IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.34   STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
135	 71.25	0	137455..138786	+	443	146276193	-	Rsph17025_0136	-	lambda family phage portal protein
136	 69.73	0	138783..140543	+	586	146276194	-	Rsph17025_0137	-	peptidase U35, phage prohead HK97
137	 66.21	0	140543..140761	+	72	146276195	-	Rsph17025_0138	-	hypothetical protein
138	 66.97	0	140763..141092	+	109	146276196	-	Rsph17025_0139	-	hypothetical protein
139	 59.66	-2	141340..142467	+	375	146276197	-	Rsph17025_0140	-	phage integrase family protein
140	 72.88	+1	142619..143680	-	353	146276198	-	Rsph17025_0141	-	FAD dependent oxidoreductase
141	 72.29	+1	143735..144463	+	242	146276199	-	Rsph17025_0142	-	hypothetical protein
142	 67.91	0	144460..145344	+	294	146276200	-	Rsph17025_0143	-	hypothetical protein
143	 73.53	+1	145523..149035	+	1170	146276201	-	Rsph17025_0144	-	chromosome segregation protein SMC
144	 61.98	-1	149533..149895	+	120	146276202	-	Rsph17025_0145	-	response regulator receiver protein
145	 66.38	0	150007..150357	+	116	146276203	-	Rsph17025_0146	-	hypothetical protein
146	 67.69	0	150358..151530	-	390	146276204	-	Rsph17025_0147	-	aminotransferase, class I and II
147	 66.48	0	151674..152207	+	177	146276205	-	Rsph17025_0148	-	peptide deformylase
148	 72.36	+1	152207..152698	+	163	146276206	-	Rsph17025_0149	-	peptide deformylase
149	 66.07	0	152695..153198	+	167	146276207	-	Rsph17025_0150	-	peptide deformylase
150	 71.84	+1	153202..154110	+	302	146276208	-	Rsph17025_0151	-	methionyl-tRNA formyltransferase
151	 68.78	0	154168..154404	+	78	146276209	-	Rsph17025_0152	-	hypothetical protein
152	 74.59	+1	154416..154907	-	163	146276210	-	Rsph17025_0153	-	hypothetical protein
153	 67.32	0	154940..155395	-	151	146276211	-	Rsph17025_0154	-	ribonuclease H
154	 73.29	+1	155447..155914	-	155	146276212	-	Rsph17025_0155	-	hypothetical protein
155	 66.06	0	155914..156408	-	164	146276213	-	Rsph17025_0156	-	iojap-like protein
156	 65.74	0	156447..156986	-	179	146276214	-	Rsph17025_0157	-	SOUL heme-binding protein
157	 67.44	0	157230..158648	+	472	146276215	-	Rsph17025_0158	-	isopropylmalate isomerase large subunit
158	 62.21	-1	158712..159317	+	201	146276216	leuD	Rsph17025_0159	-	isopropylmalate isomerase small subunit
159	 66.67	0	159566..160402	+	278	146276217	-	Rsph17025_0160	-	hypothetical protein
160	 66.58	0	161525..162634	+	369	146276218	-	Rsph17025_0162	-	3-isopropylmalate dehydrogenase
161	 67.09	0	162750..163703	+	317	146276219	-	Rsph17025_0163	-	hypothetical protein
162	 66.97	0	164987..165313	-	108	146276220	-	Rsph17025_0164	-	hypothetical protein
163	 64.90	0	165303..165698	-	131	146276221	-	Rsph17025_0165	-	hypothetical protein
164	 64.07	-1	165695..166156	-	153	146276222	-	Rsph17025_0166	-	hypothetical protein
165	 64.03	-1	166192..166911	-	239	146276223	-	Rsph17025_0167	-	hypothetical protein
166	 64.03	-1	167079..167684	-	201	146276224	-	Rsph17025_0168	-	transposase, IS4 family protein
167	 68.31	0	167721..167903	+	60	146276225	-	Rsph17025_0169	-	hypothetical protein
168	 68.08	0	167900..168253	+	117	146276226	-	Rsph17025_0170	-	IS66 Orf2 family protein
169	 68.38	0	168322..169893	+	523	146276227	-	Rsph17025_0171	-	transposase IS66
170	 62.22	-1	170025..170384	-	119	146276228	-	Rsph17025_0172	-	hypothetical protein
171	 63.08	-1	170470..170859	-	129	146276229	-	Rsph17025_0173	-	transposase, IS4 family protein
172	 61.94	-1	170880..171323	-	147	146276230	-	Rsph17025_0174	-	hypothetical protein
173	 62.17	-1	171577..172221	+	214	146276231	-	Rsph17025_0175	-	hypothetical protein
174	 67.13	0	172564..174069	+	501	146276232	-	Rsph17025_0176	-	signal recognition particle protein
175	 68.34	0	174146..174682	+	178	146276233	-	Rsph17025_0177	-	acetyltransferase
176	 72.32	+1	174679..175209	+	176	146276234	-	Rsph17025_0178	-	GCN5-related N-acetyltransferase
177	 71.84	+1	175206..175766	+	186	146276235	-	Rsph17025_0179	-	GCN5-related N-acetyltransferase
178	 61.95	-1	175805..176101	+	98	146276236	-	Rsph17025_0180	-	chorismate mutase
179	 67.24	0	176142..176492	+	116	146276237	rpsP	Rsph17025_0181	-	30S ribosomal protein S16
180	 69.80	0	176590..177099	+	169	146276238	-	Rsph17025_0182	-	16S rRNA processing protein RimM
181	 73.83	+1	177195..178046	+	283	146276239	-	Rsph17025_0183	-	hypothetical protein
182	 68.34	0	178104..178940	+	278	146276240	-	Rsph17025_0184	-	tRNA (guanine-N1)-methyltransferase
183	 63.73	-1	178989..179363	+	124	146276241	rplS	Rsph17025_0185	-	50S ribosomal protein L19
184	 63.51	-1	179376..179597	+	73	146276242	rpmE	Rsph17025_0186	-	50S ribosomal protein L31
185	 66.79	0	179856..180665	+	269	146276243	-	Rsph17025_0187	-	ATPase involved in chromosome partitioning-like protein
186	 66.38	0	180671..181024	-	117	146276244	-	Rsph17025_0188	-	regulatory protein, ArsR
187	 63.69	-1	181232..181567	+	111	146276245	-	Rsph17025_0189	-	hypothetical protein
188	 63.87	-1	181571..182356	+	261	146276246	-	Rsph17025_0190	-	F0F1 ATP synthase subunit A
189	 65.82	0	182408..182644	+	78	146276247	-	Rsph17025_0191	-	F0F1 ATP synthase subunit C
190	 66.67	0	182714..183256	+	180	146276248	-	Rsph17025_0192	-	F0F1 ATP synthase subunit B'
191	 69.19	0	183262..183816	+	184	146276249	-	Rsph17025_0193	-	F0F1 ATP synthase subunit B
192	 66.93	0	183948..184715	-	255	146276250	-	Rsph17025_0194	-	GntR domain-containing protein
193	 70.01	0	184819..185505	-	228	146276251	-	Rsph17025_0195	-	OmpA/MotB domain-containing protein
194	 72.44	+1	185620..186468	-	282	146276252	-	Rsph17025_0196	-	methylated-DNA--protein-cysteine methyltransferase
195	 67.44	0	186581..187225	+	214	146276253	-	Rsph17025_0197	-	endonuclease III
196	 67.88	0	187222..188214	+	330	146276254	-	Rsph17025_0198	-	ribokinase-like domain-containing protein
197	 69.01	0	188376..188759	+	127	146276255	-	Rsph17025_0199	-	histidine triad (HIT) protein
198	 67.56	0	188763..191576	-	937	146276256	-	Rsph17025_0200	-	DNA polymerase I
199	 65.00	0	191624..191803	-	59	146276257	-	Rsph17025_0201	-	hypothetical protein
200	 67.73	0	192094..192657	-	187	146276258	-	Rsph17025_0202	-	hypothetical protein
201	 71.19	0	192740..193756	+	338	146276259	-	Rsph17025_0203	-	ATPase
202	 73.20	+1	193753..194625	+	290	146276260	-	Rsph17025_0204	-	hypothetical protein
203	 72.85	+1	194625..197390	+	921	146276261	-	Rsph17025_0205	-	hypothetical protein
204	 71.41	0	197387..199453	+	688	146276262	-	Rsph17025_0206	-	hypothetical protein
205	 69.19	0	199474..200226	-	250	146276263	-	Rsph17025_0207	-	membrane protein-like protein
206	 69.67	0	200308..201741	+	477	146276264	-	Rsph17025_0208	-	FAD linked oxidase domain-containing protein
207	 74.00	+1	201806..202882	+	358	146276265	-	Rsph17025_0209	-	FAD linked oxidase domain-containing protein
208	 68.66	0	202895..204196	+	433	146276266	-	Rsph17025_0210	-	hypothetical protein
209	 70.12	0	204247..205056	+	269	146276267	-	Rsph17025_0211	-	peptidase S1 and S6, chymotrypsin/Hap
210	 67.30	0	205214..205690	+	158	146276268	-	Rsph17025_0212	-	heat shock protein Hsp20
211	 67.41	0	206007..207485	-	492	146276269	-	Rsph17025_0213	-	succinic semialdehyde dehydrogenase
212	 68.79	0	207615..208979	-	454	146276270	-	Rsph17025_0214	-	glutamate--cysteine ligase
213	 73.54	+1	209032..209598	-	188	146276271	-	Rsph17025_0215	-	hypothetical protein
214	 71.96	+1	209595..210368	-	257	146276272	-	Rsph17025_0216	-	hypothetical protein
215	 70.29	0	210380..211372	+	330	146276273	ubiA	Rsph17025_0217	-	prenyltransferase
216	 71.95	+1	211440..213368	+	642	146276274	-	Rsph17025_0218	-	OmpA/MotB domain-containing protein
217	 66.67	0	213420..213743	+	107	146276275	-	Rsph17025_0219	-	hypothetical protein
218	 73.14	+1	213758..214591	-	277	146276276	-	Rsph17025_0220	-	esterase/lipase-like protein
219	 70.30	0	214588..215220	-	210	146276277	-	Rsph17025_0221	-	hypothetical protein
220	 71.22	0	215374..216648	-	424	146276278	-	Rsph17025_0222	-	dihydroorotase, multifunctional complex type
221	 66.67	0	216645..217607	-	320	146276279	pyrB	Rsph17025_0223	-	aspartate carbamoyltransferase catalytic subunit
222	 74.10	+1	217743..218522	+	259	146276280	-	Rsph17025_0224	-	phage SPO1 DNA polymerase-related protein
223	 71.80	0	218627..219424	-	265	146276281	-	Rsph17025_0225	-	hypothetical protein
224	 67.00	0	219524..220117	+	197	146276282	-	Rsph17025_0226	-	hypothetical protein
225	 66.15	0	220166..220552	-	128	146276283	-	Rsph17025_0227	-	Na+/H+ antiporter subunit
226	 64.44	-1	220558..220827	-	89	146276284	-	Rsph17025_0228	-	multiple resistance and pH regulation protein F
227	 65.65	0	220824..221315	-	163	146276285	-	Rsph17025_0229	-	putative monovalent cation/H+ antiporter subunit E
228	 69.44	0	221312..222823	-	503	146276286	-	Rsph17025_0230	-	putative monovalent cation/H+ antiporter subunit D
229	 66.37	0	222820..223155	-	111	146276287	-	Rsph17025_0231	-	putative monovalent cation/H+ antiporter subunit C
230	 67.40	0	223155..226004	-	949	146276288	-	Rsph17025_0232	-	putative monovalent cation/H+ antiporter subunit A
231	 72.12	+1	226132..227397	-	421	146276289	-	Rsph17025_0233	-	ROK family protein
232	 68.98	0	227543..228580	+	345	146276290	-	Rsph17025_0234	-	periplasmic binding protein/LacI transcriptional regulator
233	 66.76	0	228676..229767	+	363	146276291	-	Rsph17025_0235	-	monosaccharide-transporting ATPase
234	 67.44	0	229767..230543	+	258	146276292	-	Rsph17025_0236	-	ABC transporter related
68.34	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.