IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1853	 70.79	0	1923262..1926243	-	993	146277911	-	Rsph17025_1874	-	sarcosine oxidase alpha subunit family protein
1854	 64.20	-1	1926240..1926563	-	107	146277912	-	Rsph17025_1875	-	sarcosine oxidase, delta subunit, heterotetrameric
1855	 62.40	-1	1926603..1926977	-	124	146277913	-	Rsph17025_1876	-	hypothetical protein
1856	 66.75	0	1927057..1928304	-	415	146277914	-	Rsph17025_1877	-	sarcosine oxidase beta subunit family protein
1857	 74.38	+1	1928457..1929752	+	431	146277915	-	Rsph17025_1878	-	cytochrome c biogenesis factor-like protein
1858	 68.94	0	1929749..1930231	+	160	146277916	-	Rsph17025_1879	-	Holliday junction resolvase YqgF
1859	 64.30	-1	1930550..1931140	+	196	146277917	-	Rsph17025_1880	-	NnrU family protein
1860	 71.38	0	1931134..1931685	-	183	146277918	-	Rsph17025_1881	-	2'-5' RNA ligase
1861	 72.38	+1	1931682..1932854	-	390	146277919	-	Rsph17025_1882	-	histone deacetylase superfamily protein
1862	 65.36	0	1932868..1933326	-	152	146277920	-	Rsph17025_1883	-	glutathione peroxidase
1863	 69.28	0	1933668..1934165	+	165	146277921	-	Rsph17025_1884	-	NUDIX hydrolase
1864	 66.67	0	1934236..1934673	+	145	146277922	-	Rsph17025_1885	-	hypothetical protein
1865	 69.05	0	1934767..1935855	+	362	146277923	mtnA	Rsph17025_1886	-	methylthioribose-1-phosphate isomerase
1866	 62.94	-1	1935861..1936289	-	142	146277924	-	Rsph17025_1887	-	phosphate-starvation-inducible E
1867	 68.79	0	1936504..1936833	-	109	146277925	-	Rsph17025_1888	-	hypothetical protein
1868	 65.46	0	1936966..1937463	-	165	146277926	-	Rsph17025_1889	-	hypothetical protein
1869	 73.91	+1	1937654..1938619	+	321	146277927	-	Rsph17025_1890	-	hypothetical protein
1870	 70.65	0	1938606..1939007	+	133	146277928	-	Rsph17025_1891	-	hypothetical protein
1871	 71.02	0	1939007..1940086	+	359	146277929	-	Rsph17025_1892	-	hypothetical protein
1872	 69.14	0	1940183..1940344	-	53	146277930	-	Rsph17025_1893	-	hypothetical protein
1873	 72.25	+1	1940417..1940971	-	184	146277931	-	Rsph17025_1894	-	3-methyladenine DNA glycosylase
1874	 67.05	0	1941091..1941615	+	174	146277932	-	Rsph17025_1895	-	hypothetical protein
1875	 67.09	0	1941785..1943917	+	710	146277933	-	Rsph17025_1896	-	catalase
1876	 66.67	0	1943950..1944204	+	84	146277934	-	Rsph17025_1897	-	hypothetical protein
1877	 69.61	0	1944349..1945671	+	440	146277935	-	Rsph17025_1898	-	cytochrome P450-like protein
1878	 67.45	0	1945866..1946891	-	341	146277936	tdh	Rsph17025_1899	-	L-threonine 3-dehydrogenase
1879	 69.77	0	1946891..1948081	-	396	146277937	-	Rsph17025_1900	-	2-amino-3-ketobutyrate coenzyme A ligase
1880	 71.16	0	1948128..1949573	-	481	146277938	-	Rsph17025_1901	-	hypothetical protein
1881	 69.33	0	1949704..1950228	-	174	146277939	-	Rsph17025_1902	-	hypothetical protein
1882	 58.40	-2	1950397..1951110	-	237	146277940	-	Rsph17025_1903	-	two component transcriptional regulator
1883	 65.23	0	1951206..1951484	-	92	146277941	-	Rsph17025_1904	-	hypothetical protein
1884	 69.48	0	1951606..1952742	+	378	146277942	-	Rsph17025_1905	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1885	 69.99	0	1952749..1953501	-	250	146277943	-	Rsph17025_1906	-	putative hemolysin-like protein
1886	 67.41	0	1953609..1954013	+	134	146277944	-	Rsph17025_1907	-	methionine-R-sulfoxide reductase
1887	 69.57	0	1954151..1954633	-	160	146277945	-	Rsph17025_1908	-	SmpA/OmlA domain-containing protein
1888	 72.90	+1	1954854..1955447	+	197	146277946	-	Rsph17025_1909	-	hypothetical protein
1889	 67.15	0	1955622..1955828	+	68	146277947	rpmF	Rsph17025_1910	-	50S ribosomal protein L32
1890	 69.59	0	1955897..1956958	+	353	146277948	-	Rsph17025_1911	-	putative glycerol-3-phosphate acyltransferase PlsX
1891	 68.93	0	1956975..1957946	+	323	146277949	-	Rsph17025_1912	-	3-oxoacyl-(acyl-carrier-protein) synthase III
1892	 65.35	0	1958036..1958338	+	100	146277950	-	Rsph17025_1913	-	integration host factor, alpha subunit
1893	 73.14	+1	1958345..1959193	+	282	146277951	-	Rsph17025_1914	-	MerR family transcriptional regulator
1894	 69.92	0	1959413..1960489	+	358	146277952	-	Rsph17025_1915	-	2'-deoxycytidine 5'-triphosphate deaminase
1895	 71.46	0	1960679..1961179	+	166	146277953	-	Rsph17025_1916	-	flavin reductase domain-containing protein
1896	 68.08	0	1961246..1961599	+	117	146277954	-	Rsph17025_1917	-	regulatory protein, ArsR
1897	 71.45	0	1961610..1962299	+	229	146277955	-	Rsph17025_1918	-	hypothetical protein
1898	 66.28	0	1962478..1963521	+	347	146277956	-	Rsph17025_1919	-	ABC-type phosphate transport system periplasmic component-like protein
1899	 69.44	0	1963579..1965021	+	480	146277957	-	Rsph17025_1920	-	phosphate ABC transporter, inner membrane subunit PstC
1900	 69.26	0	1965018..1966367	+	449	146277958	-	Rsph17025_1921	-	phosphate ABC transporter, inner membrane subunit PstA
1901	 67.04	0	1966379..1967176	+	265	146277959	-	Rsph17025_1922	-	phosphate ABC transporter, ATPase subunit
1902	 66.94	0	1967190..1967918	+	242	146277960	-	Rsph17025_1923	-	phosphate uptake regulator, PhoU
1903	 68.98	0	1967918..1968610	+	230	146277961	-	Rsph17025_1924	-	two component transcriptional regulator
1904	 69.54	0	1968696..1969496	+	266	146277962	-	Rsph17025_1925	-	binding-protein-dependent transport systems inner membrane component
1905	 69.30	0	1969515..1970501	+	328	146277963	-	Rsph17025_1926	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
1906	 71.99	+1	1970498..1971286	+	262	146277964	-	Rsph17025_1927	-	ABC transporter related
1907	 69.00	0	1971306..1971776	-	156	146277965	-	Rsph17025_1928	-	hypothetical protein
1908	 70.96	0	1971773..1972378	-	201	146277966	-	Rsph17025_1929	-	hypothetical protein
1909	 72.19	+1	1972389..1973819	-	476	146277967	-	Rsph17025_1930	-	histidine kinase
1910	 71.33	0	1973809..1974966	-	385	146277968	-	Rsph17025_1931	-	hypothetical protein
1911	 67.09	0	1974977..1975687	-	236	146277969	-	Rsph17025_1932	-	two component LuxR family transcriptional regulator
1912	 68.53	0	1975844..1976650	-	268	146277970	-	Rsph17025_1933	-	secreted protein-like protein
1913	 72.03	+1	1976756..1977799	+	347	146277971	-	Rsph17025_1934	-	beta-lactamase domain-containing protein
1914	 68.52	0	1977815..1978408	-	197	146277972	-	Rsph17025_1935	-	hypothetical protein
1915	 66.78	0	1978419..1979279	-	286	146277973	-	Rsph17025_1936	-	ABC-2 type transporter
1916	 73.53	+1	1979276..1980004	-	242	146277974	-	Rsph17025_1937	-	ABC transporter related
1917	 62.96	-1	1980001..1980243	-	80	146277975	-	Rsph17025_1938	-	hypothetical protein
1918	 66.67	0	1980259..1980702	-	147	146277976	-	Rsph17025_1939	-	hypothetical protein
1919	 66.04	0	1980727..1981689	-	320	146277977	-	Rsph17025_1940	-	YVTN beta-propeller repeat-containing protein
1920	 69.71	0	1981714..1982895	-	393	146277978	-	Rsph17025_1941	-	hypothetical protein
1921	 69.70	0	1982924..1983451	-	175	146277979	-	Rsph17025_1942	-	hypothetical protein
1922	 68.51	0	1983448..1984260	-	270	146277980	-	Rsph17025_1943	-	extracellular solute-binding protein
1923	 65.73	0	1984257..1984787	-	176	146277981	-	Rsph17025_1944	-	hypothetical protein
1924	 64.95	0	1984938..1986740	-	600	146277982	-	Rsph17025_1945	-	Pyrrolo-quinoline quinone
1925	 69.44	0	1986952..1987383	-	143	146277983	-	Rsph17025_1946	-	cytochrome c, class I
1926	 65.69	0	1987510..1988640	-	376	146277984	-	Rsph17025_1947	-	alcohol dehydrogenase
1927	 67.01	0	1988840..1989421	-	193	146277985	-	Rsph17025_1948	-	glutathione-dependent formaldehyde-activating enzyme
1928	 65.25	0	1989646..1990140	+	164	146277986	-	Rsph17025_1949	-	hypothetical protein
1929	 71.54	0	1990186..1990944	-	252	146277987	-	Rsph17025_1950	-	hypothetical protein
1930	 67.17	0	1991101..1991892	-	263	146277988	-	Rsph17025_1951	-	CRP/FNR family transcriptional regulator
1931	 70.06	0	1992017..1993048	-	343	146277989	-	Rsph17025_1952	-	luciferase family protein
1932	 71.23	0	1993233..1993802	+	189	146277990	-	Rsph17025_1953	-	PfpI family intracellular peptidase
1933	 66.01	0	1993937..1995151	+	404	146277991	-	Rsph17025_1954	-	NAD-dependent epimerase/dehydratase
1934	 68.34	0	1995152..1995988	+	278	146277992	-	Rsph17025_1955	-	glycosyl transferase family protein
1935	 73.90	+1	1995973..1996788	+	271	146277993	-	Rsph17025_1956	-	NAD-dependent epimerase/dehydratase
1936	 68.60	0	1997112..1998041	+	309	146277994	-	Rsph17025_1957	-	putative UTP-glucose-1-phosphate uridylyltransferase GalU
1937	 70.60	0	1998065..1999234	+	389	146277995	-	Rsph17025_1958	-	hypothetical protein
1938	 70.10	0	1999231..2000220	+	329	146277996	-	Rsph17025_1959	-	glycosyl transferase family protein
1939	 71.25	0	2000217..2001197	+	326	146277997	-	Rsph17025_1960	-	glycosyl transferase family protein
1940	 67.89	0	2001194..2003563	+	789	146277998	-	Rsph17025_1961	-	non-specific protein-tyrosine kinase
1941	 68.22	0	2003735..2003992	+	85	146277999	-	Rsph17025_1962	-	hypothetical protein
1942	 68.72	0	2004080..2005930	-	616	146278000	-	Rsph17025_1963	-	ABC transporter related
1943	 73.05	+1	2005927..2006850	-	307	146278001	-	Rsph17025_1964	-	HPr kinase
1944	 72.43	+1	2006847..2008721	-	624	146278002	-	Rsph17025_1965	-	asparagine synthase
1945	 73.63	+1	2008718..2009191	-	157	146278003	-	Rsph17025_1966	-	hypothetical protein
1946	 64.75	-1	2009202..2009462	-	86	146278004	-	Rsph17025_1967	-	hypothetical protein
1947	 56.36	-2	2009548..2009877	-	109	146278005	-	Rsph17025_1968	-	hypothetical protein
1948	 72.74	+1	2010045..2011181	+	378	146278006	-	Rsph17025_1969	-	hypothetical protein
1949	 72.20	+1	2011178..2012134	+	318	146278007	-	Rsph17025_1970	-	glycosyl transferase family protein
1950	 70.41	0	2012144..2013400	-	418	146278008	-	Rsph17025_1971	-	glycosyl transferase family protein
1951	 66.54	0	2013603..2014385	+	260	146278009	-	Rsph17025_1972	-	glycoside hydrolase family protein
1952	 67.51	0	2014402..2015703	+	433	146278010	-	Rsph17025_1973	-	O-antigen polymerase
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.