263	 68.94	0	2324376..2325341	+	321	146278321	-	Rsph17025_2285	-	inner-membrane translocator
2264	 72.03	+1	2325343..2326143	+	266	146278322	-	Rsph17025_2286	-	purine nucleoside phosphorylase
2265	 66.78	0	2326228..2327148	+	306	146278323	-	Rsph17025_2287	-	hypothetical protein
2266	 68.25	0	2327145..2327903	+	252	146278324	-	Rsph17025_2288	-	hypothetical protein
2267	 69.23	0	2327913..2328419	-	168	146278325	-	Rsph17025_2289	-	thioesterase superfamily protein
2268	 66.14	0	2329009..2329389	+	126	146278326	-	Rsph17025_2291	-	MerR family transcriptional regulator
2269	 67.68	0	2329513..2329908	+	131	146278327	-	Rsph17025_2292	-	MerR family transcriptional regulator
2270	 67.17	0	2329929..2331704	+	591	146278328	-	Rsph17025_2293	-	acyl-CoA dehydrogenase domain-containing protein
2271	 72.89	+1	2331726..2332175	+	149	146278329	-	Rsph17025_2294	-	glutathione-dependent formaldehyde-activating, GFA
2272	 68.56	0	2332248..2333459	+	403	146278330	-	Rsph17025_2295	-	acetyl-CoA acetyltransferase
2273	 68.53	0	2333474..2335675	+	733	146278331	-	Rsph17025_2296	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
2274	 69.31	0	2335728..2338598	-	956	146278332	-	Rsph17025_2297	-	glycine dehydrogenase
2275	 60.78	-2	2338602..2338958	-	118	146278333	-	Rsph17025_2298	-	glycine cleavage system protein H
2276	 71.84	+1	2338967..2340145	-	392	146278334	-	Rsph17025_2299	-	glycine cleavage system aminomethyltransferase T
2277	 66.24	0	2340533..2342662	-	709	146278335	-	Rsph17025_2300	-	methylmalonyl-CoA mutase
2278	 66.67	0	2342755..2343198	+	147	146278336	-	Rsph17025_2301	-	hypothetical protein
2279	 66.62	0	2343200..2345200	-	666	146278337	-	Rsph17025_2302	-	carbamoyl-phosphate synthase L chain, ATP-binding
2280	 74.12	+1	2345347..2345574	-	75	146278338	-	Rsph17025_2303	-	hypothetical protein
2281	 67.41	0	2345888..2346289	-	133	146278339	-	Rsph17025_2304	-	hypothetical protein
2282	 64.58	-1	2347185..2348717	-	510	146278340	-	Rsph17025_2305	-	propionyl-CoA carboxylase
2283	 58.47	-2	2348847..2349200	+	117	146278341	-	Rsph17025_2306	-	hypothetical protein
2284	 68.80	0	2349236..2350456	+	406	146278342	-	Rsph17025_2307	-	Bcr/CflA subfamily drug resistance transporter
2285	 69.91	0	2350518..2351903	+	461	146278343	-	Rsph17025_2308	-	hypothetical protein
2286	 71.32	0	2352211..2352855	-	214	146278344	-	Rsph17025_2309	-	nuclease
2287	 69.34	0	2352958..2354604	-	548	146278345	-	Rsph17025_2310	-	choline dehydrogenase
2288	 71.07	0	2354614..2356065	-	483	146278346	-	Rsph17025_2311	-	betaine aldehyde dehydrogenase
2289	 66.84	0	2356062..2356646	-	194	146278347	-	Rsph17025_2312	-	transcriptional regulator BetI
2290	 64.83	-1	2356735..2357661	+	308	146278348	-	Rsph17025_2313	-	substrate-binding region of ABC-type glycine betaine transport system
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.