IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2106	 68.33	0	2158270..2158569	-	99	146278164	-	Rsph17025_2127	-	hypothetical protein
2107	 62.07	-1	2158656..2159351	+	231	146278165	-	Rsph17025_2128	-	putative phage repressor
2108	 66.19	0	2160686..2161105	+	139	146278166	-	Rsph17025_2129	-	HNH endonuclease
2109	 62.47	-1	2161300..2161704	-	134	146278167	-	Rsph17025_2130	-	integrase catalytic subunit
2110	 65.48	0	2163560..2164483	+	307	146278168	-	Rsph17025_2132	-	IstB ATP binding domain-containing protein
2111	 63.08	-1	2164504..2164893	+	129	146278169	-	Rsph17025_2133	-	transposase, IS4 family protein
2112	 63.14	-1	2164890..2165201	+	103	146278170	-	Rsph17025_2134	-	IstB ATP binding domain-containing protein
2113	 66.67	0	2165374..2165568	-	64	146278171	-	Rsph17025_2135	-	DNA replication protein-like protein
2114	 65.08	0	2165664..2165852	-	62	146278172	-	Rsph17025_2136	-	prevent-host-death family protein
2115	 71.26	0	2166588..2167196	-	202	146278173	-	Rsph17025_2137	-	lysine exporter protein LysE/YggA
2116	 66.44	0	2167193..2167636	-	147	146278174	-	Rsph17025_2138	-	AsnC family transcriptional regulator
2117	 67.51	0	2167775..2168368	-	197	146278175	-	Rsph17025_2139	-	hypothetical protein
2118	 69.81	0	2168584..2170395	-	603	146278176	-	Rsph17025_2140	-	ABC transporter related
2119	 73.28	+1	2170453..2171616	-	387	146278177	-	Rsph17025_2141	-	lipid-A-disaccharide synthase
2120	 75.55	+2	2171613..2172434	-	273	146278178	-	Rsph17025_2142	-	hypothetical protein
2121	 70.50	0	2172431..2173213	-	260	146278179	-	Rsph17025_2143	-	UDP-N-acetylglucosamine acyltransferase
2122	 65.17	0	2173217..2173684	-	155	146278180	-	Rsph17025_2144	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
2123	 75.31	+2	2173770..2174417	-	215	146278181	-	Rsph17025_2145	-	outer membrane chaperone Skp (OmpH)
2124	 65.20	0	2174417..2176795	-	792	146278182	-	Rsph17025_2146	-	surface antigen (D15)
2125	 68.72	0	2176907..2177101	-	64	146278183	-	Rsph17025_2147	-	hypothetical protein
2126	 68.76	0	2177213..2178547	-	444	146278184	-	Rsph17025_2148	-	putative membrane-associated zinc metalloprotease
2127	 68.61	0	2178554..2179738	-	394	146278185	-	Rsph17025_2149	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2128	 69.10	0	2179747..2180568	-	273	146278186	-	Rsph17025_2150	-	phosphatidate cytidylyltransferase
2129	 69.51	0	2180565..2181302	-	245	146278187	-	Rsph17025_2151	-	undecaprenyl diphosphate synthase
2130	 65.43	0	2181375..2181941	-	188	146278188	-	Rsph17025_2152	-	ribosome recycling factor
2131	 67.07	0	2182028..2182768	-	246	146278189	-	Rsph17025_2153	-	uridylate kinase
2132	 72.37	+1	2182917..2183792	+	291	146278190	-	Rsph17025_2154	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2133	 71.59	0	2183868..2184659	+	263	146278191	-	Rsph17025_2155	-	helix-turn-helix domain-containing protein
2134	 68.75	0	2184746..2186377	+	543	146278192	-	Rsph17025_2156	-	extracellular solute-binding protein
2135	 69.71	0	2186421..2187407	+	328	146278193	-	Rsph17025_2157	-	binding-protein-dependent transport systems inner membrane component
2136	 69.70	0	2187407..2188561	+	384	146278194	-	Rsph17025_2158	-	binding-protein-dependent transport systems inner membrane component
2137	 74.21	+1	2188554..2190608	+	684	146278195	-	Rsph17025_2159	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
2138	 68.58	0	2190580..2192043	-	487	146278196	engA	Rsph17025_2160	-	GTP-binding protein EngA
2139	 72.67	+1	2192102..2193466	-	454	146278197	-	Rsph17025_2161	-	Pyrrolo-quinoline quinone
2140	 73.92	+1	2193495..2194142	-	215	146278198	-	Rsph17025_2162	-	hypothetical protein
2141	 67.23	0	2194376..2195263	+	295	146278199	-	Rsph17025_2163	-	hypothetical protein
2142	 63.71	-1	2195315..2196463	+	382	146278200	-	Rsph17025_2164	-	membrane protein involved in aromatic hydrocarbon degradation
2143	 65.86	0	2196636..2197505	+	289	146278201	-	Rsph17025_2165	-	hypothetical protein
2144	 63.07	-1	2197533..2198450	+	305	146278202	-	Rsph17025_2166	-	homoserine O-succinyltransferase
2145	 70.65	0	2198440..2199393	+	317	146278203	-	Rsph17025_2167	-	alpha/beta hydrolase fold
2146	 66.89	0	2199435..2200319	+	294	146278204	-	Rsph17025_2168	-	hypothetical protein
2147	 69.58	0	2200316..2200933	+	205	146278205	-	Rsph17025_2169	-	TetR family transcriptional regulator
2148	 68.03	0	2201053..2202150	-	365	146278206	-	Rsph17025_2170	-	spermidine/putrescine ABC transporter ATPase subunit
2149	 64.44	-1	2202147..2202953	-	268	146278207	-	Rsph17025_2171	-	binding-protein-dependent transport systems inner membrane component
2150	 63.29	-1	2202950..2203837	-	295	146278208	-	Rsph17025_2172	-	binding-protein-dependent transport systems inner membrane component
2151	 72.29	+1	2203916..2205319	-	467	146278209	-	Rsph17025_2173	-	GntR family transcriptional regulator
2152	 73.33	+1	2205404..2205628	+	74	146278210	-	Rsph17025_2174	-	hypothetical protein
2153	 67.70	0	2205754..2206236	-	160	146278211	rpsI	Rsph17025_2175	-	30S ribosomal protein S9
2154	 63.87	-1	2206240..2206704	-	154	146278212	rplM	Rsph17025_2176	-	50S ribosomal protein L13
2155	 72.62	+1	2206916..2207704	-	262	146278213	-	Rsph17025_2177	-	hypothetical protein
2156	 65.54	0	2208273..2208806	+	177	146278214	-	Rsph17025_2178	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2157	 68.00	0	2208846..2210195	-	449	146278215	-	Rsph17025_2179	-	SAF domain-containing protein
2158	 66.29	0	2210192..2211247	-	351	146278216	-	Rsph17025_2180	-	NAD-dependent epimerase/dehydratase
2159	 74.49	+1	2211437..2212228	-	263	146278217	-	Rsph17025_2181	-	hypothetical protein
2160	 72.47	+1	2212474..2213472	+	332	146278218	-	Rsph17025_2182	-	short chain dehydrogenase
2161	 66.60	0	2213636..2215135	+	499	146278219	-	Rsph17025_2183	-	Acetyl-CoA hydrolase
2162	 69.43	0	2215152..2217650	-	832	146278220	-	Rsph17025_2184	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
2163	 69.54	0	2217703..2217876	-	57	146278221	-	Rsph17025_2185	-	hypothetical protein
2164	 72.26	+1	2218137..2218958	+	273	146278222	-	Rsph17025_2186	-	hypothetical protein
2165	 67.88	0	2218999..2219985	-	328	146278223	-	Rsph17025_2187	-	glyoxylate reductase
2166	 69.36	0	2220084..2220677	+	197	146278224	-	Rsph17025_2188	-	hypothetical protein
2167	 65.39	0	2220978..2222618	-	546	146278225	groEL	Rsph17025_2189	-	chaperonin GroEL
2168	 63.54	-1	2222703..2222990	-	95	146278226	groES	Rsph17025_2190	-	co-chaperonin GroES
2169	 71.43	0	2223178..2224164	+	328	146278227	-	Rsph17025_2191	-	GumN family protein
2170	 71.93	+1	2224217..2224330	-	37	146278228	-	Rsph17025_2192	-	hypothetical protein
2171	 65.80	0	2224645..2225562	+	305	146278229	-	Rsph17025_2193	-	putative manganese-dependent inorganic pyrophosphatase
2172	 68.90	0	2225697..2226590	+	297	146278230	-	Rsph17025_2194	-	HAD family hydrolase
2173	 64.64	-1	2226805..2227248	+	147	146278231	-	Rsph17025_2195	-	dehydratase
2174	 68.19	0	2227276..2228196	+	306	146278232	-	Rsph17025_2196	-	riboflavin biosynthesis protein RibF
2175	 67.75	0	2228236..2228697	+	153	146278233	-	Rsph17025_2197	-	hypothetical protein
2176	 72.71	+1	2228697..2229722	+	341	146278234	-	Rsph17025_2198	-	threonine aldolase
2177	 64.31	-1	2229864..2230883	+	339	146278235	-	Rsph17025_2199	-	ribose-phosphate pyrophosphokinase
2178	 69.17	0	2231062..2231460	-	132	146278236	-	Rsph17025_2200	-	F0F1 ATP synthase subunit epsilon
2179	 66.04	0	2231470..2232897	-	475	146278237	-	Rsph17025_2201	-	F0F1 ATP synthase subunit beta
2180	 66.21	0	2232915..2233784	-	289	146278238	-	Rsph17025_2202	-	F0F1 ATP synthase subunit gamma
2181	 65.69	0	2233807..2235345	-	512	146278239	-	Rsph17025_2203	-	F0F1 ATP synthase subunit alpha
2182	 66.49	0	2235346..2235906	-	186	146278240	-	Rsph17025_2204	-	ATP synthase F1, delta subunit
2183	 69.46	0	2236211..2236999	-	262	146278241	-	Rsph17025_2205	-	hypothetical protein
2184	 66.67	0	2237063..2237830	+	255	146278242	-	Rsph17025_2206	-	hydroxyacylglutathione hydrolase
2185	 65.52	0	2237960..2240311	+	783	146278243	-	Rsph17025_2207	-	ATP-dependent Clp protease, ATP-binding subunit clpA
2186	 70.98	0	2240425..2242002	-	525	146278244	-	Rsph17025_2208	-	hypothetical protein
2187	 68.28	0	2242006..2243181	-	391	146278245	-	Rsph17025_2209	-	hypothetical protein
2188	 67.76	0	2243254..2243802	-	182	146278246	-	Rsph17025_2210	-	ChaC family protein
2189	 72.11	+1	2243806..2244669	-	287	146278247	-	Rsph17025_2211	-	extensin family protein
2190	 69.02	0	2244675..2245610	-	311	146278248	-	Rsph17025_2212	-	cyclohexadienyl dehydrogenase
2191	 67.96	0	2245610..2246695	-	361	146278249	-	Rsph17025_2213	-	histidinol-phosphate aminotransferase
2192	 62.96	-1	2246911..2247531	-	206	146278250	rpsD	Rsph17025_2214	-	30S ribosomal protein S4
2193	 70.34	0	2247723..2248430	-	235	146278251	-	Rsph17025_2215	-	two component transcriptional regulator
2194	 70.88	0	2248427..2250349	-	640	146278252	-	Rsph17025_2216	-	PAS/PAC sensor hybrid histidine kinase
2195	 65.65	0	2250610..2252571	+	653	146278253	-	Rsph17025_2217	-	AMP-dependent synthetase and ligase
2196	 64.36	-1	2252568..2253392	+	274	146278254	-	Rsph17025_2218	-	ABC transporter related
2197	 64.95	0	2253512..2254501	+	329	146278255	-	Rsph17025_2219	-	inner-membrane translocator
2198	 64.44	-1	2254505..2255581	+	358	146278256	-	Rsph17025_2220	-	inner-membrane translocator
2199	 65.74	0	2255643..2256932	+	429	146278257	-	Rsph17025_2221	-	ABC-type branched-chain amino acid transport systems periplasmic component-like protein
2200	 66.55	0	2256986..2257816	+	276	146278258	-	Rsph17025_2222	-	ABC transporter related
2201	 70.21	0	2257831..2259045	+	404	146278259	-	Rsph17025_2223	-	coenzyme F390 synthetase-like protein
2202	 72.58	+1	2259564..2260223	-	219	146278260	-	Rsph17025_2224	-	N-acetylmuramoyl-L-alanine amidase
2203	 71.38	0	2260227..2261054	-	275	146278261	-	Rsph17025_2225	-	hypothetical protein
2204	 67.89	0	2261069..2262544	-	491	146278262	gatA	Rsph17025_2226	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
2205	 67.71	0	2262541..2262828	-	95	146278263	-	Rsph17025_2227	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.