IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.34   STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1949	 72.20	+1	2011178..2012134	+	318	146278007	-	Rsph17025_1970	-	glycosyl transferase family protein
1950	 70.41	0	2012144..2013400	-	418	146278008	-	Rsph17025_1971	-	glycosyl transferase family protein
1951	 66.54	0	2013603..2014385	+	260	146278009	-	Rsph17025_1972	-	glycoside hydrolase family protein
1952	 67.51	0	2014402..2015703	+	433	146278010	-	Rsph17025_1973	-	O-antigen polymerase
1953	 69.34	0	2015790..2017025	-	411	146278011	-	Rsph17025_1974	-	polysaccharide export protein
1954	 67.37	0	2017103..2017816	-	237	146278012	-	Rsph17025_1975	-	undecaprenyl-phosphate galactose phosphotransferase
1955	 61.24	-2	2018113..2018370	-	85	146278013	-	Rsph17025_1976	-	hypothetical protein
1956	 70.48	0	2018585..2019370	+	261	146278014	-	Rsph17025_1977	-	stationary-phase survival protein SurE
1957	 68.94	0	2019367..2020026	+	219	146278015	-	Rsph17025_1978	-	protein-L-isoaspartate O-methyltransferase
1958	 72.52	+1	2020154..2021383	+	409	146278016	-	Rsph17025_1979	-	peptidase M23B
1959	 68.10	0	2021481..2022317	-	278	146278017	-	Rsph17025_1980	-	hypothetical protein
1960	 63.89	-1	2022314..2023177	-	287	146278018	-	Rsph17025_1981	-	Sec-independent protein translocase, TatC subunit
1961	 70.32	0	2023174..2023611	-	145	146278019	-	Rsph17025_1982	-	twin-arginine translocation protein, TatB subunit
1962	 62.44	-1	2023622..2023834	-	70	146278020	-	Rsph17025_1983	-	twin arginine-targeting protein translocase
1963	 70.61	0	2024061..2025176	-	371	146278021	-	Rsph17025_1984	-	ABC transporter related
1964	 72.14	+1	2025265..2026050	-	261	146278022	-	Rsph17025_1985	-	short-chain dehydrogenase/reductase SDR
1965	 66.23	0	2026186..2027790	+	534	146278023	-	Rsph17025_1986	-	peptide chain release factor 3
1966	 68.83	0	2028043..2029566	+	507	146278024	-	Rsph17025_1987	-	DEAD/DEAH box helicase domain-containing protein
1967	 67.62	0	2029925..2031598	-	557	146278025	-	Rsph17025_1988	-	beta-lactamase domain-containing protein
1968	 65.25	0	2031595..2032368	-	257	146278026	-	Rsph17025_1989	-	pantothenate kinase
1969	 72.75	+1	2032379..2033134	-	251	146278027	-	Rsph17025_1990	-	biotin--acetyl-CoA-carboxylase ligase
1970	 65.48	0	2033124..2034560	-	478	146278028	-	Rsph17025_1991	-	NADH dehydrogenase subunit N
1971	 64.14	-1	2034571..2036112	-	513	146278029	-	Rsph17025_1992	-	NADH dehydrogenase subunit M
1972	 65.13	0	2036112..2038259	-	715	146278030	-	Rsph17025_1993	-	NADH dehydrogenase subunit L
1973	 60.46	-2	2038476..2038781	-	101	146278031	-	Rsph17025_1994	-	NADH dehydrogenase subunit K
1974	 65.53	0	2038943..2039557	-	204	146278032	-	Rsph17025_1995	-	NADH dehydrogenase subunit J
1975	 64.23	-1	2039554..2039964	-	136	146278033	-	Rsph17025_1996	-	carboxymuconolactone decarboxylase
1976	 64.48	-1	2039961..2040464	-	167	146278034	-	Rsph17025_1997	-	NADH dehydrogenase subunit I
1977	 63.58	-1	2040466..2041503	-	345	146278035	-	Rsph17025_1998	-	NADH dehydrogenase subunit H
1978	 66.91	0	2041531..2041941	-	136	146278036	-	Rsph17025_1999	-	hypothetical protein
1979	 69.79	0	2041945..2043960	-	671	146278037	-	Rsph17025_2000	-	NADH dehydrogenase subunit G
1980	 66.67	0	2044038..2045333	-	431	146278038	-	Rsph17025_2001	-	NADH dehydrogenase I subunit F
1981	 69.95	0	2045344..2045556	-	70	146278039	-	Rsph17025_2002	-	hypothetical protein
1982	 70.50	0	2045556..2046467	-	303	146278040	-	Rsph17025_2003	-	NADH dehydrogenase subunit E
1983	 65.01	0	2046467..2047675	-	402	146278041	-	Rsph17025_2004	-	NADH dehydrogenase subunit D
1984	 63.85	-1	2047686..2048288	-	200	146278042	-	Rsph17025_2005	-	NADH dehydrogenase subunit C
1985	 65.71	0	2048299..2048823	-	174	146278043	-	Rsph17025_2006	-	NADH dehydrogenase subunit B
1986	 62.14	-1	2048820..2049239	-	139	146278044	-	Rsph17025_2007	-	NADH dehydrogenase subunit A
1987	 73.00	+1	2049406..2050194	-	262	146278045	-	Rsph17025_2008	-	enoyl-CoA hydratase
1988	 74.39	+1	2050206..2051060	-	284	146278046	-	Rsph17025_2009	-	hydroxymethylglutaryl-CoA lyase
1989	 72.64	+1	2051053..2052993	-	646	146278047	-	Rsph17025_2010	-	carbamoyl-phosphate synthase L chain, ATP-binding
1990	 70.16	0	2053092..2054696	-	534	146278048	-	Rsph17025_2011	-	propionyl-CoA carboxylase
1991	 65.67	0	2054840..2055442	+	200	146278049	-	Rsph17025_2012	-	OmpW family protein
1992	 67.10	0	2055533..2056690	-	385	146278050	-	Rsph17025_2013	-	acyl-CoA dehydrogenase domain-containing protein
1993	 65.79	0	2056821..2057276	+	151	146278051	-	Rsph17025_2014	-	CreA family protein
1994	 71.29	0	2057293..2058006	-	237	146278052	-	Rsph17025_2015	-	HAD family hydrolase
1995	 69.30	0	2058107..2059471	+	454	146278053	-	Rsph17025_2016	-	nucleotidyl transferase
1996	 69.21	0	2059471..2061282	+	603	146278054	-	Rsph17025_2017	-	D-fructose-6-phosphate amidotransferase
1997	 71.74	0	2061350..2062552	-	400	146278055	-	Rsph17025_2018	-	Serine--glyoxylate transaminase
1998	 69.88	0	2062742..2064514	+	590	146278056	-	Rsph17025_2019	-	ABC transporter related
1999	 69.40	0	2064504..2065271	+	255	146278057	-	Rsph17025_2020	-	glycine cleavage T protein (aminomethyl transferase)
2000	 62.77	-1	2065295..2065858	-	187	146278058	-	Rsph17025_2021	-	elongation factor P
2001	 64.53	-1	2066066..2066392	+	108	146278059	-	Rsph17025_2022	-	hypothetical protein
2002	 70.02	0	2066483..2066989	-	168	146278060	-	Rsph17025_2023	-	hypothetical protein
2003	 68.53	0	2067150..2068547	-	465	146278061	-	Rsph17025_2024	-	TolC family type I secretion outer membrane protein
2004	 65.90	0	2068593..2069246	-	217	146278062	-	Rsph17025_2025	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
2005	 74.04	+1	2069416..2070798	+	460	146278063	-	Rsph17025_2026	-	FAD dependent oxidoreductase
2006	 69.49	0	2070821..2072767	-	648	146278064	-	Rsph17025_2027	-	1-deoxy-D-xylulose-5-phosphate synthase
2007	 62.65	-1	2072939..2073187	-	82	146278065	-	Rsph17025_2028	-	hypothetical protein
2008	 65.26	0	2073200..2074126	-	308	146278066	-	Rsph17025_2029	-	photosynthetic reaction center subunit M
2009	 62.54	-1	2074119..2074967	-	282	146278067	-	Rsph17025_2030	-	photosynthetic reaction center subunit L
2010	 57.63	-2	2075091..2075267	-	58	146278068	-	Rsph17025_2031	-	antenna complex, alpha/beta subunit
2011	 57.38	-2	2075281..2075463	-	60	146278069	-	Rsph17025_2032	-	antenna complex, alpha/beta subunit
2012	 67.09	0	2075560..2075793	-	77	146278070	-	Rsph17025_2033	-	PufQ cytochrome subunit
2013	 65.58	0	2075790..2077265	-	491	146278071	-	Rsph17025_2034	-	chlorophyllide reductase subunit Z
2014	 70.46	0	2077265..2078767	-	500	146278072	-	Rsph17025_2035	-	chlorophyllide reductase subunit Y
2015	 64.07	-1	2078843..2079844	-	333	146278073	-	Rsph17025_2036	-	chlorophyllide reductase iron protein subunit X
2016	 68.34	0	2079841..2080797	-	318	146278074	-	Rsph17025_2037	-	chlorophyll synthesis pathway, BchC
2017	 71.05	0	2080952..2082091	-	379	146278075	-	Rsph17025_2038	-	O-methyltransferase family protein
2018	 70.24	0	2082141..2083007	-	288	146278076	-	Rsph17025_2039	-	polyprenyl synthetase
2019	 71.03	0	2083154..2084641	+	495	146278077	-	Rsph17025_2040	-	phytoene dehydrogenase-related protein
2020	 71.63	0	2084707..2085552	+	281	146278078	-	Rsph17025_2041	-	hydroxyneurosporene synthase
2021	 69.26	0	2085614..2086537	-	307	146278079	-	Rsph17025_2042	-	dihydrodipicolinate synthetase
2022	 68.09	0	2086651..2087421	-	256	146278080	-	Rsph17025_2043	-	hypothetical protein
2023	 66.67	0	2087597..2088580	+	327	146278081	-	Rsph17025_2044	-	TRAP dicarboxylate transporter- DctP subunit
2024	 69.48	0	2088667..2089200	+	177	146278082	-	Rsph17025_2045	-	tripartite ATP-independent periplasmic transporter DctQ
2025	 67.20	0	2089210..2090511	+	433	146278083	-	Rsph17025_2046	-	TRAP dicarboxylate transporter, DctM subunit
2026	 71.56	0	2090567..2091301	+	244	146278084	-	Rsph17025_2047	-	allophanate hydrolase subunit 1
2027	 75.09	+1	2091298..2092365	+	355	146278085	-	Rsph17025_2048	-	urea amidolyase related protein
2028	 69.77	0	2092362..2093006	+	214	146278086	-	Rsph17025_2049	-	GntR family transcriptional regulator
2029	 74.37	+1	2093021..2094007	+	328	146278087	-	Rsph17025_2050	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2030	 73.40	+1	2094004..2095281	+	425	146278088	-	Rsph17025_2051	-	allantoate amidohydrolase
2031	 69.65	0	2095278..2095913	+	211	146278089	-	Rsph17025_2052	-	GntR family transcriptional regulator
2032	 73.76	+1	2095917..2097101	+	394	146278090	-	Rsph17025_2053	-	creatinase
2033	 72.24	+1	2097122..2098072	+	316	146278091	-	Rsph17025_2054	-	acetamidase/formamidase
2034	 71.02	0	2098076..2099017	-	313	146278092	-	Rsph17025_2055	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2035	 71.13	0	2099112..2099828	-	238	146278093	-	Rsph17025_2056	-	hypothetical protein
2036	 72.77	+1	2099845..2100630	-	261	146278094	-	Rsph17025_2057	-	short-chain dehydrogenase/reductase SDR
2037	 69.63	0	2100714..2101928	-	404	146278095	-	Rsph17025_2058	-	aminotransferase, class I and II
2038	 72.58	+1	2101974..2102396	-	140	146278096	-	Rsph17025_2059	-	endoribonuclease L-PSP
2039	 69.95	0	2102393..2103610	-	405	146278097	-	Rsph17025_2060	-	aspartate aminotransferase
2040	 70.69	0	2103729..2104598	+	289	146278098	-	Rsph17025_2061	-	LysR family transcriptional regulator
2041	 68.98	0	2104924..2105787	+	287	146278099	-	Rsph17025_2062	-	extracellular solute-binding protein
2042	 66.26	0	2105857..2106597	+	246	146278100	-	Rsph17025_2063	-	ABC transporter related
2043	 69.90	0	2106602..2107282	+	226	146278101	-	Rsph17025_2064	-	polar amino acid ABC transporter, inner membrane subunit
2044	 69.37	0	2107286..2107951	+	221	146278102	-	Rsph17025_2065	-	polar amino acid ABC transporter, inner membrane subunit
2045	 66.13	0	2107989..2108915	+	308	146278103	-	Rsph17025_2066	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2046	 70.16	0	2108928..2110385	+	485	146278104	-	Rsph17025_2067	-	dihydropyrimidinase
2047	 72.74	+1	2110382..2111023	+	213	146278105	-	Rsph17025_2068	-	Asp/Glu racemase
2048	 70.11	0	2111020..2111949	+	309	146278106	-	Rsph17025_2069	-	LysR family transcriptional regulator
68.34	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.