IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2060	 69.04	0	2122462..2123514	-	350	146278118	-	Rsph17025_2081	-	hypothetical protein
2061	 66.07	0	2123514..2123846	-	110	146278119	-	Rsph17025_2082	-	hypothetical protein
2062	 74.74	+1	2123855..2125093	-	412	146278120	-	Rsph17025_2083	-	hypothetical protein
2063	 65.82	0	2125144..2125737	-	197	146278121	-	Rsph17025_2084	-	hypothetical protein
2064	 68.33	0	2125737..2129402	-	1221	146278122	-	Rsph17025_2085	-	hypothetical protein
2065	 73.04	+1	2129399..2129806	-	135	146278123	-	Rsph17025_2086	-	hypothetical protein
2066	 73.36	+1	2129803..2130459	-	218	146278124	-	Rsph17025_2087	-	hypothetical protein
2067	 73.67	+1	2130464..2131120	-	218	146278125	-	Rsph17025_2088	-	hypothetical protein
2068	 69.75	0	2131120..2133327	-	735	146278126	-	Rsph17025_2089	-	hypothetical protein
2069	 72.22	+1	2133324..2133611	-	95	146278127	-	Rsph17025_2090	-	hypothetical protein
2070	 70.30	0	2133677..2134006	-	109	146278128	-	Rsph17025_2091	-	hypothetical protein
2071	 70.42	0	2134026..2134958	-	310	146278129	-	Rsph17025_2092	-	hypothetical protein
2072	 73.84	+1	2135100..2135531	-	143	146278130	-	Rsph17025_2093	-	hypothetical protein
2073	 71.33	0	2135531..2135959	-	142	146278131	-	Rsph17025_2094	-	hypothetical protein
2074	 76.52	+2	2136063..2136458	-	131	146278132	-	Rsph17025_2095	-	hypothetical protein
2075	 65.55	0	2136468..2137364	-	298	146278133	-	Rsph17025_2096	-	Mu-like prophage major head subunit gpT-like protein
2076	 73.15	+1	2137376..2137822	-	148	146278134	-	Rsph17025_2097	-	hypothetical protein
2077	 70.21	0	2137822..2138865	-	347	146278135	-	Rsph17025_2098	-	Mu-like prophage I protein-like protein
2078	 71.08	0	2138979..2139476	-	165	146278136	-	Rsph17025_2099	-	phage virion morphogenesis protein
2079	 73.15	+1	2139473..2140690	-	405	146278137	-	Rsph17025_2100	-	phage putative head morphogenesis protein, SPP1 gp7
2080	 70.04	0	2140683..2142314	-	543	146278138	-	Rsph17025_2101	-	hypothetical protein
2081	 73.33	+1	2142316..2142660	-	114	146278139	-	Rsph17025_2102	-	hypothetical protein
2082	 69.60	0	2142660..2144090	-	476	146278140	-	Rsph17025_2103	-	hypothetical protein
2083	 65.02	0	2144087..2144752	-	221	146278141	-	Rsph17025_2104	-	hypothetical protein
2084	 65.93	0	2144752..2145291	-	179	146278142	-	Rsph17025_2105	-	hypothetical protein
2085	 70.59	0	2145293..2145598	-	101	146278143	-	Rsph17025_2106	-	hypothetical protein
2086	 66.95	0	2145595..2145945	-	116	146278144	-	Rsph17025_2107	-	hypothetical protein
2087	 70.83	0	2145942..2146373	-	143	146278145	-	Rsph17025_2108	-	hypothetical protein
2088	 68.38	0	2146386..2147258	-	290	146278146	-	Rsph17025_2109	-	N-acetylmuramoyl-L-alanine amidase
2089	 58.45	-2	2147447..2148493	+	348	146278147	-	Rsph17025_2110	-	hypothetical protein
2090	 72.04	+1	2148517..2148888	-	123	146278148	-	Rsph17025_2111	-	hypothetical protein
2091	 68.98	0	2148885..2149490	-	201	146278149	-	Rsph17025_2112	-	MT-A70 family protein
2092	 68.27	0	2149487..2149798	-	103	146278150	-	Rsph17025_2113	-	hypothetical protein
2093	 68.49	0	2149795..2150232	-	145	146278151	-	Rsph17025_2114	-	hypothetical protein
2094	 62.96	-1	2150292..2150696	+	134	146278152	-	Rsph17025_2115	-	hypothetical protein
2095	 66.37	0	2150671..2151333	-	220	146278153	-	Rsph17025_2116	-	hypothetical protein
2096	 69.05	0	2151514..2151975	-	153	146278154	-	Rsph17025_2117	-	chromosomal replication initiator DnaA domain-containing protein
2097	 70.34	0	2151972..2152352	-	126	146278155	-	Rsph17025_2118	-	hypothetical protein
2098	 71.13	0	2152349..2152930	-	193	146278156	-	Rsph17025_2119	-	hypothetical protein
2099	 69.48	0	2152933..2153715	-	260	146278157	-	Rsph17025_2120	-	hypothetical protein
2100	 70.16	0	2153760..2155877	-	705	146278158	-	Rsph17025_2121	-	integrase catalytic subunit
2101	 68.17	0	2155874..2156740	-	288	146278159	-	Rsph17025_2122	-	nuclease
2102	 72.98	+1	2156742..2157026	-	94	146278160	-	Rsph17025_2123	-	hypothetical protein
2103	 68.48	0	2157026..2157301	-	91	146278161	-	Rsph17025_2124	-	hypothetical protein
2104	 64.15	-1	2157298..2157654	-	118	146278162	-	Rsph17025_2125	-	hypothetical protein
2105	 69.96	0	2157986..2158258	-	90	146278163	-	Rsph17025_2126	-	histone family protein DNA-binding protein
2106	 68.33	0	2158270..2158569	-	99	146278164	-	Rsph17025_2127	-	hypothetical protein
2107	 62.07	-1	2158656..2159351	+	231	146278165	-	Rsph17025_2128	-	putative phage repressor
2108	 66.19	0	2160686..2161105	+	139	146278166	-	Rsph17025_2129	-	HNH endonuclease
2109	 62.47	-1	2161300..2161704	-	134	146278167	-	Rsph17025_2130	-	integrase catalytic subunit
2110	 65.48	0	2163560..2164483	+	307	146278168	-	Rsph17025_2132	-	IstB ATP binding domain-containing protein
2111	 63.08	-1	2164504..2164893	+	129	146278169	-	Rsph17025_2133	-	transposase, IS4 family protein
2112	 63.14	-1	2164890..2165201	+	103	146278170	-	Rsph17025_2134	-	IstB ATP binding domain-containing protein
2113	 66.67	0	2165374..2165568	-	64	146278171	-	Rsph17025_2135	-	DNA replication protein-like protein
2114	 65.08	0	2165664..2165852	-	62	146278172	-	Rsph17025_2136	-	prevent-host-death family protein
2115	 71.26	0	2166588..2167196	-	202	146278173	-	Rsph17025_2137	-	lysine exporter protein LysE/YggA
2116	 66.44	0	2167193..2167636	-	147	146278174	-	Rsph17025_2138	-	AsnC family transcriptional regulator
2117	 67.51	0	2167775..2168368	-	197	146278175	-	Rsph17025_2139	-	hypothetical protein
2118	 69.81	0	2168584..2170395	-	603	146278176	-	Rsph17025_2140	-	ABC transporter related
2119	 73.28	+1	2170453..2171616	-	387	146278177	-	Rsph17025_2141	-	lipid-A-disaccharide synthase
2120	 75.55	+2	2171613..2172434	-	273	146278178	-	Rsph17025_2142	-	hypothetical protein
2121	 70.50	0	2172431..2173213	-	260	146278179	-	Rsph17025_2143	-	UDP-N-acetylglucosamine acyltransferase
2122	 65.17	0	2173217..2173684	-	155	146278180	-	Rsph17025_2144	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
2123	 75.31	+2	2173770..2174417	-	215	146278181	-	Rsph17025_2145	-	outer membrane chaperone Skp (OmpH)
2124	 65.20	0	2174417..2176795	-	792	146278182	-	Rsph17025_2146	-	surface antigen (D15)
2125	 68.72	0	2176907..2177101	-	64	146278183	-	Rsph17025_2147	-	hypothetical protein
2126	 68.76	0	2177213..2178547	-	444	146278184	-	Rsph17025_2148	-	putative membrane-associated zinc metalloprotease
2127	 68.61	0	2178554..2179738	-	394	146278185	-	Rsph17025_2149	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2128	 69.10	0	2179747..2180568	-	273	146278186	-	Rsph17025_2150	-	phosphatidate cytidylyltransferase
2129	 69.51	0	2180565..2181302	-	245	146278187	-	Rsph17025_2151	-	undecaprenyl diphosphate synthase
2130	 65.43	0	2181375..2181941	-	188	146278188	-	Rsph17025_2152	-	ribosome recycling factor
2131	 67.07	0	2182028..2182768	-	246	146278189	-	Rsph17025_2153	-	uridylate kinase
2132	 72.37	+1	2182917..2183792	+	291	146278190	-	Rsph17025_2154	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2133	 71.59	0	2183868..2184659	+	263	146278191	-	Rsph17025_2155	-	helix-turn-helix domain-containing protein
2134	 68.75	0	2184746..2186377	+	543	146278192	-	Rsph17025_2156	-	extracellular solute-binding protein
2135	 69.71	0	2186421..2187407	+	328	146278193	-	Rsph17025_2157	-	binding-protein-dependent transport systems inner membrane component
2136	 69.70	0	2187407..2188561	+	384	146278194	-	Rsph17025_2158	-	binding-protein-dependent transport systems inner membrane component
2137	 74.21	+1	2188554..2190608	+	684	146278195	-	Rsph17025_2159	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
2138	 68.58	0	2190580..2192043	-	487	146278196	engA	Rsph17025_2160	-	GTP-binding protein EngA
2139	 72.67	+1	2192102..2193466	-	454	146278197	-	Rsph17025_2161	-	Pyrrolo-quinoline quinone
2140	 73.92	+1	2193495..2194142	-	215	146278198	-	Rsph17025_2162	-	hypothetical protein
2141	 67.23	0	2194376..2195263	+	295	146278199	-	Rsph17025_2163	-	hypothetical protein
2142	 63.71	-1	2195315..2196463	+	382	146278200	-	Rsph17025_2164	-	membrane protein involved in aromatic hydrocarbon degradation
2143	 65.86	0	2196636..2197505	+	289	146278201	-	Rsph17025_2165	-	hypothetical protein
2144	 63.07	-1	2197533..2198450	+	305	146278202	-	Rsph17025_2166	-	homoserine O-succinyltransferase
2145	 70.65	0	2198440..2199393	+	317	146278203	-	Rsph17025_2167	-	alpha/beta hydrolase fold
2146	 66.89	0	2199435..2200319	+	294	146278204	-	Rsph17025_2168	-	hypothetical protein
2147	 69.58	0	2200316..2200933	+	205	146278205	-	Rsph17025_2169	-	TetR family transcriptional regulator
2148	 68.03	0	2201053..2202150	-	365	146278206	-	Rsph17025_2170	-	spermidine/putrescine ABC transporter ATPase subunit
2149	 64.44	-1	2202147..2202953	-	268	146278207	-	Rsph17025_2171	-	binding-protein-dependent transport systems inner membrane component
2150	 63.29	-1	2202950..2203837	-	295	146278208	-	Rsph17025_2172	-	binding-protein-dependent transport systems inner membrane component
2151	 72.29	+1	2203916..2205319	-	467	146278209	-	Rsph17025_2173	-	GntR family transcriptional regulator
2152	 73.33	+1	2205404..2205628	+	74	146278210	-	Rsph17025_2174	-	hypothetical protein
2153	 67.70	0	2205754..2206236	-	160	146278211	rpsI	Rsph17025_2175	-	30S ribosomal protein S9
2154	 63.87	-1	2206240..2206704	-	154	146278212	rplM	Rsph17025_2176	-	50S ribosomal protein L13
2155	 72.62	+1	2206916..2207704	-	262	146278213	-	Rsph17025_2177	-	hypothetical protein
2156	 65.54	0	2208273..2208806	+	177	146278214	-	Rsph17025_2178	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2157	 68.00	0	2208846..2210195	-	449	146278215	-	Rsph17025_2179	-	SAF domain-containing protein
2158	 66.29	0	2210192..2211247	-	351	146278216	-	Rsph17025_2180	-	NAD-dependent epimerase/dehydratase
2159	 74.49	+1	2211437..2212228	-	263	146278217	-	Rsph17025_2181	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.