IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1988	 74.39	+1	2050206..2051060	-	284	146278046	-	Rsph17025_2009	-	hydroxymethylglutaryl-CoA lyase
1989	 72.64	+1	2051053..2052993	-	646	146278047	-	Rsph17025_2010	-	carbamoyl-phosphate synthase L chain, ATP-binding
1990	 70.16	0	2053092..2054696	-	534	146278048	-	Rsph17025_2011	-	propionyl-CoA carboxylase
1991	 65.67	0	2054840..2055442	+	200	146278049	-	Rsph17025_2012	-	OmpW family protein
1992	 67.10	0	2055533..2056690	-	385	146278050	-	Rsph17025_2013	-	acyl-CoA dehydrogenase domain-containing protein
1993	 65.79	0	2056821..2057276	+	151	146278051	-	Rsph17025_2014	-	CreA family protein
1994	 71.29	0	2057293..2058006	-	237	146278052	-	Rsph17025_2015	-	HAD family hydrolase
1995	 69.30	0	2058107..2059471	+	454	146278053	-	Rsph17025_2016	-	nucleotidyl transferase
1996	 69.21	0	2059471..2061282	+	603	146278054	-	Rsph17025_2017	-	D-fructose-6-phosphate amidotransferase
1997	 71.74	0	2061350..2062552	-	400	146278055	-	Rsph17025_2018	-	Serine--glyoxylate transaminase
1998	 69.88	0	2062742..2064514	+	590	146278056	-	Rsph17025_2019	-	ABC transporter related
1999	 69.40	0	2064504..2065271	+	255	146278057	-	Rsph17025_2020	-	glycine cleavage T protein (aminomethyl transferase)
2000	 62.77	-1	2065295..2065858	-	187	146278058	-	Rsph17025_2021	-	elongation factor P
2001	 64.53	-1	2066066..2066392	+	108	146278059	-	Rsph17025_2022	-	hypothetical protein
2002	 70.02	0	2066483..2066989	-	168	146278060	-	Rsph17025_2023	-	hypothetical protein
2003	 68.53	0	2067150..2068547	-	465	146278061	-	Rsph17025_2024	-	TolC family type I secretion outer membrane protein
2004	 65.90	0	2068593..2069246	-	217	146278062	-	Rsph17025_2025	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
2005	 74.04	+1	2069416..2070798	+	460	146278063	-	Rsph17025_2026	-	FAD dependent oxidoreductase
2006	 69.49	0	2070821..2072767	-	648	146278064	-	Rsph17025_2027	-	1-deoxy-D-xylulose-5-phosphate synthase
2007	 62.65	-1	2072939..2073187	-	82	146278065	-	Rsph17025_2028	-	hypothetical protein
2008	 65.26	0	2073200..2074126	-	308	146278066	-	Rsph17025_2029	-	photosynthetic reaction center subunit M
2009	 62.54	-1	2074119..2074967	-	282	146278067	-	Rsph17025_2030	-	photosynthetic reaction center subunit L
2010	 57.63	-2	2075091..2075267	-	58	146278068	-	Rsph17025_2031	-	antenna complex, alpha/beta subunit
2011	 57.38	-2	2075281..2075463	-	60	146278069	-	Rsph17025_2032	-	antenna complex, alpha/beta subunit
2012	 67.09	0	2075560..2075793	-	77	146278070	-	Rsph17025_2033	-	PufQ cytochrome subunit
2013	 65.58	0	2075790..2077265	-	491	146278071	-	Rsph17025_2034	-	chlorophyllide reductase subunit Z
2014	 70.46	0	2077265..2078767	-	500	146278072	-	Rsph17025_2035	-	chlorophyllide reductase subunit Y
2015	 64.07	-1	2078843..2079844	-	333	146278073	-	Rsph17025_2036	-	chlorophyllide reductase iron protein subunit X
2016	 68.34	0	2079841..2080797	-	318	146278074	-	Rsph17025_2037	-	chlorophyll synthesis pathway, BchC
2017	 71.05	0	2080952..2082091	-	379	146278075	-	Rsph17025_2038	-	O-methyltransferase family protein
2018	 70.24	0	2082141..2083007	-	288	146278076	-	Rsph17025_2039	-	polyprenyl synthetase
2019	 71.03	0	2083154..2084641	+	495	146278077	-	Rsph17025_2040	-	phytoene dehydrogenase-related protein
2020	 71.63	0	2084707..2085552	+	281	146278078	-	Rsph17025_2041	-	hydroxyneurosporene synthase
2021	 69.26	0	2085614..2086537	-	307	146278079	-	Rsph17025_2042	-	dihydrodipicolinate synthetase
2022	 68.09	0	2086651..2087421	-	256	146278080	-	Rsph17025_2043	-	hypothetical protein
2023	 66.67	0	2087597..2088580	+	327	146278081	-	Rsph17025_2044	-	TRAP dicarboxylate transporter- DctP subunit
2024	 69.48	0	2088667..2089200	+	177	146278082	-	Rsph17025_2045	-	tripartite ATP-independent periplasmic transporter DctQ
2025	 67.20	0	2089210..2090511	+	433	146278083	-	Rsph17025_2046	-	TRAP dicarboxylate transporter, DctM subunit
2026	 71.56	0	2090567..2091301	+	244	146278084	-	Rsph17025_2047	-	allophanate hydrolase subunit 1
2027	 75.09	+1	2091298..2092365	+	355	146278085	-	Rsph17025_2048	-	urea amidolyase related protein
2028	 69.77	0	2092362..2093006	+	214	146278086	-	Rsph17025_2049	-	GntR family transcriptional regulator
2029	 74.37	+1	2093021..2094007	+	328	146278087	-	Rsph17025_2050	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2030	 73.40	+1	2094004..2095281	+	425	146278088	-	Rsph17025_2051	-	allantoate amidohydrolase
2031	 69.65	0	2095278..2095913	+	211	146278089	-	Rsph17025_2052	-	GntR family transcriptional regulator
2032	 73.76	+1	2095917..2097101	+	394	146278090	-	Rsph17025_2053	-	creatinase
2033	 72.24	+1	2097122..2098072	+	316	146278091	-	Rsph17025_2054	-	acetamidase/formamidase
2034	 71.02	0	2098076..2099017	-	313	146278092	-	Rsph17025_2055	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2035	 71.13	0	2099112..2099828	-	238	146278093	-	Rsph17025_2056	-	hypothetical protein
2036	 72.77	+1	2099845..2100630	-	261	146278094	-	Rsph17025_2057	-	short-chain dehydrogenase/reductase SDR
2037	 69.63	0	2100714..2101928	-	404	146278095	-	Rsph17025_2058	-	aminotransferase, class I and II
2038	 72.58	+1	2101974..2102396	-	140	146278096	-	Rsph17025_2059	-	endoribonuclease L-PSP
2039	 69.95	0	2102393..2103610	-	405	146278097	-	Rsph17025_2060	-	aspartate aminotransferase
2040	 70.69	0	2103729..2104598	+	289	146278098	-	Rsph17025_2061	-	LysR family transcriptional regulator
2041	 68.98	0	2104924..2105787	+	287	146278099	-	Rsph17025_2062	-	extracellular solute-binding protein
2042	 66.26	0	2105857..2106597	+	246	146278100	-	Rsph17025_2063	-	ABC transporter related
2043	 69.90	0	2106602..2107282	+	226	146278101	-	Rsph17025_2064	-	polar amino acid ABC transporter, inner membrane subunit
2044	 69.37	0	2107286..2107951	+	221	146278102	-	Rsph17025_2065	-	polar amino acid ABC transporter, inner membrane subunit
2045	 66.13	0	2107989..2108915	+	308	146278103	-	Rsph17025_2066	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2046	 70.16	0	2108928..2110385	+	485	146278104	-	Rsph17025_2067	-	dihydropyrimidinase
2047	 72.74	+1	2110382..2111023	+	213	146278105	-	Rsph17025_2068	-	Asp/Glu racemase
2048	 70.11	0	2111020..2111949	+	309	146278106	-	Rsph17025_2069	-	LysR family transcriptional regulator
2049	 71.26	0	2111946..2112554	+	202	146278107	-	Rsph17025_2070	-	hypothetical protein
2050	 64.75	-1	2112949..2114409	+	486	146278108	-	Rsph17025_2071	-	cysteinyl-tRNA synthetase
2051	 69.74	0	2114538..2116163	+	541	146278109	-	Rsph17025_2072	-	alpha-isopropylmalate/homocitrate synthase family transferase
2052	 72.50	+1	2116160..2116879	+	239	146278110	-	Rsph17025_2073	-	methyltransferase type 12
2053	 76.17	+2	2116876..2117643	+	255	146278111	-	Rsph17025_2074	-	phytoene/squalene synthetase-like protein
2054	 70.76	0	2117648..2118868	-	406	146278112	-	Rsph17025_2075	-	major facilitator transporter
2055	 73.33	+1	2118981..2119610	+	209	146278113	-	Rsph17025_2076	-	HhH-GPD family protein
2056	 71.34	0	2119607..2120269	+	220	146278114	-	Rsph17025_2077	-	phospholipase/carboxylesterase
2057	 60.22	-2	2120471..2120563	+	30	146278115	-	Rsph17025_2078	-	hypothetical protein
2058	 66.30	0	2120655..2121755	-	366	146278116	-	Rsph17025_2079	-	RNA-directed DNA polymerase (Reverse transcriptase)
2059	 61.25	-2	2122044..2122394	-	116	146278117	-	Rsph17025_2080	-	hypothetical protein
2060	 69.04	0	2122462..2123514	-	350	146278118	-	Rsph17025_2081	-	hypothetical protein
2061	 66.07	0	2123514..2123846	-	110	146278119	-	Rsph17025_2082	-	hypothetical protein
2062	 74.74	+1	2123855..2125093	-	412	146278120	-	Rsph17025_2083	-	hypothetical protein
2063	 65.82	0	2125144..2125737	-	197	146278121	-	Rsph17025_2084	-	hypothetical protein
2064	 68.33	0	2125737..2129402	-	1221	146278122	-	Rsph17025_2085	-	hypothetical protein
2065	 73.04	+1	2129399..2129806	-	135	146278123	-	Rsph17025_2086	-	hypothetical protein
2066	 73.36	+1	2129803..2130459	-	218	146278124	-	Rsph17025_2087	-	hypothetical protein
2067	 73.67	+1	2130464..2131120	-	218	146278125	-	Rsph17025_2088	-	hypothetical protein
2068	 69.75	0	2131120..2133327	-	735	146278126	-	Rsph17025_2089	-	hypothetical protein
2069	 72.22	+1	2133324..2133611	-	95	146278127	-	Rsph17025_2090	-	hypothetical protein
2070	 70.30	0	2133677..2134006	-	109	146278128	-	Rsph17025_2091	-	hypothetical protein
2071	 70.42	0	2134026..2134958	-	310	146278129	-	Rsph17025_2092	-	hypothetical protein
2072	 73.84	+1	2135100..2135531	-	143	146278130	-	Rsph17025_2093	-	hypothetical protein
2073	 71.33	0	2135531..2135959	-	142	146278131	-	Rsph17025_2094	-	hypothetical protein
2074	 76.52	+2	2136063..2136458	-	131	146278132	-	Rsph17025_2095	-	hypothetical protein
2075	 65.55	0	2136468..2137364	-	298	146278133	-	Rsph17025_2096	-	Mu-like prophage major head subunit gpT-like protein
2076	 73.15	+1	2137376..2137822	-	148	146278134	-	Rsph17025_2097	-	hypothetical protein
2077	 70.21	0	2137822..2138865	-	347	146278135	-	Rsph17025_2098	-	Mu-like prophage I protein-like protein
2078	 71.08	0	2138979..2139476	-	165	146278136	-	Rsph17025_2099	-	phage virion morphogenesis protein
2079	 73.15	+1	2139473..2140690	-	405	146278137	-	Rsph17025_2100	-	phage putative head morphogenesis protein, SPP1 gp7
2080	 70.04	0	2140683..2142314	-	543	146278138	-	Rsph17025_2101	-	hypothetical protein
2081	 73.33	+1	2142316..2142660	-	114	146278139	-	Rsph17025_2102	-	hypothetical protein
2082	 69.60	0	2142660..2144090	-	476	146278140	-	Rsph17025_2103	-	hypothetical protein
2083	 65.02	0	2144087..2144752	-	221	146278141	-	Rsph17025_2104	-	hypothetical protein
2084	 65.93	0	2144752..2145291	-	179	146278142	-	Rsph17025_2105	-	hypothetical protein
2085	 70.59	0	2145293..2145598	-	101	146278143	-	Rsph17025_2106	-	hypothetical protein
2086	 66.95	0	2145595..2145945	-	116	146278144	-	Rsph17025_2107	-	hypothetical protein
2087	 70.83	0	2145942..2146373	-	143	146278145	-	Rsph17025_2108	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.