IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1788	 68.08	0	1851961..1852314	+	117	146277846	-	Rsph17025_1808	-	IS66 Orf2 family protein
1789	 71.09	0	1852383..1853354	+	323	146277847	-	Rsph17025_1809	-	transposase IS66
1790	 65.57	0	1853476..1854207	-	243	146277848	-	Rsph17025_1810	-	IstB ATP binding domain-containing protein
1791	 68.04	0	1854220..1855752	-	510	146277849	-	Rsph17025_1811	-	integrase catalytic subunit
1792	 64.02	-1	1855924..1856640	+	238	146277850	-	Rsph17025_1812	-	hypothetical protein
1793	 64.17	-1	1856953..1857192	+	79	146277851	-	Rsph17025_1813	-	hypothetical protein
1794	 61.04	-2	1857250..1858209	+	319	146277852	-	Rsph17025_1814	-	integrase catalytic subunit
1795	 64.40	-1	1858469..1859041	+	190	146277853	-	Rsph17025_1815	-	transposase, IS4 family protein
1796	 65.16	0	1859334..1859732	-	132	146277854	-	Rsph17025_1816	-	single-strand binding protein
1797	 65.52	0	1859746..1860006	-	86	146277855	-	Rsph17025_1817	-	hypothetical protein
1798	 64.16	-1	1860290..1860928	-	212	146277856	-	Rsph17025_1818	-	hypothetical protein
1799	 63.69	-1	1860925..1861662	-	245	146277857	-	Rsph17025_1819	-	ERF family protein
1800	 64.40	-1	1861751..1862323	-	190	146277858	-	Rsph17025_1820	-	transposase, IS4 family protein
1801	 59.29	-2	1862375..1862740	-	121	146277859	-	Rsph17025_1821	-	hypothetical protein
1802	 63.84	-1	1863008..1865944	-	978	146277860	-	Rsph17025_1822	-	UvrD/REP helicase
1803	 59.55	-2	1866159..1866425	-	88	146277861	-	Rsph17025_1823	-	hypothetical protein
1804	 68.24	0	1867542..1867796	+	84	146277862	-	Rsph17025_1824	-	hypothetical protein
1805	 64.08	-1	1867801..1868109	+	102	146277863	-	Rsph17025_1825	-	plasmid stabilization system protein
1806	 60.33	-2	1868439..1868738	+	99	146277864	-	Rsph17025_1826	-	transposase IS3/IS911 family protein
1807	 66.50	0	1868735..1869322	+	195	146277865	-	Rsph17025_1827	-	hypothetical protein
1808	 62.71	-1	1869503..1870714	-	403	146277866	-	Rsph17025_1828	-	transposase IS116/IS110/IS902 family protein
1809	 63.52	-1	1870734..1871558	+	274	146277867	-	Rsph17025_1829	-	hypothetical protein
1810	 67.04	0	1873231..1874043	+	270	146277868	-	Rsph17025_1831	-	transposase
1811	 68.74	0	1874255..1875073	+	272	146277869	-	Rsph17025_1832	-	integrase catalytic subunit
1812	 67.86	0	1875070..1875573	+	167	146277870	-	Rsph17025_1833	-	IstB ATP binding domain-containing protein
1813	 65.03	0	1875649..1875954	+	101	146277871	-	Rsph17025_1834	-	hypothetical protein
1814	 69.86	0	1875951..1876577	+	208	146277872	-	Rsph17025_1835	-	hypothetical protein
1815	 63.77	-1	1876677..1876952	-	91	146277873	-	Rsph17025_1836	-	hypothetical protein
1816	 67.23	0	1877026..1877556	+	176	146277874	-	Rsph17025_1837	-	hypothetical protein
1817	 68.14	0	1877624..1878301	-	225	146277875	-	Rsph17025_1838	-	hypothetical protein
1818	 64.41	-1	1878556..1879176	-	206	146277876	-	Rsph17025_1839	-	transposase, IS4 family protein
1819	 74.86	+1	1880028..1880393	-	121	146277877	-	Rsph17025_1840	-	hypothetical protein
1820	 72.06	+1	1880412..1880912	-	166	146277878	-	Rsph17025_1841	-	hypothetical protein
1821	 71.34	0	1881073..1881714	-	213	146277879	-	Rsph17025_1842	-	hypothetical protein
1822	 65.08	0	1881891..1882457	-	188	146277880	-	Rsph17025_1843	-	hypothetical protein
1823	 70.26	0	1882711..1883433	+	240	146277881	-	Rsph17025_1844	-	CRP/FNR family transcriptional regulator
1824	 66.46	0	1883873..1886731	-	952	146277882	uvrA	Rsph17025_1845	-	excinuclease ABC subunit A
1825	 71.12	0	1886841..1888007	-	388	146277883	-	Rsph17025_1846	-	major facilitator transporter
1826	 66.67	0	1888099..1889493	-	464	146277884	-	Rsph17025_1847	-	dihydrolipoamide dehydrogenase
1827	 69.97	0	1889595..1890170	-	191	146277885	-	Rsph17025_1848	-	hypothetical protein
1828	 66.98	0	1890321..1891577	-	418	146277886	-	Rsph17025_1849	-	major facilitator transporter
1829	 70.51	0	1891657..1892697	-	346	146277887	-	Rsph17025_1850	-	queuosine biosynthesis protein
1830	 72.68	+1	1892789..1896082	-	1097	146277888	-	Rsph17025_1851	-	hypothetical protein
1831	 67.75	0	1896173..1896634	+	153	146277889	-	Rsph17025_1852	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1832	 67.41	0	1896929..1898269	+	446	146277890	-	Rsph17025_1853	-	peptidase M23B
1833	 67.82	0	1898259..1898777	+	172	146277891	-	Rsph17025_1854	-	hypothetical protein
1834	 63.32	-1	1898909..1899685	-	258	146277892	-	Rsph17025_1855	-	integral membrane protein-like protein
1835	 66.93	0	1899819..1900946	-	375	146277893	-	Rsph17025_1856	-	peptide chain release factor 2
1836	 66.98	0	1901038..1903587	-	849	146277894	-	Rsph17025_1857	-	1A family penicillin-binding protein
1837	 73.51	+1	1903678..1904904	-	408	146277895	-	Rsph17025_1858	-	N-acetylmuramoyl-L-alanine amidase
1838	 70.23	0	1904954..1906105	-	383	146277896	-	Rsph17025_1859	-	aminotransferase, class I and II
1839	 67.20	0	1906272..1907015	+	247	146277897	-	Rsph17025_1860	-	DSBA oxidoreductase
1840	 67.37	0	1907097..1908230	-	377	146277898	ispG	Rsph17025_1861	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1841	 68.58	0	1908360..1909559	-	399	146277899	-	Rsph17025_1862	-	hypothetical protein
1842	 64.38	-1	1909672..1910895	-	407	146277900	-	Rsph17025_1863	-	5-aminolevulinate synthase
1843	 72.98	+1	1911029..1911598	-	189	146277901	-	Rsph17025_1864	-	hypothetical protein
1844	 69.21	0	1911831..1913204	+	457	146277902	-	Rsph17025_1865	-	hypothetical protein
1845	 68.69	0	1913201..1913644	+	147	146277903	-	Rsph17025_1866	-	GCN5-related N-acetyltransferase
1846	 67.12	0	1914208..1915764	+	518	146277904	guaA	Rsph17025_1867	-	bifunctional GMP synthase/glutamine amidotransferase protein
1847	 66.99	0	1915830..1917662	-	610	146277905	-	Rsph17025_1868	-	ABC transporter related
1848	 73.01	+1	1917797..1918900	-	367	146277906	-	Rsph17025_1869	-	peptidoglycan-binding LysM
1849	 67.57	0	1919235..1919789	+	184	146277907	-	Rsph17025_1870	-	hypothetical protein
1850	 63.33	-1	1919870..1920469	-	199	146277908	-	Rsph17025_1871	-	superoxide dismutase
1851	 67.14	0	1920740..1922629	+	629	146277909	-	Rsph17025_1872	-	acyltransferase 3
1852	 70.97	0	1922712..1923269	-	185	146277910	-	Rsph17025_1873	-	sarcosine oxidase, gamma subunit
1853	 70.79	0	1923262..1926243	-	993	146277911	-	Rsph17025_1874	-	sarcosine oxidase alpha subunit family protein
1854	 64.20	-1	1926240..1926563	-	107	146277912	-	Rsph17025_1875	-	sarcosine oxidase, delta subunit, heterotetrameric
1855	 62.40	-1	1926603..1926977	-	124	146277913	-	Rsph17025_1876	-	hypothetical protein
1856	 66.75	0	1927057..1928304	-	415	146277914	-	Rsph17025_1877	-	sarcosine oxidase beta subunit family protein
1857	 74.38	+1	1928457..1929752	+	431	146277915	-	Rsph17025_1878	-	cytochrome c biogenesis factor-like protein
1858	 68.94	0	1929749..1930231	+	160	146277916	-	Rsph17025_1879	-	Holliday junction resolvase YqgF
1859	 64.30	-1	1930550..1931140	+	196	146277917	-	Rsph17025_1880	-	NnrU family protein
1860	 71.38	0	1931134..1931685	-	183	146277918	-	Rsph17025_1881	-	2'-5' RNA ligase
1861	 72.38	+1	1931682..1932854	-	390	146277919	-	Rsph17025_1882	-	histone deacetylase superfamily protein
1862	 65.36	0	1932868..1933326	-	152	146277920	-	Rsph17025_1883	-	glutathione peroxidase
1863	 69.28	0	1933668..1934165	+	165	146277921	-	Rsph17025_1884	-	NUDIX hydrolase
1864	 66.67	0	1934236..1934673	+	145	146277922	-	Rsph17025_1885	-	hypothetical protein
1865	 69.05	0	1934767..1935855	+	362	146277923	mtnA	Rsph17025_1886	-	methylthioribose-1-phosphate isomerase
1866	 62.94	-1	1935861..1936289	-	142	146277924	-	Rsph17025_1887	-	phosphate-starvation-inducible E
1867	 68.79	0	1936504..1936833	-	109	146277925	-	Rsph17025_1888	-	hypothetical protein
1868	 65.46	0	1936966..1937463	-	165	146277926	-	Rsph17025_1889	-	hypothetical protein
1869	 73.91	+1	1937654..1938619	+	321	146277927	-	Rsph17025_1890	-	hypothetical protein
1870	 70.65	0	1938606..1939007	+	133	146277928	-	Rsph17025_1891	-	hypothetical protein
1871	 71.02	0	1939007..1940086	+	359	146277929	-	Rsph17025_1892	-	hypothetical protein
1872	 69.14	0	1940183..1940344	-	53	146277930	-	Rsph17025_1893	-	hypothetical protein
1873	 72.25	+1	1940417..1940971	-	184	146277931	-	Rsph17025_1894	-	3-methyladenine DNA glycosylase
1874	 67.05	0	1941091..1941615	+	174	146277932	-	Rsph17025_1895	-	hypothetical protein
1875	 67.09	0	1941785..1943917	+	710	146277933	-	Rsph17025_1896	-	catalase
1876	 66.67	0	1943950..1944204	+	84	146277934	-	Rsph17025_1897	-	hypothetical protein
1877	 69.61	0	1944349..1945671	+	440	146277935	-	Rsph17025_1898	-	cytochrome P450-like protein
1878	 67.45	0	1945866..1946891	-	341	146277936	tdh	Rsph17025_1899	-	L-threonine 3-dehydrogenase
1879	 69.77	0	1946891..1948081	-	396	146277937	-	Rsph17025_1900	-	2-amino-3-ketobutyrate coenzyme A ligase
1880	 71.16	0	1948128..1949573	-	481	146277938	-	Rsph17025_1901	-	hypothetical protein
1881	 69.33	0	1949704..1950228	-	174	146277939	-	Rsph17025_1902	-	hypothetical protein
1882	 58.40	-2	1950397..1951110	-	237	146277940	-	Rsph17025_1903	-	two component transcriptional regulator
1883	 65.23	0	1951206..1951484	-	92	146277941	-	Rsph17025_1904	-	hypothetical protein
1884	 69.48	0	1951606..1952742	+	378	146277942	-	Rsph17025_1905	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1885	 69.99	0	1952749..1953501	-	250	146277943	-	Rsph17025_1906	-	putative hemolysin-like protein
1886	 67.41	0	1953609..1954013	+	134	146277944	-	Rsph17025_1907	-	methionine-R-sulfoxide reductase
1887	 69.57	0	1954151..1954633	-	160	146277945	-	Rsph17025_1908	-	SmpA/OmlA domain-containing protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.