IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1708	 68.99	0	1773046..1773390	-	114	146277766	-	Rsph17025_1727	-	hypothetical protein
1709	 67.84	0	1773615..1774805	-	396	146277767	-	Rsph17025_1728	-	phage Gp37Gp68 family protein
1710	 63.89	-1	1774798..1775085	-	95	146277768	-	Rsph17025_1729	-	hypothetical protein
1711	 64.83	-1	1775250..1775738	-	162	146277769	-	Rsph17025_1730	-	hypothetical protein
1712	 70.16	0	1775725..1775982	-	85	146277770	-	Rsph17025_1731	-	hypothetical protein
1713	 68.94	0	1775979..1776242	-	87	146277771	-	Rsph17025_1732	-	hypothetical protein
1714	 67.96	0	1776247..1776633	-	128	146277772	-	Rsph17025_1733	-	hypothetical protein
1715	 65.81	0	1777007..1777357	-	116	146277773	-	Rsph17025_1734	-	hypothetical protein
1716	 71.91	+1	1777399..1777722	-	107	146277774	-	Rsph17025_1735	-	hypothetical protein
1717	 66.04	0	1777955..1778434	-	159	146277775	-	Rsph17025_1736	-	hypothetical protein
1718	 56.33	-2	1778647..1779381	-	244	146277776	-	Rsph17025_1737	-	hypothetical protein
1719	 63.30	-1	1779490..1779786	+	98	146277777	-	Rsph17025_1738	-	hypothetical protein
1720	 57.50	-2	1779861..1780100	-	79	146277778	-	Rsph17025_1739	-	hypothetical protein
1721	 59.81	-2	1780097..1780417	-	106	146277779	-	Rsph17025_1740	-	XRE family transcriptional regulator
1722	 61.95	-1	1780692..1781030	+	112	146277780	-	Rsph17025_1741	-	hypothetical protein
1723	 62.55	-1	1781027..1781269	+	80	146277781	-	Rsph17025_1742	-	hypothetical protein
1724	 72.15	+1	1781582..1782055	+	157	146277782	-	Rsph17025_1743	-	hypothetical protein
1725	 70.75	0	1782052..1782345	+	97	146277783	-	Rsph17025_1744	-	chromosomal replication initiator DnaA domain-containing protein
1726	 69.61	0	1782335..1782979	+	214	146277784	-	Rsph17025_1745	-	hypothetical protein
1727	 71.55	0	1783199..1783792	+	197	146277785	-	Rsph17025_1746	-	hypothetical protein
1728	 69.28	0	1783810..1784460	+	216	146277786	-	Rsph17025_1747	-	hypothetical protein
1729	 70.74	0	1784517..1784933	+	138	146277787	-	Rsph17025_1748	-	HNH endonuclease
1730	 62.42	-1	1785027..1785521	+	164	146277788	-	Rsph17025_1749	-	hypothetical protein
1731	 62.93	-1	1785521..1787233	+	570	146277789	-	Rsph17025_1750	-	phage terminase
1732	 66.19	0	1787236..1788498	+	420	146277790	-	Rsph17025_1751	-	HK97 family phage portal protein
1733	 68.99	0	1788510..1789454	+	314	146277791	-	Rsph17025_1752	-	peptidase S49
1734	 67.05	0	1789457..1790764	+	435	146277792	-	Rsph17025_1753	-	phage major capsid protein, HK97
1735	 67.10	0	1790832..1791293	+	153	146277793	-	Rsph17025_1754	-	hypothetical protein
1736	 64.39	-1	1791508..1791990	+	160	146277794	-	Rsph17025_1755	-	hypothetical protein
1737	 70.31	0	1791990..1792346	+	118	146277795	-	Rsph17025_1756	-	phage head-tail adaptor, putative
1738	 67.89	0	1792343..1792750	+	135	146277796	-	Rsph17025_1757	-	hypothetical protein
1739	 66.89	0	1792892..1793335	+	147	146277797	-	Rsph17025_1758	-	HK97 family phage protein
1740	 68.23	0	1793401..1793847	+	148	146277798	-	Rsph17025_1759	-	hypothetical protein
1741	 63.57	-1	1794281..1794409	+	42	146277799	-	Rsph17025_1760	-	hypothetical protein
1742	 68.40	0	1795011..1797776	+	921	146277800	-	Rsph17025_1761	-	phage tape measure protein
1743	 69.39	0	1797776..1798435	+	219	146277801	-	Rsph17025_1762	-	hypothetical protein
1744	 67.52	0	1798432..1799019	+	195	146277802	-	Rsph17025_1763	-	hypothetical protein
1745	 67.79	0	1799284..1801599	+	771	146277803	-	Rsph17025_1764	-	hypothetical protein
1746	 71.04	0	1801942..1802742	+	266	146277804	-	Rsph17025_1765	-	hypothetical protein
1747	 72.42	+1	1802755..1803258	+	167	146277805	-	Rsph17025_1766	-	hypothetical protein
1748	 64.49	-1	1803412..1806120	+	902	146277806	-	Rsph17025_1767	-	hypothetical protein
1749	 62.81	-1	1806914..1807198	-	94	146277807	-	Rsph17025_1768	-	hypothetical protein
1750	 66.96	0	1807575..1807910	+	111	146277808	-	Rsph17025_1769	-	hypothetical protein
1751	 70.07	0	1807919..1808506	-	195	146277809	-	Rsph17025_1770	-	cytochrome c553-like protein
1752	 65.95	0	1808503..1809759	-	418	146277810	-	Rsph17025_1771	-	glucose/sorbosone dehydrogenase-like protein
1753	 74.40	+1	1810021..1810188	-	55	146277811	-	Rsph17025_1772	-	hypothetical protein
1754	 73.05	+1	1810185..1811312	-	375	146277812	-	Rsph17025_1773	-	protein of unknown function DUF395, YeeE/YedE
1755	 69.20	0	1811323..1812270	-	315	146277813	-	Rsph17025_1774	-	rhodanese domain-containing protein
1756	 68.68	0	1812611..1812958	+	115	146277814	-	Rsph17025_1775	-	endoribonuclease L-PSP
1757	 68.16	0	1813050..1814651	-	533	146277815	pgi	Rsph17025_1776	-	glucose-6-phosphate isomerase
1758	 70.83	0	1814663..1815334	-	223	146277816	-	Rsph17025_1777	-	6-phosphogluconolactonase
1759	 66.46	0	1815369..1816820	-	483	146277817	-	Rsph17025_1778	-	glucose-6-phosphate 1-dehydrogenase
1760	 69.64	0	1816899..1819520	-	873	146277818	-	Rsph17025_1779	-	malto-oligosyltrehalose synthase
1761	 70.68	0	1819517..1821334	-	605	146277819	-	Rsph17025_1780	-	4-alpha-glucanotransferase
1762	 69.08	0	1821331..1823109	-	592	146277820	-	Rsph17025_1781	-	malto-oligosyltrehalose trehalohydrolase
1763	 67.10	0	1823106..1825172	-	688	146277821	-	Rsph17025_1782	-	glycogen debranching enzyme GlgX
1764	 68.72	0	1825169..1827355	-	728	146277822	-	Rsph17025_1783	-	glycogen branching enzyme
1765	 68.33	0	1827352..1830660	-	1102	146277823	-	Rsph17025_1784	-	trehalose synthase
1766	 65.84	0	1830657..1832831	-	724	146277824	-	Rsph17025_1785	-	alpha amylase, catalytic region
1767	 71.01	0	1832950..1833225	-	91	146277825	-	Rsph17025_1786	-	hypothetical protein
1768	 65.04	0	1833300..1833668	+	122	146277826	-	Rsph17025_1787	-	response regulator receiver protein
1769	 66.42	0	1833757..1835391	+	544	146277827	-	Rsph17025_1788	-	methyl-accepting chemotaxis sensory transducer
1770	 65.95	0	1835485..1837299	+	604	146277828	-	Rsph17025_1789	-	hypothetical protein
1771	 56.07	-2	1837682..1839766	+	694	146277829	-	Rsph17025_1790	-	methyl-accepting chemotaxis sensory transducer
1772	 53.50	-2	1839825..1840424	+	199	146277830	-	Rsph17025_1791	-	chemoreceptor glutamine deamidase CheD
1773	 59.67	-2	1840421..1840720	+	99	146277831	-	Rsph17025_1792	-	hypothetical protein
1774	 60.43	-2	1840695..1841063	+	122	146277832	-	Rsph17025_1793	-	response regulator receiver protein
1775	 62.15	-1	1841071..1843131	+	686	146277833	-	Rsph17025_1794	-	CheA signal transduction histidine kinase
1776	 62.75	-1	1843133..1843591	+	152	146277834	-	Rsph17025_1795	-	putative CheW protein
1777	 61.81	-1	1843588..1844472	+	294	146277835	-	Rsph17025_1796	-	protein-glutamate O-methyltransferase
1778	 55.81	-2	1844483..1844869	+	128	146277836	-	Rsph17025_1797	-	response regulator receiver protein
1779	 57.47	-2	1844866..1845213	+	115	146277837	-	Rsph17025_1798	-	hypothetical protein
1780	 60.98	-2	1845387..1845632	-	81	146277838	-	Rsph17025_1799	-	hypothetical protein
1781	 62.46	-1	1845796..1847079	+	427	146277839	-	Rsph17025_1800	-	transposase IS116/IS110/IS902 family protein
1782	 63.60	-1	1847260..1848108	-	282	146277840	-	Rsph17025_1801	-	hypothetical protein
1783	 60.61	-2	1848778..1849041	-	87	146277841	-	Rsph17025_1803	-	transposase IS3/IS911 family protein
1784	 68.51	0	1849155..1849589	-	144	146277842	-	Rsph17025_1804	-	transposase IS3/IS911 family protein
1785	 64.40	-1	1849827..1850399	+	190	146277843	-	Rsph17025_1805	-	transposase, IS4 family protein
1786	 66.17	0	1851044..1851445	-	133	146277844	-	Rsph17025_1806	-	hypothetical protein
1787	 67.61	0	1851542..1851964	+	140	146277845	-	Rsph17025_1807	-	transposase IS3/IS911 family protein
1788	 68.08	0	1851961..1852314	+	117	146277846	-	Rsph17025_1808	-	IS66 Orf2 family protein
1789	 71.09	0	1852383..1853354	+	323	146277847	-	Rsph17025_1809	-	transposase IS66
1790	 65.57	0	1853476..1854207	-	243	146277848	-	Rsph17025_1810	-	IstB ATP binding domain-containing protein
1791	 68.04	0	1854220..1855752	-	510	146277849	-	Rsph17025_1811	-	integrase catalytic subunit
1792	 64.02	-1	1855924..1856640	+	238	146277850	-	Rsph17025_1812	-	hypothetical protein
1793	 64.17	-1	1856953..1857192	+	79	146277851	-	Rsph17025_1813	-	hypothetical protein
1794	 61.04	-2	1857250..1858209	+	319	146277852	-	Rsph17025_1814	-	integrase catalytic subunit
1795	 64.40	-1	1858469..1859041	+	190	146277853	-	Rsph17025_1815	-	transposase, IS4 family protein
1796	 65.16	0	1859334..1859732	-	132	146277854	-	Rsph17025_1816	-	single-strand binding protein
1797	 65.52	0	1859746..1860006	-	86	146277855	-	Rsph17025_1817	-	hypothetical protein
1798	 64.16	-1	1860290..1860928	-	212	146277856	-	Rsph17025_1818	-	hypothetical protein
1799	 63.69	-1	1860925..1861662	-	245	146277857	-	Rsph17025_1819	-	ERF family protein
1800	 64.40	-1	1861751..1862323	-	190	146277858	-	Rsph17025_1820	-	transposase, IS4 family protein
1801	 59.29	-2	1862375..1862740	-	121	146277859	-	Rsph17025_1821	-	hypothetical protein
1802	 63.84	-1	1863008..1865944	-	978	146277860	-	Rsph17025_1822	-	UvrD/REP helicase
1803	 59.55	-2	1866159..1866425	-	88	146277861	-	Rsph17025_1823	-	hypothetical protein
1804	 68.24	0	1867542..1867796	+	84	146277862	-	Rsph17025_1824	-	hypothetical protein
1805	 64.08	-1	1867801..1868109	+	102	146277863	-	Rsph17025_1825	-	plasmid stabilization system protein
1806	 60.33	-2	1868439..1868738	+	99	146277864	-	Rsph17025_1826	-	transposase IS3/IS911 family protein
1807	 66.50	0	1868735..1869322	+	195	146277865	-	Rsph17025_1827	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.