IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1624	 77.61	+2	1686694..1687488	+	264	146277682	-	Rsph17025_1643	-	hypothetical protein
1625	 71.03	0	1687485..1688813	+	442	146277683	-	Rsph17025_1644	-	FliI/YscN family ATPase
1626	 75.60	+2	1688815..1689228	+	137	146277684	-	Rsph17025_1645	-	hypothetical protein
1627	 75.93	+2	1689299..1691068	+	589	146277685	-	Rsph17025_1646	-	flagellar hook-length control protein
1628	 67.01	0	1691079..1691657	+	192	146277686	-	Rsph17025_1647	-	flagellar basal body-associated protein FliL
1629	 66.36	0	1691661..1692632	+	323	146277687	-	Rsph17025_1648	-	surface presentation of antigens (SPOA) protein
1630	 68.35	0	1692675..1692971	+	98	146277688	-	Rsph17025_1649	-	flagellar motor switch protein FliN
1631	 70.54	0	1693048..1693305	+	85	146277689	-	Rsph17025_1650	-	hypothetical protein
1632	 66.80	0	1693302..1694042	+	246	146277690	fliP	Rsph17025_1651	-	flagellar biosynthesis protein FliP
1633	 63.30	-1	1694042..1694308	+	88	146277691	-	Rsph17025_1652	-	flagellar biosynthetic protein FliQ
1634	 70.29	0	1694308..1695108	+	266	146277692	-	Rsph17025_1653	-	flagellar biosynthetic protein FliR
1635	 68.33	0	1695095..1696237	+	380	146277693	-	Rsph17025_1654	-	flagellar biosynthetic protein FlhB
1636	 71.93	+1	1696307..1697047	+	246	146277694	-	Rsph17025_1655	-	hypothetical protein
1637	 74.02	+1	1697054..1697719	+	221	146277695	-	Rsph17025_1656	-	hypothetical protein
1638	 71.79	0	1697725..1699050	-	441	146277696	-	Rsph17025_1657	-	RNA polymerase, sigma 54 subunit, RpoN
1639	 65.06	0	1699244..1700740	-	498	146277697	-	Rsph17025_1658	-	flagellin domain-containing protein
1640	 68.00	0	1700961..1702613	+	550	146277698	-	Rsph17025_1659	-	flagellar hook-associated 2 domain-containing protein
1641	 69.57	0	1702641..1703741	-	366	146277699	-	Rsph17025_1660	-	sigma-54 dependent trancsriptional regulator
1642	 72.16	+1	1703887..1704669	-	260	146277700	-	Rsph17025_1661	-	lytic transglycosylase, catalytic
1643	 70.89	0	1704687..1705916	-	409	146277701	-	Rsph17025_1662	-	flagellin-like protein
1644	 74.30	+1	1705924..1710021	-	1365	146277702	-	Rsph17025_1663	-	flagellar hook-associated protein FlgK
1645	 71.29	0	1710117..1710419	-	100	146277703	-	Rsph17025_1664	-	hypothetical protein
1646	 70.16	0	1710419..1711534	-	371	146277704	flgI	Rsph17025_1665	-	flagellar basal body P-ring protein
1647	 70.70	0	1711531..1712199	-	222	146277705	-	Rsph17025_1666	-	flagellar L-ring protein
1648	 66.41	0	1712207..1712995	-	262	146277706	-	Rsph17025_1667	-	flagellar basal-body rod protein FlgG
1649	 70.37	0	1713049..1713804	-	251	146277707	-	Rsph17025_1668	-	hypothetical protein
1650	 70.44	0	1713813..1715084	-	423	146277708	-	Rsph17025_1669	-	flagellar basal body FlaE domain-containing protein
1651	 69.62	0	1715110..1715787	-	225	146277709	-	Rsph17025_1670	-	flagellar hook capping protein
1652	 68.82	0	1715789..1716205	-	138	146277710	-	Rsph17025_1671	-	flagellar basal-body rod protein FlgC
1653	 66.67	0	1716205..1716597	-	130	146277711	-	Rsph17025_1672	-	flagellar basal-body rod protein FlgB
1654	 74.44	+1	1716686..1717495	+	269	146277712	-	Rsph17025_1673	-	hypothetical protein
1655	 68.84	0	1717519..1720191	-	890	146277713	-	Rsph17025_1674	-	multi-sensor hybrid histidine kinase
1656	 68.74	0	1720188..1720718	-	176	146277714	-	Rsph17025_1675	-	hypothetical protein
1657	 63.82	-1	1721001..1721633	+	210	146277715	-	Rsph17025_1676	-	two component LuxR family transcriptional regulator
1658	 69.27	0	1721685..1722338	+	217	146277716	-	Rsph17025_1677	-	hypothetical protein
1659	 63.87	-1	1722375..1722875	-	166	146277717	-	Rsph17025_1678	-	hypothetical protein
1660	 69.43	0	1723053..1723739	+	228	146277718	-	Rsph17025_1679	-	HAD family hydrolase
1661	 69.92	0	1723736..1724689	+	317	146277719	-	Rsph17025_1680	-	DeoR family transcriptional regulator
1662	 66.06	0	1724797..1726107	+	436	146277720	-	Rsph17025_1681	-	extracellular solute-binding protein
1663	 63.69	-1	1726202..1727074	+	290	146277721	-	Rsph17025_1682	-	binding-protein-dependent transport systems inner membrane component
1664	 63.18	-1	1727076..1727906	+	276	146277722	-	Rsph17025_1683	-	binding-protein-dependent transport systems inner membrane component
1665	 66.37	0	1727914..1728912	+	332	146277723	-	Rsph17025_1684	-	ABC transporter related
1666	 69.53	0	1729055..1730488	+	477	146277724	-	Rsph17025_1685	-	mannitol dehydrogenase domain-containing protein
1667	 66.12	0	1730728..1731825	+	365	146277725	-	Rsph17025_1686	-	TRAP dicarboxylate transporter- DctP subunit
1668	 69.20	0	1731994..1733964	-	656	146277726	-	Rsph17025_1687	-	TRAP dicarboxylate transporter, DctM subunit
1669	 61.50	-1	1733961..1734560	-	199	146277727	-	Rsph17025_1688	-	tripartite ATP-independent periplasmic transporter DctQ
1670	 68.48	0	1734944..1735330	+	128	146277728	-	Rsph17025_1689	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1671	 69.74	0	1735327..1735944	+	205	146277729	-	Rsph17025_1690	-	NADH-quinone oxidoreductase, B subunit
1672	 67.07	0	1735941..1737683	+	580	146277730	-	Rsph17025_1691	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1673	 71.94	+1	1737680..1738153	+	157	146277731	-	Rsph17025_1692	-	NADH dehydrogenase subunit E
1674	 72.34	+1	1738150..1739400	+	416	146277732	-	Rsph17025_1693	-	NADH dehydrogenase (quinone)
1675	 74.64	+1	1739397..1741979	+	860	146277733	-	Rsph17025_1694	-	NADH dehydrogenase subunit G
1676	 69.62	0	1742125..1743039	+	304	146277734	-	Rsph17025_1695	-	NADH dehydrogenase (quinone)
1677	 66.06	0	1743036..1743530	+	164	146277735	-	Rsph17025_1696	-	NADH dehydrogenase subunit I
1678	 75.15	+1	1743527..1744021	+	164	146277736	-	Rsph17025_1697	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
1679	 67.31	0	1744018..1744326	+	102	146277737	-	Rsph17025_1698	-	NADH-ubiquinone oxidoreductase, chain 4L
1680	 69.95	0	1744328..1746430	+	700	146277738	-	Rsph17025_1699	-	proton-translocating NADH-quinone oxidoreductase, chain L
1681	 68.17	0	1746409..1747869	+	486	146277739	-	Rsph17025_1700	-	proton-translocating NADH-quinone oxidoreductase, chain M
1682	 73.44	+1	1747869..1749212	+	447	146277740	-	Rsph17025_1701	-	NADH dehydrogenase (quinone)
1683	 69.35	0	1749292..1750743	+	483	146277741	-	Rsph17025_1702	-	phospholipase D/transphosphatidylase
1684	 68.36	0	1750740..1751093	+	117	146277742	-	Rsph17025_1703	-	hypothetical protein
1685	 69.02	0	1751097..1753733	-	878	146277743	-	Rsph17025_1704	-	cytochrome c, monohaem
1686	 71.90	+1	1753730..1754704	-	324	146277744	-	Rsph17025_1705	-	cytochrome c, monohaem
1687	 70.95	0	1754752..1755522	-	256	146277745	-	Rsph17025_1706	-	phosphoesterase, PA-phosphatase related
1688	 61.76	-1	1755703..1756191	-	162	146277746	-	Rsph17025_1707	-	autoinducer-binding domain-containing protein
1689	 63.79	-1	1756239..1756898	+	219	146277747	-	Rsph17025_1708	-	response regulator receiver protein
1690	 66.24	0	1757005..1757706	+	233	146277748	-	Rsph17025_1709	-	autoinducer-binding domain-containing protein
1691	 63.67	-1	1757881..1758513	+	210	146277749	-	Rsph17025_1710	-	autoinducer synthesis protein
1692	 70.00	0	1758627..1758896	+	89	146277750	-	Rsph17025_1711	-	hypothetical protein
1693	 66.67	0	1759235..1760857	+	540	146277751	mdoG	Rsph17025_1712	-	glucan biosynthesis protein G
1694	 68.40	0	1761061..1762848	+	595	146277752	-	Rsph17025_1713	-	glucosyltransferase MdoH
1695	 64.72	-1	1762841..1764070	+	409	146277753	-	Rsph17025_1714	-	hypothetical protein
1696	 62.94	-1	1764099..1764527	-	142	146277754	-	Rsph17025_1715	-	hypothetical protein
1697	 67.64	0	1764555..1766096	-	513	146277755	-	Rsph17025_1716	-	trimethylamine methyltransferase
1698	 73.43	+1	1766211..1766816	-	201	146277756	-	Rsph17025_1717	-	ABC-type uncharacterized transport system auxiliary component-like protein
1699	 68.12	0	1766819..1767784	-	321	146277757	-	Rsph17025_1718	-	hypothetical protein
1700	 68.09	0	1767788..1768561	-	257	146277758	-	Rsph17025_1719	-	ABC transporter related
1701	 69.12	0	1768561..1769661	-	366	146277759	-	Rsph17025_1720	-	hypothetical protein
1702	 68.97	0	1770207..1771205	-	332	146277760	-	Rsph17025_1721	-	phage integrase family protein
1703	 68.52	0	1771357..1771626	-	89	146277761	-	Rsph17025_1722	-	hypothetical protein
1704	 71.83	+1	1771623..1771874	-	83	146277762	-	Rsph17025_1723	-	hypothetical protein
1705	 66.67	0	1771871..1772515	-	214	146277763	-	Rsph17025_1724	-	hypothetical protein
1706	 60.83	-2	1772512..1772751	-	79	146277764	-	Rsph17025_1725	-	hypothetical protein
1707	 68.63	0	1772748..1773053	-	101	146277765	-	Rsph17025_1726	-	hypothetical protein
1708	 68.99	0	1773046..1773390	-	114	146277766	-	Rsph17025_1727	-	hypothetical protein
1709	 67.84	0	1773615..1774805	-	396	146277767	-	Rsph17025_1728	-	phage Gp37Gp68 family protein
1710	 63.89	-1	1774798..1775085	-	95	146277768	-	Rsph17025_1729	-	hypothetical protein
1711	 64.83	-1	1775250..1775738	-	162	146277769	-	Rsph17025_1730	-	hypothetical protein
1712	 70.16	0	1775725..1775982	-	85	146277770	-	Rsph17025_1731	-	hypothetical protein
1713	 68.94	0	1775979..1776242	-	87	146277771	-	Rsph17025_1732	-	hypothetical protein
1714	 67.96	0	1776247..1776633	-	128	146277772	-	Rsph17025_1733	-	hypothetical protein
1715	 65.81	0	1777007..1777357	-	116	146277773	-	Rsph17025_1734	-	hypothetical protein
1716	 71.91	+1	1777399..1777722	-	107	146277774	-	Rsph17025_1735	-	hypothetical protein
1717	 66.04	0	1777955..1778434	-	159	146277775	-	Rsph17025_1736	-	hypothetical protein
1718	 56.33	-2	1778647..1779381	-	244	146277776	-	Rsph17025_1737	-	hypothetical protein
1719	 63.30	-1	1779490..1779786	+	98	146277777	-	Rsph17025_1738	-	hypothetical protein
1720	 57.50	-2	1779861..1780100	-	79	146277778	-	Rsph17025_1739	-	hypothetical protein
1721	 59.81	-2	1780097..1780417	-	106	146277779	-	Rsph17025_1740	-	XRE family transcriptional regulator
1722	 61.95	-1	1780692..1781030	+	112	146277780	-	Rsph17025_1741	-	hypothetical protein
1723	 62.55	-1	1781027..1781269	+	80	146277781	-	Rsph17025_1742	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.