IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1819	 74.86	+1	1880028..1880393	-	121	146277877	-	Rsph17025_1840	-	hypothetical protein
1820	 72.06	+1	1880412..1880912	-	166	146277878	-	Rsph17025_1841	-	hypothetical protein
1821	 71.34	0	1881073..1881714	-	213	146277879	-	Rsph17025_1842	-	hypothetical protein
1822	 65.08	0	1881891..1882457	-	188	146277880	-	Rsph17025_1843	-	hypothetical protein
1823	 70.26	0	1882711..1883433	+	240	146277881	-	Rsph17025_1844	-	CRP/FNR family transcriptional regulator
1824	 66.46	0	1883873..1886731	-	952	146277882	uvrA	Rsph17025_1845	-	excinuclease ABC subunit A
1825	 71.12	0	1886841..1888007	-	388	146277883	-	Rsph17025_1846	-	major facilitator transporter
1826	 66.67	0	1888099..1889493	-	464	146277884	-	Rsph17025_1847	-	dihydrolipoamide dehydrogenase
1827	 69.97	0	1889595..1890170	-	191	146277885	-	Rsph17025_1848	-	hypothetical protein
1828	 66.98	0	1890321..1891577	-	418	146277886	-	Rsph17025_1849	-	major facilitator transporter
1829	 70.51	0	1891657..1892697	-	346	146277887	-	Rsph17025_1850	-	queuosine biosynthesis protein
1830	 72.68	+1	1892789..1896082	-	1097	146277888	-	Rsph17025_1851	-	hypothetical protein
1831	 67.75	0	1896173..1896634	+	153	146277889	-	Rsph17025_1852	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1832	 67.41	0	1896929..1898269	+	446	146277890	-	Rsph17025_1853	-	peptidase M23B
1833	 67.82	0	1898259..1898777	+	172	146277891	-	Rsph17025_1854	-	hypothetical protein
1834	 63.32	-1	1898909..1899685	-	258	146277892	-	Rsph17025_1855	-	integral membrane protein-like protein
1835	 66.93	0	1899819..1900946	-	375	146277893	-	Rsph17025_1856	-	peptide chain release factor 2
1836	 66.98	0	1901038..1903587	-	849	146277894	-	Rsph17025_1857	-	1A family penicillin-binding protein
1837	 73.51	+1	1903678..1904904	-	408	146277895	-	Rsph17025_1858	-	N-acetylmuramoyl-L-alanine amidase
1838	 70.23	0	1904954..1906105	-	383	146277896	-	Rsph17025_1859	-	aminotransferase, class I and II
1839	 67.20	0	1906272..1907015	+	247	146277897	-	Rsph17025_1860	-	DSBA oxidoreductase
1840	 67.37	0	1907097..1908230	-	377	146277898	ispG	Rsph17025_1861	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1841	 68.58	0	1908360..1909559	-	399	146277899	-	Rsph17025_1862	-	hypothetical protein
1842	 64.38	-1	1909672..1910895	-	407	146277900	-	Rsph17025_1863	-	5-aminolevulinate synthase
1843	 72.98	+1	1911029..1911598	-	189	146277901	-	Rsph17025_1864	-	hypothetical protein
1844	 69.21	0	1911831..1913204	+	457	146277902	-	Rsph17025_1865	-	hypothetical protein
1845	 68.69	0	1913201..1913644	+	147	146277903	-	Rsph17025_1866	-	GCN5-related N-acetyltransferase
1846	 67.12	0	1914208..1915764	+	518	146277904	guaA	Rsph17025_1867	-	bifunctional GMP synthase/glutamine amidotransferase protein
1847	 66.99	0	1915830..1917662	-	610	146277905	-	Rsph17025_1868	-	ABC transporter related
1848	 73.01	+1	1917797..1918900	-	367	146277906	-	Rsph17025_1869	-	peptidoglycan-binding LysM
1849	 67.57	0	1919235..1919789	+	184	146277907	-	Rsph17025_1870	-	hypothetical protein
1850	 63.33	-1	1919870..1920469	-	199	146277908	-	Rsph17025_1871	-	superoxide dismutase
1851	 67.14	0	1920740..1922629	+	629	146277909	-	Rsph17025_1872	-	acyltransferase 3
1852	 70.97	0	1922712..1923269	-	185	146277910	-	Rsph17025_1873	-	sarcosine oxidase, gamma subunit
1853	 70.79	0	1923262..1926243	-	993	146277911	-	Rsph17025_1874	-	sarcosine oxidase alpha subunit family protein
1854	 64.20	-1	1926240..1926563	-	107	146277912	-	Rsph17025_1875	-	sarcosine oxidase, delta subunit, heterotetrameric
1855	 62.40	-1	1926603..1926977	-	124	146277913	-	Rsph17025_1876	-	hypothetical protein
1856	 66.75	0	1927057..1928304	-	415	146277914	-	Rsph17025_1877	-	sarcosine oxidase beta subunit family protein
1857	 74.38	+1	1928457..1929752	+	431	146277915	-	Rsph17025_1878	-	cytochrome c biogenesis factor-like protein
1858	 68.94	0	1929749..1930231	+	160	146277916	-	Rsph17025_1879	-	Holliday junction resolvase YqgF
1859	 64.30	-1	1930550..1931140	+	196	146277917	-	Rsph17025_1880	-	NnrU family protein
1860	 71.38	0	1931134..1931685	-	183	146277918	-	Rsph17025_1881	-	2'-5' RNA ligase
1861	 72.38	+1	1931682..1932854	-	390	146277919	-	Rsph17025_1882	-	histone deacetylase superfamily protein
1862	 65.36	0	1932868..1933326	-	152	146277920	-	Rsph17025_1883	-	glutathione peroxidase
1863	 69.28	0	1933668..1934165	+	165	146277921	-	Rsph17025_1884	-	NUDIX hydrolase
1864	 66.67	0	1934236..1934673	+	145	146277922	-	Rsph17025_1885	-	hypothetical protein
1865	 69.05	0	1934767..1935855	+	362	146277923	mtnA	Rsph17025_1886	-	methylthioribose-1-phosphate isomerase
1866	 62.94	-1	1935861..1936289	-	142	146277924	-	Rsph17025_1887	-	phosphate-starvation-inducible E
1867	 68.79	0	1936504..1936833	-	109	146277925	-	Rsph17025_1888	-	hypothetical protein
1868	 65.46	0	1936966..1937463	-	165	146277926	-	Rsph17025_1889	-	hypothetical protein
1869	 73.91	+1	1937654..1938619	+	321	146277927	-	Rsph17025_1890	-	hypothetical protein
1870	 70.65	0	1938606..1939007	+	133	146277928	-	Rsph17025_1891	-	hypothetical protein
1871	 71.02	0	1939007..1940086	+	359	146277929	-	Rsph17025_1892	-	hypothetical protein
1872	 69.14	0	1940183..1940344	-	53	146277930	-	Rsph17025_1893	-	hypothetical protein
1873	 72.25	+1	1940417..1940971	-	184	146277931	-	Rsph17025_1894	-	3-methyladenine DNA glycosylase
1874	 67.05	0	1941091..1941615	+	174	146277932	-	Rsph17025_1895	-	hypothetical protein
1875	 67.09	0	1941785..1943917	+	710	146277933	-	Rsph17025_1896	-	catalase
1876	 66.67	0	1943950..1944204	+	84	146277934	-	Rsph17025_1897	-	hypothetical protein
1877	 69.61	0	1944349..1945671	+	440	146277935	-	Rsph17025_1898	-	cytochrome P450-like protein
1878	 67.45	0	1945866..1946891	-	341	146277936	tdh	Rsph17025_1899	-	L-threonine 3-dehydrogenase
1879	 69.77	0	1946891..1948081	-	396	146277937	-	Rsph17025_1900	-	2-amino-3-ketobutyrate coenzyme A ligase
1880	 71.16	0	1948128..1949573	-	481	146277938	-	Rsph17025_1901	-	hypothetical protein
1881	 69.33	0	1949704..1950228	-	174	146277939	-	Rsph17025_1902	-	hypothetical protein
1882	 58.40	-2	1950397..1951110	-	237	146277940	-	Rsph17025_1903	-	two component transcriptional regulator
1883	 65.23	0	1951206..1951484	-	92	146277941	-	Rsph17025_1904	-	hypothetical protein
1884	 69.48	0	1951606..1952742	+	378	146277942	-	Rsph17025_1905	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1885	 69.99	0	1952749..1953501	-	250	146277943	-	Rsph17025_1906	-	putative hemolysin-like protein
1886	 67.41	0	1953609..1954013	+	134	146277944	-	Rsph17025_1907	-	methionine-R-sulfoxide reductase
1887	 69.57	0	1954151..1954633	-	160	146277945	-	Rsph17025_1908	-	SmpA/OmlA domain-containing protein
1888	 72.90	+1	1954854..1955447	+	197	146277946	-	Rsph17025_1909	-	hypothetical protein
1889	 67.15	0	1955622..1955828	+	68	146277947	rpmF	Rsph17025_1910	-	50S ribosomal protein L32
1890	 69.59	0	1955897..1956958	+	353	146277948	-	Rsph17025_1911	-	putative glycerol-3-phosphate acyltransferase PlsX
1891	 68.93	0	1956975..1957946	+	323	146277949	-	Rsph17025_1912	-	3-oxoacyl-(acyl-carrier-protein) synthase III
1892	 65.35	0	1958036..1958338	+	100	146277950	-	Rsph17025_1913	-	integration host factor, alpha subunit
1893	 73.14	+1	1958345..1959193	+	282	146277951	-	Rsph17025_1914	-	MerR family transcriptional regulator
1894	 69.92	0	1959413..1960489	+	358	146277952	-	Rsph17025_1915	-	2'-deoxycytidine 5'-triphosphate deaminase
1895	 71.46	0	1960679..1961179	+	166	146277953	-	Rsph17025_1916	-	flavin reductase domain-containing protein
1896	 68.08	0	1961246..1961599	+	117	146277954	-	Rsph17025_1917	-	regulatory protein, ArsR
1897	 71.45	0	1961610..1962299	+	229	146277955	-	Rsph17025_1918	-	hypothetical protein
1898	 66.28	0	1962478..1963521	+	347	146277956	-	Rsph17025_1919	-	ABC-type phosphate transport system periplasmic component-like protein
1899	 69.44	0	1963579..1965021	+	480	146277957	-	Rsph17025_1920	-	phosphate ABC transporter, inner membrane subunit PstC
1900	 69.26	0	1965018..1966367	+	449	146277958	-	Rsph17025_1921	-	phosphate ABC transporter, inner membrane subunit PstA
1901	 67.04	0	1966379..1967176	+	265	146277959	-	Rsph17025_1922	-	phosphate ABC transporter, ATPase subunit
1902	 66.94	0	1967190..1967918	+	242	146277960	-	Rsph17025_1923	-	phosphate uptake regulator, PhoU
1903	 68.98	0	1967918..1968610	+	230	146277961	-	Rsph17025_1924	-	two component transcriptional regulator
1904	 69.54	0	1968696..1969496	+	266	146277962	-	Rsph17025_1925	-	binding-protein-dependent transport systems inner membrane component
1905	 69.30	0	1969515..1970501	+	328	146277963	-	Rsph17025_1926	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
1906	 71.99	+1	1970498..1971286	+	262	146277964	-	Rsph17025_1927	-	ABC transporter related
1907	 69.00	0	1971306..1971776	-	156	146277965	-	Rsph17025_1928	-	hypothetical protein
1908	 70.96	0	1971773..1972378	-	201	146277966	-	Rsph17025_1929	-	hypothetical protein
1909	 72.19	+1	1972389..1973819	-	476	146277967	-	Rsph17025_1930	-	histidine kinase
1910	 71.33	0	1973809..1974966	-	385	146277968	-	Rsph17025_1931	-	hypothetical protein
1911	 67.09	0	1974977..1975687	-	236	146277969	-	Rsph17025_1932	-	two component LuxR family transcriptional regulator
1912	 68.53	0	1975844..1976650	-	268	146277970	-	Rsph17025_1933	-	secreted protein-like protein
1913	 72.03	+1	1976756..1977799	+	347	146277971	-	Rsph17025_1934	-	beta-lactamase domain-containing protein
1914	 68.52	0	1977815..1978408	-	197	146277972	-	Rsph17025_1935	-	hypothetical protein
1915	 66.78	0	1978419..1979279	-	286	146277973	-	Rsph17025_1936	-	ABC-2 type transporter
1916	 73.53	+1	1979276..1980004	-	242	146277974	-	Rsph17025_1937	-	ABC transporter related
1917	 62.96	-1	1980001..1980243	-	80	146277975	-	Rsph17025_1938	-	hypothetical protein
1918	 66.67	0	1980259..1980702	-	147	146277976	-	Rsph17025_1939	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.